Tgro032531.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina grossa
Gene Symbol
-
Assembly
GCA_949987645.1
Location
OX465277.1:5376949-5381180[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.1 1.5e+02 4.7 1.6 5 23 190 208 188 208 0.95
2 15 0.006 0.77 11.9 2.7 1 23 214 236 214 236 0.99
3 15 9.3e-05 0.012 17.5 3.6 1 23 292 314 292 314 0.98
4 15 2.5e-05 0.0032 19.3 0.3 1 23 422 444 422 444 0.96
5 15 0.019 2.4 10.3 0.9 1 23 450 472 450 472 0.94
6 15 5.1e-06 0.00065 21.5 0.5 1 23 489 511 489 511 0.98
7 15 0.026 3.4 9.8 0.5 1 23 520 543 520 543 0.95
8 15 0.0029 0.37 12.9 4.8 1 23 549 571 549 571 0.98
9 15 5.6e-05 0.0072 18.2 0.3 2 23 578 599 577 599 0.97
10 15 6e-08 7.7e-06 27.6 0.5 1 23 605 627 605 627 0.96
11 15 0.0093 1.2 11.3 2.2 1 23 633 655 633 655 0.98
12 15 5.1e-05 0.0065 18.4 1.6 1 23 661 683 661 683 0.96
13 15 1.6e-05 0.0021 19.9 3.2 1 23 689 711 689 711 0.99
14 15 2.7e-06 0.00035 22.4 0.7 1 23 717 739 717 739 0.99
15 15 6.5e-05 0.0083 18.0 0.4 1 23 745 767 745 767 0.97

Sequence Information

Coding Sequence
ATGTCTAATGACTTTAACTCTAAATGCCGCACTTGCCTAAGTGAATCAAATGTTTACCACCAACTGTTTGATTATGTGgaagaaaactataaaatattgGAGATGTTGGATGGTATAGTGCCGCAAATTGATATCAAGACTTCATCTCAATTTTCCACTTTAGTGTGTAAAATTTGTGTGGATAAATTGTTAACTGGTTATAAGTTTCAACAATTATGCATAGAAACTAATAATCGGCTGCATGATTTGTTGGGGATTGCCGTCTTTGAGGCGGAGTCGAAATTGGAAAGGATACTGGATCCCTTAACCGGAGAGACAAACCTTAAGATGAAACAGGAAATTGAGGAAGATCCGTGTTTTGAATGCGAAGTTCCTCCCGATGAGTTAATGGAAGGAATGGGGTCGGACAACAATAGCTCCGTTCCGGATGCGGGTACTGATACAGACTCAAGCAATGAAAAACTATCAGTTTTAATGAAAAAGTCAGTCAAAAAATCTCCCGTTAagattgaaaattttgaaaaATTCCATAAACTAAATCGGCGTAAAGGTCACTTTCCTGATACTGAATGTCGTACACATTTTAGCAGCTTAAATCGGTTAAAACAACATACATCTATACATGATAAAAAGCGGTGTTACAAATGCCAAATTTGTAATACTAAAATAATGtttaagaaaacttttaaagCTCATATGTTAACCCATACAAATGGAGAGAGTGATTCCAAAAATATAGCACTACTGAATGATGGTGTGTTAAATACCGACTCCAGGAAGAATTTTGAAACACAGGAGCTGTTAGATGAGGACCAAGTGAGTGATAAGGATGGAGAAGAAAATGTGTGCAAAGACTCAAAAGAAATGCTTACTTTTCAATGTCCGGACTGTTCgaaatgttttcaaaaaaagGCTTCATTCTCTGCTCACTATAAAgtccacaaaaaaaaagaattacttaaaaataaaagccaagCTTTTGAACCAgacttaaaaattattgaggAGTTTAATACGTCGAGCAAATTTCAGGATGAAAAAGCAATagacaaaatttcaaaaatcattgTCAAAGAAGAAATGGAAAACCCATCCCAATTATATGAAGGAGGCATAGATTGGCTTAATAACGATTATGACGATTCTGATGATAACTCAGGAAATGAATTGTTTGTCAAGTCCGAAGCTAAAAATGTTGATTTCGTTGATACCGGCATAGGTGAGGTGGAAAAacccaacagcagcaacaaaagAAATGGTAATTTTCCTTGCGAAGTGTGCGGCAAAATATTCGATCGTCCTTATCGCTTAAAGCGACACAGTTCCGTGCATTCTCTTGCAAGACCACACGAATGCGAAATTTGTAAATATCGTTTTGCCACTGCCAATATATTAAAAGCTCATTTGTTTCAACATACAAATGAAACAGGAGGGAATTTGCATTCTCAATCTCGCCCCGAAGGTTTTAAGTGTCCCGATTGCCCTAGACGTTTTGAAAAACAAGCCTCACTATCGGCTCATCGTCAAAGTCACACACGCAATACTTCAGAATCCAATTATCCCTGTATGGTATGCCAGCGAAATTTCATGTCAATAAGGTCTTTAACAGAACATATCACAAATAAACATCCGGAAGTGGAAAAACACAAATGTGATCAATGTGAGAAAACTTTTGTTTTACATGCCCATTTAGTTGAACATTTAAATCGTCATAAAGGCAACAGAAACCTAGTGTGTTTAATATGTGAAAAAGAATTTGGATATAACAATACGCTGAAAGAACATATGCGCACACACAGTGGCGAGAGTCCTTACCTTTGCCCCCAGTGCGGTAAAACATTTCGCAGTGCGAGTAATTTACGTCAACATATAGAAAGGCATACAGGTTTAAAAAAGTATCAGTGTACAGAGTGTCCCAGTCGTTTTAACTGCAGATCAGATTTGATAAAACACGCATCAACACATTCGAATGCAAAGCCTCATGTCTGTGACATTTGCGGCTCCCGCTTCACCAGAGCATATTCTTTGCAAAAGCACAAGCTTCTACATTCGGGAGAAAGACCATTCAAGTGTGATCAATGTAATATGACTTTCGCGATAATTTACCATTTACGGCGTCACATGCGAACCCACACAGGAGAGAAACCCTACAAATGCAAATATTGTGAACGTGCTTATGCTGAAAGCGGAGATTTAACTAAACATTTAAGAACCCATGTTGGcgaaaatacatatatgtgcGATCAATGTCCAATGGCATTTAAATATCAAGCTGAATTAAGACAACATCAATCGCAGCATTACAAAATGGCACAAAAACTTTTACTGCAAACACAAAGGCTGTCCGATGATGCGCGAGATGAAATAACCGAACAAACACAACAAGATCAACCTAATATGGAACATCAATTACAATTTCCAGTACGAGAACAGCAACAACATAATCAACAACCATCGAATCCTGAACAAATACAACATTTGCCTGTAGGGATTCCGAGGTATCAGCAAATACCGTTAGTAGACCACCGGCAACAATTATCGGCAATAGTGGAACAGACTGATAATCAAGCGAAAATCGAAGATATTAATATATCCCGTCAACATCAAGACAGTTAA
Protein Sequence
MSNDFNSKCRTCLSESNVYHQLFDYVEENYKILEMLDGIVPQIDIKTSSQFSTLVCKICVDKLLTGYKFQQLCIETNNRLHDLLGIAVFEAESKLERILDPLTGETNLKMKQEIEEDPCFECEVPPDELMEGMGSDNNSSVPDAGTDTDSSNEKLSVLMKKSVKKSPVKIENFEKFHKLNRRKGHFPDTECRTHFSSLNRLKQHTSIHDKKRCYKCQICNTKIMFKKTFKAHMLTHTNGESDSKNIALLNDGVLNTDSRKNFETQELLDEDQVSDKDGEENVCKDSKEMLTFQCPDCSKCFQKKASFSAHYKVHKKKELLKNKSQAFEPDLKIIEEFNTSSKFQDEKAIDKISKIIVKEEMENPSQLYEGGIDWLNNDYDDSDDNSGNELFVKSEAKNVDFVDTGIGEVEKPNSSNKRNGNFPCEVCGKIFDRPYRLKRHSSVHSLARPHECEICKYRFATANILKAHLFQHTNETGGNLHSQSRPEGFKCPDCPRRFEKQASLSAHRQSHTRNTSESNYPCMVCQRNFMSIRSLTEHITNKHPEVEKHKCDQCEKTFVLHAHLVEHLNRHKGNRNLVCLICEKEFGYNNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHIERHTGLKKYQCTECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCNMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLLQTQRLSDDARDEITEQTQQDQPNMEHQLQFPVREQQQHNQQPSNPEQIQHLPVGIPRYQQIPLVDHRQQLSAIVEQTDNQAKIEDINISRQHQDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397720;
90% Identity
iTF_01397720;
80% Identity
-