Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.8 2.9e+03 -0.1 0.2 15 23 40 48 33 73 0.83

2 8 0.0037 2.2 9.9 1.8 15 43 95 120 83 121 0.82

3 8 0.0043 2.6 9.7 0.4 16 38 124 143 121 147 0.88

4 8 4.6 2.8e+03 -0.0 10.4 14 39 149 183 140 184 0.73

5 8 2.4e-07 0.00015 23.3 1.1 14 44 205 232 192 232 0.84

6 8 0.077 47 5.7 0.0 16 43 239 263 235 264 0.86

7 8 0.078 48 5.6 0.6 18 41 270 290 266 292 0.80

8 8 3.5 2.1e+03 0.4 0.4 18 29 298 309 294 319 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.8	2.9e+03	-0.1	0.2	15	23	40	48	33	73	0.83
2	8	0.0037	2.2	9.9	1.8	15	43	95	120	83	121	0.82
3	8	0.0043	2.6	9.7	0.4	16	38	124	143	121	147	0.88
4	8	4.6	2.8e+03	-0.0	10.4	14	39	149	183	140	184	0.73
5	8	2.4e-07	0.00015	23.3	1.1	14	44	205	232	192	232	0.84
6	8	0.077	47	5.7	0.0	16	43	239	263	235	264	0.86
7	8	0.078	48	5.6	0.6	18	41	270	290	266	292	0.80
8	8	3.5	2.1e+03	0.4	0.4	18	29	298	309	294	319	0.76

Coding Sequence: ATGGAAGAAGACGATCAGAGTGATAGTTCCACAAATGACGATGATACTTCCTCTAATGAGGCTGATTCAggtcaattaactaaattatcAGATGAAGACAAATTCGTagcagaaaattttcaaatcacCTGTGACATTTGTAAAATCCCACTGGATACATTTTCCGCAATGCTCAAACATTATAAAAACGATCACAATCAGCGGGGACATGTTTCTTGTTGTAATTTTAACTTTTACCGGCGTTGTGAATTAATGGATCATATCAGGTTTCACCAAAATCCTgaatattttaaatgcaaacacTGTGACAAAGTATTCCCTAAACGCGCAGGGCTAAAGAGTCATATAGAGAAAGTTCATGAGGCAGAGGTTGTTGAATGTGACATTTGTGGCAAAAGTTATACAAATGAAAAAGGTCTAAAAAAACACAAGAAACTGCACAAAACTGAAGATGTATCTTGTGAAAAATGTGGTAAATCTTATTCATCTAAATACTCCCTAGACAATCACATGCGAGTTGTCCACATTACAAATATAATTTGCCATTTATGTGGCAAATCTGTTATATTACCCGACTTTAAACGTCATATGGCACAGCATGAAGGAAAAACTCCACCAAAGGTAAGCTGTAGAATTTGCGATCGCAAGTTTTCATTTGGGAGTTGTTTATTTCGACACATGCGTACGCAACATCCACCAAAAGGAGCTAAAACTGAATTCAAATGTGCTGAGTGCCCGAAAGTGTTTGCAGCTAATTATAATCTTAAGACGCACATAAGACAAGTGCACGAAAATGCATATGAAAGAAAGTGTATATTGTGTGGTAAAAGAGTCAAAGGATCCGTCGCCCTAAggGAGCACATGTCAAGGCATAAGGGCGAACCCTTATACGTTTGTGGCTTTTGCCCTAGAAAATTTTATGCCAGTGGAAACTTGCACTCGCATCGCAAAACATGTTCTggaaaacgaaaagaaaaaagtgtaaCAAAAAGAACGGAAGATGAATAA
Protein Sequence: MEEDDQSDSSTNDDDTSSNEADSGQLTKLSDEDKFVAENFQITCDICKIPLDTFSAMLKHYKNDHNQRGHVSCCNFNFYRRCELMDHIRFHQNPEYFKCKHCDKVFPKRAGLKSHIEKVHEAEVVECDICGKSYTNEKGLKKHKKLHKTEDVSCEKCGKSYSSKYSLDNHMRVVHITNIICHLCGKSVILPDFKRHMAQHEGKTPPKVSCRICDRKFSFGSCLFRHMRTQHPPKGAKTEFKCAECPKVFAANYNLKTHIRQVHENAYERKCILCGKRVKGSVALREHMSRHKGEPLYVCGFCPRKFYASGNLHSHRKTCSGKRKEKSVTKRTEDE

Sequence clustering based on sequence similarity using MMseqs2