Tfer034958.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999967.1:2930396-2934352[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 2.3 2.6e+02 3.7 2.5 2 23 543 565 543 565 0.95
2 9 0.00054 0.062 15.1 3.8 1 23 572 595 572 595 0.97
3 9 0.019 2.2 10.2 3.9 1 20 600 619 600 622 0.94
4 9 0.001 0.12 14.2 1.4 2 23 636 657 635 657 0.92
5 9 0.0012 0.14 14.1 6.0 1 23 662 684 662 684 0.99
6 9 1.7e-05 0.0019 19.9 0.1 1 23 690 712 690 712 0.97
7 9 0.25 28 6.8 2.3 2 23 718 739 717 739 0.95
8 9 0.0015 0.17 13.7 1.3 1 23 775 798 775 798 0.94
9 9 0.2 23 7.0 6.0 2 21 805 824 804 827 0.94

Sequence Information

Coding Sequence
ATGTTTTGCGCCTTGGGTTGCTCACCAACCAGAAATCTTTATAATTTTCCTAGTCAAAAATACGATAATAAAAGAAGGAAAGCTTGGCtggatttttttgatatggAGGAACCAGATATTGGATTCATCTTCGCTTGTGATCGACATTTTTCACGTTCACAAACCACTGCGAATGGCATTCGAGCAACAGCAGTTCCAGATATACCAATAACTTCCGTTACAACAGTATCACCATTTAGAAGAAAACAGAGGAGCTGGAGGAAAAACGTCGTTGTGGTCACACCTAGGGATCCTGAGTTTACCATATATCGGCATGAAACTGGAGTTTTCCCAcaaaatctatttaatatagATGATGACGTTAAACCTGTAATACAAACCCCAATAATTAAATCAGTCTCTTGCTCGGTATCAACTCAAACTAATTCAAGTCTCTGTGGTTTGGTGCATATTTCAGATGTAAAGGGTCAATATTGCCTCAGTTGTTTTTATTGTAGTGAAATGTTCGCCATAGAAAATTGGTCTAAATTCGtgaatcatataaaaaatcgtcattttgaaaaagaaaaagaaaaatcccTTAAACTCTCAAAATACTTCGTTCAAGATCATGACTATGCATCTATGAATTCACAGGATACGTCAACAACAAACTTTAAAATGGTCAACAATTCTATTACTGCACAGCCGTTTCGACCAGTTTTATTACTACCACCTTTGTTAGCCAAACCTCTAAAACACGCTGAAAAAGTATCTAACATAATGTTTGAAACTCCAGAAAATACCCCGCCACCTTTGCTGGCCAAACCACATGAGTCAAATGAGACAGTTTTTAGCATCAGCTTAGCTGATCAACTTATTAAACTCTTAAATCAAACTGTTTTGAGCCCAACTTTTCTTAACACAGAAGAAGAtaatattttgataataaaGAATACTGGGTCTGACAACATTGAAACaagtaatttcttaaaaaatataatgaatccTGAAAACAGCTTCACCAGTGCTCCTATGCTGTCGAAGACGAGTAGTACACCAACGTCATATTCAAGATATACTCGACCTATCTATACCATAAACAATGGACAATTGGATATTCCGTCAAGAAGACATTCCCTCTCACGTATTTTGGTGCCACCGCTTCCGAAAAGTAAGATGGTGGTTGATATGGAAAATACTAACTTGAATGATTCTACAATTAACAAAGTTAACGAAAAGccaAAATCGAATTTTACACCTTTAAATCGGTGTCTTAGGAGAACCACTTCGAGTACAGCTAAGCAATTACAAGTGAAAATAAACGCCACAGAGATTGTTTTCGAGTATACACCACCCGACATTATTGTGTCACTTCTAGACCGTATGAAAAACTTTCCAGTTTTATGGGAGTTTCATGACCGGCCGTTCAATAATGACTATAATAAAGCCATCGTGGAATTATGTCGATTTATTAACAACAAATGGTCTTTAAATATAACTTTATTGAAAATGAGACGTAGTCTGATTCGCATATTAAGGTTTTATAGATTTATGTTGTCATACGATAGTATTGACAAGTTTGAAGATTACTTCGATAAATGTGCACTTTTTCTTCCTTCATCTGCGGATGCGATTCCGCGGGCACGCTGTCCTTATTGTTGTATATGCTACAATAAAGATGTCGAATTGAGAGTACATGTTAGAGAAAGTCACAAGAGTTCGAAATGGCCTTATAAATGCAAGCATTGCTTCGAACGTTTCCGACAGAGCGATGAATATGAGTTACACAAACGCTTGCCACACTATGAGGAAATATTCAAATGTGAAACTTGTGAAAAAAGGTTCCATCGTCGTAATTTATACAATAAACATGTATGGTCACATCAACGTACAAAAGAAAAACGCCTGGAAGAACCGAGTGTGATGTGTGATGTTTGccacaaacaatttaaaacccTTGCTGATCTAAGAAGCCACAAAGTCTATCACGGGGAGAAAAAGTTCAAATGTCACATGTGCCCTAAAGAGTTTTGCCTAAATATGTCTCTAAAGCTACACTTAAAAAGACATAGGAAAGAATTGGATTTTATTTGTGAAGTTTGCGGAAAAGGTTTTATTCGCAAAGGATATCTAGATGAGCATATGGCCAAACACACTGGCGCTAAAGTCACTTGTAGTATTTGcaatttgaaattaagaaaatgtaGTTTATCGCGCCATCTGCGACTAGTGCATGTTGCACTTGAAGGTACAGTTGAAAGTACATTCAGAAAGAAATCACATCATTataatttaccaaaaaatggaagAAAACGATCCAAGGAAGCAAAGAAGCGTCAATACAATTGCAAAATGTGTAAAATATCTTTTGTAAGTCTTAAACAGCTTAAAGATCATAATAAACAAGCGCATTCTGATGTCAAAAAAACACCTTGTCAAATTTGTAATATAgaatttatacatatgtgtaatCTCAAACGGCATTACCGTTGTAAACATAAATTGCACTCgtttcaaattttcaaattggTCTGTCAGAATGAGGATTTAAATACAGTATTGGCGATGAAAACTAGCGAGCTGGAATCTATGACCCAAGAAGACTTCATGCAACTTTCACAAAATAATCGGGAAAATTCAGAagagaacaattattttgaacaAGGAAGAATGCACAGTGATAAAATACAAGATGAAATAATGAAAGCAGTTGAAAATATCGATGGACAGGAAATCAAAGTTGATGACGACCGTTcaatgaatgatttttttacagatcttttaaaaaatgcttaa
Protein Sequence
MFCALGCSPTRNLYNFPSQKYDNKRRKAWLDFFDMEEPDIGFIFACDRHFSRSQTTANGIRATAVPDIPITSVTTVSPFRRKQRSWRKNVVVVTPRDPEFTIYRHETGVFPQNLFNIDDDVKPVIQTPIIKSVSCSVSTQTNSSLCGLVHISDVKGQYCLSCFYCSEMFAIENWSKFVNHIKNRHFEKEKEKSLKLSKYFVQDHDYASMNSQDTSTTNFKMVNNSITAQPFRPVLLLPPLLAKPLKHAEKVSNIMFETPENTPPPLLAKPHESNETVFSISLADQLIKLLNQTVLSPTFLNTEEDNILIIKNTGSDNIETSNFLKNIMNPENSFTSAPMLSKTSSTPTSYSRYTRPIYTINNGQLDIPSRRHSLSRILVPPLPKSKMVVDMENTNLNDSTINKVNEKPKSNFTPLNRCLRRTTSSTAKQLQVKINATEIVFEYTPPDIIVSLLDRMKNFPVLWEFHDRPFNNDYNKAIVELCRFINNKWSLNITLLKMRRSLIRILRFYRFMLSYDSIDKFEDYFDKCALFLPSSADAIPRARCPYCCICYNKDVELRVHVRESHKSSKWPYKCKHCFERFRQSDEYELHKRLPHYEEIFKCETCEKRFHRRNLYNKHVWSHQRTKEKRLEEPSVMCDVCHKQFKTLADLRSHKVYHGEKKFKCHMCPKEFCLNMSLKLHLKRHRKELDFICEVCGKGFIRKGYLDEHMAKHTGAKVTCSICNLKLRKCSLSRHLRLVHVALEGTVESTFRKKSHHYNLPKNGRKRSKEAKKRQYNCKMCKISFVSLKQLKDHNKQAHSDVKKTPCQICNIEFIHMCNLKRHYRCKHKLHSFQIFKLVCQNEDLNTVLAMKTSELESMTQEDFMQLSQNNRENSEENNYFEQGRMHSDKIQDEIMKAVENIDGQEIKVDDDRSMNDFFTDLLKNA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01399929;
90% Identity
-
80% Identity
-