Tgro032530.2
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:5372878-5375792[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8e-05 0.0036 19.2 0.9 2 23 203 225 202 225 0.97 2 13 0.0008 0.1 14.6 2.9 1 23 231 253 231 253 0.94 3 13 0.00043 0.056 15.5 2.3 1 21 259 279 259 281 0.95 4 13 0.00017 0.022 16.7 2.0 1 23 287 309 287 309 0.98 5 13 0.1 13 8.0 3.8 1 23 315 337 315 337 0.98 6 13 0.00017 0.022 16.7 1.4 2 23 447 469 447 469 0.96 7 13 0.00043 0.056 15.4 1.0 1 23 475 497 475 497 0.99 8 13 5.5e-05 0.0071 18.3 0.8 1 23 503 525 503 525 0.98 9 13 2e-05 0.0026 19.6 1.6 3 23 533 553 531 553 0.96 10 13 0.025 3.1 9.9 4.4 1 23 559 581 559 581 0.98 11 13 0.00011 0.014 17.3 0.1 1 23 586 608 586 608 0.99 12 13 0.023 3 10.0 8.4 1 23 614 636 614 636 0.98 13 13 0.048 6.2 9.0 7.6 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- ATGGATTCCAAAATATGTTTAACGTGTCTTTGTAAGCCATGTAAAGCTCGCAGTGTAAATGATGTTATTttggaaaatcttaaaatactTGAAATACTTCATCAGGTGGTACCATTGTTCTTggaacaaaagaaattttcagTTCCTGACACAATTTGTCCTTTGTGTTTGAAGAAACTTATAATAGCcttcaaatttcaaaaacagtgtttggattctataaaaaatttacatacattgTGGGTGGAAAACTATTCAGATAAAGAGAAGCAACAAAAAGTGTCTCAAATGAAGTTGGAGACAGAGAATATTGAATTCGAAACTAATGAATTTAAGATTTATCAAGAAAACACAATGGAATCTCTTCCTGAATATAAGGCAGATTTGAAAAGGACTTTTGATGAAATTGCAATTGATCCTTTGATTGCAAATAAAGACGTGGAAATATTATGTGGGCATGATTATAATGAAAGCGGAAAACTCCTTAAAGAAAATGATAATGATGTATTAAATGATAAATTACAAAGTAACGAAAATAGttacaACAACTTGCAAcgcgaaaatgttgccaaaGGAGCAGTTGATGAGCCATCAGTTGTTACAAATCAATGTAAGATTTGTAAGAAAATCTTTAAGCAACCTCAAGGCCTAGCCTCGCACATGTCTAAAACGCATTTCAAGAAGCATTTATACCAATGTAAAAAGTGTGGCAAAGGTTTCAGTGTGGAAGAACTCTTCATAAGACACTGTAATCGCCATTTAGGTGTCAAACCTTTTTCTTGCGCCCAGTGTGATAAAGCCTTTGATACTAATAGTAGACTAAATCAGCATATGCTTTGCCATTCTAAAGAGCTTTCTTATGTATGTACTGTTTGTGGGAAAAAGTTTTACCGTATTGATGTTTACAAACAGCACAAGCGACGCCACGACGACGAGGAACTATTCCAATGTTTAAAATGTGCTAAAACTTTTCAAACTTTCTCTGAGCATATGAAACATATTGAGACACATAAAACTGATAAGTCCTTCGAGAGTAAAGTTTGTGATGAAAAGCTAGAAGAAGAGAAGAAACCTTTTCAATGTACAAGACGTATACACAAGGAAAAAAAGTGTGAACTTAATGAACAAATTACAATGGACTCCGAAAGTGATGAAACATTAGAATTTCCATTGGAACAAACAATCACAGAATTTAAGCCTGCAAATAAGGAAGATAATGCAATTTCAGTTTCTTGTAATAAAATTGAggataatgaaaaatttaatataaaactagaGGAAAATGAGAGCAGAAATGACATTGAATGTATTATTACACCGGCCACGAATGAATCAGCTCAATGTGATCTGTGCAACCAAGTATTTAAGAATCCTCATGGTTTAGCACGACACAGGTCTAGTACTCACTTTAAGAAACATTTATACCAATGCGATCAATGTGATAGAGGTTTTAGTGTTGAAGAATTCTATATAAAACACCGGAATCGACATTTAGGCATAAAAACTTTCAAATGTAAACAGTGTGATAAAGCTTTTGAAACAAATAGTATTCTCAACCAACATTTGATTTCTCATTCTACATTAACCCCACATTTATGCACCATTTGTGGCAATAGTTTTCGTCGTCTTGATGGCTTAAGACAGCATATGTTACGCCACGGAGAAGAAAGGCCGTTTAAATGTTCGGTATGTTCTAAAAGCTTTAAATGTCTCTCTGACAAATTAAAACACATGAGCATACATGATGAAAAACGTTATGAGTGTAACATTTGCGGTTCACGTTTAGCCACTCCTGAGTCCCTTTCGCAGCATCAAATGACACATACAGGCGAAAAGCCTTTTAAATGCAGTCATTGTGAAAAATGcTTCATTTCTTTGTCCAATATGAAATGTCACGAGAGAATACATACTGGCGAAAAACCTTATAAATGTCAATACTGTTGCAAGTCATTTAGGCAAAGCAACGATCGTAAAAAGCACACAAACCGCATGCATAAGAATGAAATGATTAACTCAAAATCTGATCAAAATCGTAACGACCTGAAagcaaatttataa
- Protein Sequence
- MDSKICLTCLCKPCKARSVNDVILENLKILEILHQVVPLFLEQKKFSVPDTICPLCLKKLIIAFKFQKQCLDSIKNLHTLWVENYSDKEKQQKVSQMKLETENIEFETNEFKIYQENTMESLPEYKADLKRTFDEIAIDPLIANKDVEILCGHDYNESGKLLKENDNDVLNDKLQSNENSYNNLQRENVAKGAVDEPSVVTNQCKICKKIFKQPQGLASHMSKTHFKKHLYQCKKCGKGFSVEELFIRHCNRHLGVKPFSCAQCDKAFDTNSRLNQHMLCHSKELSYVCTVCGKKFYRIDVYKQHKRRHDDEELFQCLKCAKTFQTFSEHMKHIETHKTDKSFESKVCDEKLEEEKKPFQCTRRIHKEKKCELNEQITMDSESDETLEFPLEQTITEFKPANKEDNAISVSCNKIEDNEKFNIKLEENESRNDIECIITPATNESAQCDLCNQVFKNPHGLARHRSSTHFKKHLYQCDQCDRGFSVEEFYIKHRNRHLGIKTFKCKQCDKAFETNSILNQHLISHSTLTPHLCTICGNSFRRLDGLRQHMLRHGEERPFKCSVCSKSFKCLSDKLKHMSIHDEKRYECNICGSRLATPESLSQHQMTHTGEKPFKCSHCEKCFISLSNMKCHERIHTGEKPYKCQYCCKSFRQSNDRKKHTNRMHKNEMINSKSDQNRNDLKANL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01399708;
- 90% Identity
- -
- 80% Identity
- -