Tgro041050.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465278.1:27280334-27297339[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.25 32 6.8 0.2 2 23 258 280 257 280 0.95 2 14 0.22 28 6.9 0.4 6 23 289 306 289 306 0.98 3 14 4.6e-06 0.00059 21.7 1.6 1 23 312 335 312 335 0.97 4 14 8.9e-05 0.011 17.6 0.5 2 23 341 362 340 362 0.96 5 14 9.9e-07 0.00013 23.8 0.4 2 23 368 390 367 390 0.96 6 14 0.029 3.7 9.7 0.3 3 23 396 415 394 415 0.95 7 14 0.00048 0.062 15.3 1.5 2 23 424 446 423 446 0.95 8 14 2e-05 0.0025 19.7 0.2 1 23 455 478 455 478 0.97 9 14 0.021 2.6 10.2 0.2 3 23 486 506 485 506 0.92 10 14 0.00056 0.072 15.1 1.5 1 22 512 533 512 533 0.96 11 14 7 9e+02 2.2 0.1 2 23 750 772 749 772 0.91 12 14 0.02 2.6 10.2 0.0 6 23 781 798 781 798 0.99 13 14 0.016 2 10.5 7.6 2 23 805 827 804 827 0.95 14 14 0.00014 0.018 17.0 0.9 3 23 834 854 832 854 0.97
Sequence Information
- Coding Sequence
- ATGAATTGCCTTTTGTGCTTAGAAGTAACTGAAAGTTATAAAGATTTAATAGTTTTTAACTCCAGCTTATGGCAGGAACTAAACATGCAGTATATTATTGAAAAGCATCTTTGGAAATTGgAAGTTTTAAATAGTCAATCCTATATATGTCAAGCGTGTTGGCAAGAAATATACAACTTCCATAAGTTTTATTCAAAACTTGAAAAAGCCCGTTCAGATTTAAATGGTTTATTGAAAACTGAAGAAGTTACCAAAGAAGCTGTTGAAACAGTATCTGAAGAACCTGAActtgaaatgttattttttaaagaagaatGTTCTATAGATATATTTGAAAAGGAAGATGAGGAGGAAGCAAATTATCCTAAAACTAATATCAAGCGTAAAAGCTCTAGAAAGAAAAATACAaatgataacaataatattgcaagaAAAAGTTCGAGGAAAAGAACCAACAAAGAACAAAGTAATACTGAAATAAGTGAACTAAAATCACTTGAAAATCCAGATGAAGTTGTCATAAAGCTAGAAGTTGAAAGAATAGAAAAAAACGCTAAAGAAAACAGAATAAAATTCgatgaaaatataataattagaACAGAATTAGAATTTAAAACAACAGAAAATGGCGCTAAACAAATCAAAATGGAAGAAGACGATCAGAGTGATAGTTCCACAAATGACGATGATACTTCCTCTAATGAGGCTGATTCAggtcaattaactaaattatcAGATGAAGACAAATTCGTagcagaaaattttcaaatcacCTGTGACATTTGTAAAATCCCACTGGATACATTTTCCGCAATGCTCAAACATTATAAAAACGATCACAATCAGCGGGGACATGTTTCTTGTTGTAATTTTAACTTTTACCGGCGTTTTGAATTAATAGATCATATCAAGTATCACCAAAATCCTgaatattttaaatgcaaacacTGTGACAAAGTATTCCCTAAACGCGCAGGGCTAAAGAGTCATATAGAGAAAGTTCATGAGGCAGAGGTTGTTGAATGTGACATTTGTGGCAAAAGTTTAACAAATGAAAAAGGTCTAAAAAAACACAAGAAACTGCACAAAACTGAAGATATATCTTGTGAAAAATGTGGTAAATCTTATTCATCTAAATACTCCCTAGACAATCACATGCGAGTTGTCCACATTACAAATATAATTTGCCATTTATGTGGCAAATCTGTTATATTACCCGACTTAAAACGTCATATGGCACGGCATGAAGGAAAAACTCCACCAAAGGTAAGCTGTAAAATTTGTGATCGACAGCTTTCAGATAAGGGTTGTTTAAATCGACACTTGCGTGCGCAACATCCACCAAAAGGAACtaaaactgaatttaaatgtgCTGAGTGTCCAAAAGTGTTTTCAGCTGGTTATAGTCTTAAGAGGCACATAAGACAAGTGCACGAAAATGCGTATGAAAGAAAGTGTATATTGTGTGGTAAAACAGTCAAAGGATCCGTTGCCCTAAGGgAGCATATGTCAAGGCATAAGGGTGAACCCTTATACGTTTGCGGATTTTGTcctagaaaattttattcaagtgGAAACTTGCACACACATCGTAAAACATGTTCTGGAAatcgaaaagaaaaaaatgaAGATGACGAGATAGCAAGTTCTCTTAAAACTAAAAGCAATCGTAAATGCTCTAGAAAGAAAAGTTCACAAGACAaaaatgttgtaaaaaataGTTCGAGGAAAAAATCCTCGAAcgataaaataaacaaactaaaATCCAATGAAAATCCAGATGAAATTGGTACAAAATCTGAAGTAGAAAGAATAGAAAATGACAAGTCCGATGAAGATGGAGCTGAAATTGATTCAGAAttaaaaacaatagaaaatgaTGCTGAAGTCAACAAAATGGAAGATGAGATAAActctttttgctttaaaatcaGTAATAAGCTTAAATCCTCTAGAAAGGAAAGTACAAATGGTAACAAAATTATTGCAAGAAAAAGTTCGAGGCAAAGATCCAACAACGACAAAAGTGATACAGAAATCGAAGAATttcaatttgttgaaaattCAGATGAAATTGACAAAGAGTTAGATGAAAATGTAgatgaaattaaaagaaaattagaaTTAGAACCAACAGAAAATGACGCTAAACAAAAGAAAGTGAAAGAAAACGATCAAAATCATAGTTCCACAAAATTAGATGAATTATCTAATGTGGACAAATTCGTAGCCGACAATTTTCAACTGAATTGTGACATTTGTAAAATCCCAATGGATACATTTTCTGCAATAGTCAAACATTACAGAGAGATACACAATCAGCGTGGGTATGTTAAGTGCTGCGGTACTAAGTTTATAACTCGTGTTGAATTAATCGATCATATTAATATCCACGAAAACCccgaatatttaaaatgcaaaTACTGCACCAAAACGTTTGCTAAACGTACATGCCTGAAACTGCATACAAAACATGTCCATGAGGAAAAGATGGTGAATTGTGAAATTTGTGGCAAAAGTTTAGTAACTGAATTATGTTTAAAAAGGCACATGCTTACACATAATACTGGAGGGAGAAGGATATCTTGCAAACAATGTGGTAAATCGTAA
- Protein Sequence
- MNCLLCLEVTESYKDLIVFNSSLWQELNMQYIIEKHLWKLEVLNSQSYICQACWQEIYNFHKFYSKLEKARSDLNGLLKTEEVTKEAVETVSEEPELEMLFFKEECSIDIFEKEDEEEANYPKTNIKRKSSRKKNTNDNNNIARKSSRKRTNKEQSNTEISELKSLENPDEVVIKLEVERIEKNAKENRIKFDENIIIRTELEFKTTENGAKQIKMEEDDQSDSSTNDDDTSSNEADSGQLTKLSDEDKFVAENFQITCDICKIPLDTFSAMLKHYKNDHNQRGHVSCCNFNFYRRFELIDHIKYHQNPEYFKCKHCDKVFPKRAGLKSHIEKVHEAEVVECDICGKSLTNEKGLKKHKKLHKTEDISCEKCGKSYSSKYSLDNHMRVVHITNIICHLCGKSVILPDLKRHMARHEGKTPPKVSCKICDRQLSDKGCLNRHLRAQHPPKGTKTEFKCAECPKVFSAGYSLKRHIRQVHENAYERKCILCGKTVKGSVALREHMSRHKGEPLYVCGFCPRKFYSSGNLHTHRKTCSGNRKEKNEDDEIASSLKTKSNRKCSRKKSSQDKNVVKNSSRKKSSNDKINKLKSNENPDEIGTKSEVERIENDKSDEDGAEIDSELKTIENDAEVNKMEDEINSFCFKISNKLKSSRKESTNGNKIIARKSSRQRSNNDKSDTEIEEFQFVENSDEIDKELDENVDEIKRKLELEPTENDAKQKKVKENDQNHSSTKLDELSNVDKFVADNFQLNCDICKIPMDTFSAIVKHYREIHNQRGYVKCCGTKFITRVELIDHINIHENPEYLKCKYCTKTFAKRTCLKLHTKHVHEEKMVNCEICGKSLVTELCLKRHMLTHNTGGRRISCKQCGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -