Tgro039478.1
Basic Information
- Insect
- Tachina grossa
- Gene Symbol
- -
- Assembly
- GCA_949987645.1
- Location
- OX465277.1:148566614-148567985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0013 0.17 13.9 6.7 1 23 26 49 26 49 0.97 2 12 9.1 1.2e+03 1.8 1.1 1 19 56 74 56 77 0.84 3 12 0.0015 0.2 13.7 0.9 1 23 86 109 86 109 0.97 4 12 9.4 1.2e+03 1.8 1.7 2 23 157 177 156 177 0.79 5 12 2.4e-05 0.0031 19.4 0.7 1 23 183 205 183 205 0.98 6 12 3.9e-06 0.0005 21.9 3.8 1 23 211 234 211 234 0.97 7 12 0.0012 0.15 14.1 2.8 1 21 240 260 240 262 0.95 8 12 1.5e-05 0.0019 20.0 0.5 3 23 299 319 298 319 0.99 9 12 9.1e-06 0.0012 20.7 2.7 1 23 325 347 325 347 0.99 10 12 5.9e-08 7.5e-06 27.6 1.0 1 23 353 375 353 375 0.99 11 12 2.7e-06 0.00034 22.4 1.2 1 23 381 403 381 403 0.98 12 12 4.3e-05 0.0055 18.6 0.3 1 19 409 427 409 427 0.98
Sequence Information
- Coding Sequence
- ATGGGGTTTGAGTTACATTTAGAGCTGGATTCGGAAACGGAAACTGAAAGCATCGAAAATGAAGAgatattgccatataaatgtTGCATGTGCAGTAAATCATTTAAGcgaaaatttcaaataactcAACATCAAACATCAATGCACAATTATGAATTGTTGGAATTCAAATGTGAACGTTGCTTTTTTAGAACTGTATCACAGAAAGTTTTATATTATCATACAGTAAGCCAGTGTTTTAATGTTGAGAAAATGTACCAATGCGATCAGTgtaatttcaaatttatgtggCAAGAGAACCTCGAGAAGCATATTTCGATATTCCATACTTCGGACGTTTTCGTCAAAACACTGCATACTTCTGACACAACAAGCAATACTAATGCTCAATGCTTTGAAACAGAAGAAGCTTCCCAGCAACAAAACGATACAGATGCAAGGGATTGCATTCAATCTAAAGACGTATGTAAATGTCTCATTTGTGGAAATTATATTgccaaaaataattattcagaACATATTAGAAGACACAAATGTGACAAATCTTACAAATGCGATTTATGCGAAATGGCCTTTATAACAAATACCGCATTAAGGAAACATCAGTTCATGCATACGGGAGGACGTCCTTTCACATGTACCTTTTGCTGGAAATCGTTCAAGAGGCGGAGCACTCTACGTCTACATCAACAACGGTTGCACACCGAAAAACTACCATACAGATGCACaatttgttcaaaatcattTCTACAATCGGTACATCTGACTGCTCATAAGCGATGTCATTCGTGTGAAAAGCCAAAAAGACAAAACATATTAATGTCGACACCAGATAAGAAGCCGGACTCAACTGATTCTACCCAACATGTACAAGGAGGGAAAAGGACAAACTTATGTCCAATTTGTGGTGTCCATTTGTCATACAAATCAAGTCTTACAATACATATTAGAACCCATACGGGCGAAAGGCCATTCAAGTGCGATCTTTGTGATAAAAGCTTTATAAAAATAGTGCATTTAAATCTGCATCGACGCACACACTTTACTGAACGTCCTTTTAAGTGTACAATTTGCGAGAAATCTTTTGTTCACAGTGGCGGATTAAAAGCACACATGCGCATTCATACTGGCGAGCGTCCATATCAGTGTAGTGTTTGCCAGAAAACATTTAGGAATGCAGGCACTCTGAGGGAGCATTCACGCAATCATACTGGCAAGAAACCCTTTATATGTGAGATTTGCAATAAAGCCTTTATATATTCCTCGTATCTCAAAAGGCATTGTGTCCAAAGTGGCCATTATACAGAAAATAATTGA
- Protein Sequence
- MGFELHLELDSETETESIENEEILPYKCCMCSKSFKRKFQITQHQTSMHNYELLEFKCERCFFRTVSQKVLYYHTVSQCFNVEKMYQCDQCNFKFMWQENLEKHISIFHTSDVFVKTLHTSDTTSNTNAQCFETEEASQQQNDTDARDCIQSKDVCKCLICGNYIAKNNYSEHIRRHKCDKSYKCDLCEMAFITNTALRKHQFMHTGGRPFTCTFCWKSFKRRSTLRLHQQRLHTEKLPYRCTICSKSFLQSVHLTAHKRCHSCEKPKRQNILMSTPDKKPDSTDSTQHVQGGKRTNLCPICGVHLSYKSSLTIHIRTHTGERPFKCDLCDKSFIKIVHLNLHRRTHFTERPFKCTICEKSFVHSGGLKAHMRIHTGERPYQCSVCQKTFRNAGTLREHSRNHTGKKPFICEICNKAFIYSSYLKRHCVQSGHYTENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -