Tgro038036.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:101705628-101710894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.22 28 6.9 2.6 3 23 100 121 99 121 0.95 2 13 0.58 74 5.6 3.3 1 23 127 150 127 150 0.96 3 13 0.12 15 7.8 0.7 1 23 187 210 187 210 0.92 4 13 0.00067 0.085 14.9 3.2 1 23 217 239 217 239 0.97 5 13 9.6e-07 0.00012 23.8 2.7 1 23 245 267 245 267 0.98 6 13 7.9e-05 0.01 17.8 8.1 1 23 347 369 347 369 0.98 7 13 0.0085 1.1 11.4 0.5 1 21 476 496 476 500 0.92 8 13 4.5e-05 0.0057 18.6 0.7 3 23 507 527 506 527 0.97 9 13 1.2e-05 0.0015 20.4 2.8 1 23 533 556 533 556 0.96 10 13 0.0003 0.038 16.0 0.7 1 23 565 587 565 587 0.97 11 13 2.1e-06 0.00027 22.7 1.5 1 23 593 615 593 615 0.98 12 13 0.49 63 5.8 0.3 2 23 622 643 621 643 0.94 13 13 7.1e-06 0.00091 21.1 3.3 1 23 649 671 649 671 0.96
Sequence Information
- Coding Sequence
- ATGAGAAATCCATTAGTTGAAAATCATACGACTACGTCGCTGTTACAGAATCATGATACAATATCAGGAGCCACAAGCTCTAATATTGCAAACGAAGTTATAGATTTAGTAGAAGATTCGAATCAGATGGATGGGAATATGGTTAAACTAGATCCGGATGCGGGTTATGTTGAAAATTTGAGTAAAGCCGAAATATGTGGGGATAATAGTGTTTTGGACATTTCACAAGTAGACACTCATCCAGTGGAatgtaaaaaatcaaattataaaggaaaaatttattcaatagaGAATATGTGTGTTATCTGTAAAAAGACGTTTTCTTGCCAAAGAGAATTTGGTAAACATGCCCAAACAGATCATCCAAATGAGAAAGCGTTCAAGTGTCTACATTGTCCTGCGTTATTTTCCAAATTCAAATCAGTTACTGCACACTTCAACAGAAGACATGTCCACTTAGATAAAAGCAGATCAATATATTCGAATTCACAAAGATTTTTCACGACGGATAAAGAACTTGTTAAACACGCAAAACATGCCCATCCTCATGGAAAAGTATTTAAGTGTCTATATTGTCCGACGATATTTTCAAAACTGAAATCGGTTCCTGTTCATTATAAAAGAGGTCATTCCAATTTAAGAAAGtcttttttttgtgaatattgTAACATGTCATTTTATACTTACTTTCTATTGGATCGTCATACGCGATCTCACACAGAACATCGCCCATTTAGTTGCAAACAATGTGGCAAAACctacaaatataaaagaaacttgctagttcatataaaaacacattCGAATAATTATGAGTTTTCTAATACTAATTACGATGGTCATTATAAAGACGAGCTTTGCGATAATGACGAACAAAGTTTATACGAAAATTACGAACAAAATCTATTAACTGGAGATGAGTATTCTGGTACCAATGAACAAACTCTGTCATCAGAAAATGACGATGAGGAAATTATTACATCAGAAATTGTATCGGCAGATGGAAATTCCAATAATGCAACGAATCAGCAGTATCTGTTTAAATGTAATGAATGTCATAAAGCTTTCaaatataagaaaaactttaaatatcaTCAAAAAAATCACCGAACAAATAATGAGGCAACAGAGACCATAATTCTGGATGATACAATGGCGTATGACCAgaacataaatttttacaatagcACTTACTTTATAATAGATGAATTAAATACGGACACTGAACAATTCGAGAATTTTGGTGAAGAATCATTTAACACAGCAAACCATTCGGAAGAATATGGTTATGAAGATTTTGCTCCAGGAAATACGCAAACAACTGCAGATCTCTCCCAAAATGAATGCGGCATTTGTATGAAAGTATTTAAATGCCAGCAAGCCGTGGGCAAACACTTATCCCGTTGTCATCCAGAGATTGAGTTTTACAAATGTCCATATTGTGATGACAATTTCTATAGCTTAGATGCATTATCAATGCACATAACTGAGAAAAAGCATCATCAAAAACGAAATATATGTGAaatgtgtcttaagtcttttaaTCGCAGGGGCGATTTGAAACGCCACGCGAAAATTCATTCTGATGAGCGCCCTTATTCTTGTAATGTTTGTAGCAAAGCCTTTAAGCAGACTAACCATTTAAGACGTCATCAGGAAataagtcatgaaaatgtaaaGGAAACTGGGAAATTTGATTGCCaaatttgtcagaaaatttttttaacggaAGAATCACTAAAACGTCACGTAAGGTCACATGATAAAAAAACACAGTATCCTTGTTCAATGTGCAGTAAATCATTCAAAACCAGATATGAATGGCAGCGGCATCAGGCAACTCATAGttcaagaaaatatttaatatgcgAATTTTGTTTAAGGTCCTTTAATGATGTACAAACTTTTGATCTTCATCTTATGGAACATACGGGCGaacgaaaatatttatgtacaattTGTGACAAGTCATACAGAGAGAAGAGTCATTTAATTAGTCACCGAAAAACCCAcacaaaatgctaa
- Protein Sequence
- MRNPLVENHTTTSLLQNHDTISGATSSNIANEVIDLVEDSNQMDGNMVKLDPDAGYVENLSKAEICGDNSVLDISQVDTHPVECKKSNYKGKIYSIENMCVICKKTFSCQREFGKHAQTDHPNEKAFKCLHCPALFSKFKSVTAHFNRRHVHLDKSRSIYSNSQRFFTTDKELVKHAKHAHPHGKVFKCLYCPTIFSKLKSVPVHYKRGHSNLRKSFFCEYCNMSFYTYFLLDRHTRSHTEHRPFSCKQCGKTYKYKRNLLVHIKTHSNNYEFSNTNYDGHYKDELCDNDEQSLYENYEQNLLTGDEYSGTNEQTLSSENDDEEIITSEIVSADGNSNNATNQQYLFKCNECHKAFKYKKNFKYHQKNHRTNNEATETIILDDTMAYDQNINFYNSTYFIIDELNTDTEQFENFGEESFNTANHSEEYGYEDFAPGNTQTTADLSQNECGICMKVFKCQQAVGKHLSRCHPEIEFYKCPYCDDNFYSLDALSMHITEKKHHQKRNICEMCLKSFNRRGDLKRHAKIHSDERPYSCNVCSKAFKQTNHLRRHQEISHENVKETGKFDCQICQKIFLTEESLKRHVRSHDKKTQYPCSMCSKSFKTRYEWQRHQATHSSRKYLICEFCLRSFNDVQTFDLHLMEHTGERKYLCTICDKSYREKSHLISHRKTHTKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399747;
- 90% Identity
- -
- 80% Identity
- -