Basic Information

Insect: Tachina fera
Gene Symbol: -
Assembly: GCA_905220375.1
Location: LR999966.1:115060149-115069638[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.013 1.4 10.8 0.3 1 23 551 573 551 573 0.96

2 7 0.46 53 5.9 0.6 2 19 578 595 577 596 0.97

3 7 8.7e-06 0.001 20.8 0.3 1 23 602 624 602 624 0.99

4 7 0.0044 0.51 12.2 4.2 1 23 634 656 634 656 0.98

5 7 0.0034 0.39 12.6 0.1 2 23 663 684 662 684 0.95

6 7 1.5e-06 0.00018 23.1 1.3 1 23 690 712 690 712 0.98

7 7 6.7e-05 0.0077 18.0 3.5 1 23 718 740 718 740 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.013	1.4	10.8	0.3	1	23	551	573	551	573	0.96
2	7	0.46	53	5.9	0.6	2	19	578	595	577	596	0.97
3	7	8.7e-06	0.001	20.8	0.3	1	23	602	624	602	624	0.99
4	7	0.0044	0.51	12.2	4.2	1	23	634	656	634	656	0.98
5	7	0.0034	0.39	12.6	0.1	2	23	663	684	662	684	0.95
6	7	1.5e-06	0.00018	23.1	1.3	1	23	690	712	690	712	0.98
7	7	6.7e-05	0.0077	18.0	3.5	1	23	718	740	718	740	0.98

Sequence Information

Coding Sequence: atggaTGGCTCTAATAACGCTCCAAGAGGTATATCTTCGCGCAGTCTTCCCTCGATATTTGCAATAAGCAATGGTTCCTCTATGGCTTCTAAAGATTTAGAAGGTCTCATGGCCATGAATGACAGTGCATTGTCGCAACAAATAGAGTTTATCTTACAAGATGCTCCCATGGAGCACGACGACGATGACGACGGCGACAATCATCCTCAACATCATCATCCAAGCAATCAGCAGCAGCAAGTATTATATCAACAACACCAAGTGACTACAAAGTCCGCCATTGAAGTAGGTCATCAAACAATGGACGCAGAAACCAGCAATTCTCAGGGGGCCATATCAGCGACTGCAGCTTCAAAGAAAACGATAGCAGCTGCCATTTACAAAGTAGATACCCCACCGAACTCAAATACACCAAGAACAAGCGCTTCCGATATAAGTCAAACCCGTCAAGATACTACCCAACAATCCATTATAGTTACAACAAAGCTACCACAGCATCATACAAATTCTGTTCAACATCAGCAAcagcaaccacaacaacaacaacaacagcgtCGTCCACAACATAATTTCCTTAATGGTCGTGGTATCATCGTACGTTCTTCGGATTTGCACAACTACAATTCCTTGCAATTGACTGCTGCGACCGCTGCTATGGATCATCAATCTGTGGAAACTGAAGACGATGAAGAAGATCCCGAACTAAATGACGAAAATCTCCAAGACATCGAGGAGGAAGCCAAGGCAGCAGAAGCAGACGAGGAGCCACCACATTTTAATGCCACACAAATAAAAGTTGAAAACATGGAAATACCAACAAACGAAAACACCCCACGATTAGCCTACACCAGTAGCGCCACAACTGTGACCACTACAGATGCTGATGGTCAGCCTACCCAGCTGGTATTACCCGCTGGCTCCATAGTCAGCACCGGTACACGCACTGTAACCGTACCAGTTTCGGAAGCTTTAGCTCATTTTCAAAGACGTCCAGTGTTCATAAGCAATGGTGTGGCCAATATGGGTGGTACCACTTTGGTGCGCATGCCTGCGGTATTGAGTCGCAACGGCTCTATGGCAGTTTTGAATGTAGTACAACAACAAGTAGGTGCTAATGGACAAACGACACAACTTATACTACAGGCAGCACCCATGGGTAGCGTTTCCACTGCGACAGCAACTCCAATAATGGTAACTACTTCTCAGCAAACGCAGCAAAATCACCAGCATACAAATGCGCCGTCGGACAATACAGGGAACGCGTCACCAATTTCCACAATAACACAAACTTCCAATGCGcatcaaataataacaaatgctTTAACGACCAATCAACAAACACAACTGCAACAAGCGCACCAATCGCAACAAACAACTACAATAATGACTGTGAACAATGGCTCAACTAAACCTTCCTCACCAACGGCGTCCTCTGTTGTAAGTGCTGCCATATCGGCACATGCCCGTTCATCATCTTCATCAATACACTCAAATCCACAGCAGCATCCCATTGCCTCAACTTCAGCCCAAGCCCAGGCCGCTTACATACGCAATACAGCCTCAACATCGCCAACCTCGTCCTCATCGTCTGCTTCTCCATCGTCCATCGTCTCAACCCCACCAGGACCGACAACAGTCAGCAGCACAATTTATCAATGCATGGAATGTGTCGAGAAATTCGACAACAAAGAACTCTTCGAGATTCATCGTTCCGGTCATGCCAACAACATGAAGTGCGCCATTTGCAACATGGTCTTGAAATCATTGAAAAACTATGAGAAACACTGTCTACGCTGCAAACCGTACGAATGTCAAATCTGTGGCCGTGTCGTCCGCTTTCGTCCCAATTTCATCAAACACATGCGTGTGCACACCGGACAACAGTCCGAACGTCACAAGTACAAGTGCGAAGTGTGCCACAAGGAATTCATGAGCTTCGAATATTTTAAAGTCCACAAAAAGATACACAATGAAAATGTCAATTTAACTTGTGAAATATGTGGCAAACAATTTAGTGCTTTGGCGTCATTGCGGGGCCACTCGAAATTGCATTCGGGCGTAAAGTTGCACAAATGCGAAGTTTGCGGTAAAGGCTTTGGCCAACGTTACAATCTTAAAATTCATGCTCGCACTCATACTGGCGATTTTCCATTCGaatgtaaaatttgtaaaaagaaGTTGCACACTCAATCATCGTTGCAAACACACATGCAGGTCCATCAACGTGTTCAAACGTCTCAAGCAACGTCGACCATTAAATCAACAGCCACCAGTACGACAACAAGTGGCAACACAAGTTCCAGCAGCAGCTCAAGCAGTGCCCACAATTCGCCAACTTCGACCATCATTAAAATGGAACCACAATTATCCGAACCCAATCCACTTGAAATGCCCAGCACAAGCAGCAATGTTCTACTAAGTCAACACTCGATGCACGATGATTTAGATGAGAACTCGGCCATGAGTGATGGACTCAATTCTTTGAATGGTCATCAGTATGTAACAACTAGTTGCGTTAAGAAATCAATTGTCTCAGCCACCGGCGATGAGTCATCCAACTCATCGAACACATCTCAAGAACAATTGCGACAGACCAGACAGATTCTCTTGAATGGGGCCACACCAACACGAGCCATTGTGATTAACAACTATTTgcataataatgataataaaggTGTTGACACTCTCTTGTCGCAAACGTCACAGCCGCAACATCATGCTCAAGTTATACGCCACAATAATAGCAGCAATGCCAGTCATATTAtcaccagcagcagcagcactAGTGCATTGCAGCAGCAATTGATGCGTAAAACTCCTATTATACATTCGACTGGTGGTGCAACATCATTAATAAGTTCAGTATTTGCCAGTGCCATTCGTCATAGAGGCACTTCACCATCTCCATCGCCCTCTTCTTCATCGACATCATGTTCCTCTTCCGTTGTGGTCTCTAAATCCGGAGTACCCCTGTCATTGGCCTCGGCCGCCCTGGGTTCCTCATCAATAATACGCAGTACACGTGATCATGATGCAAGTCTCAATGGTCACCATCATCTCCATCATCAAAATCATCATCAACGCAGTAACCACCGAAATCACCACCGGCGTCGTCATCTGGCCGATATGGATGACGATGATGACACAAACTTGCATCATCCGAGTGTCAACAATGGACGTCATTTTGATGACGACGATGATATGTTGGATGAGAAATCTTCCCCGTCCCTGGCCACTACAGCCATTAAAACCGAACCGAATTTCTATGCATCTGGTGATAATTCCAATGAAATGTTGATCAAAGAAGAGGTTGTATTCGATGATGCCTCCGCCAATTCGCCTCACTCGCCACCTATTTCAAAATTTGGCATGTCCAATTTCGATAATGATCTCGATCACCATGTCGACTTGGCCCATTCGTTACCAACTTATGGTTATCTACTGGATCAGCACTCGATACCCGATACAATACCAACACAATTGTACGCGGACGATGATGATTTTCGATTAGATCACAATTCGCTGGGACCGCTACACAATAATTCCTCATCGACTAATGACGCCGATTATATCAAGAAGGAGTGGAGTTATGGCACAAGTTCGAATTACACAATAAATGGCAAATTTGACGATGACAGCAATGCCTTGTGCGATGCCGCCAATTTCATCTATAATTGA
Protein Sequence: MDGSNNAPRGISSRSLPSIFAISNGSSMASKDLEGLMAMNDSALSQQIEFILQDAPMEHDDDDDGDNHPQHHHPSNQQQQVLYQQHQVTTKSAIEVGHQTMDAETSNSQGAISATAASKKTIAAAIYKVDTPPNSNTPRTSASDISQTRQDTTQQSIIVTTKLPQHHTNSVQHQQQQPQQQQQQRRPQHNFLNGRGIIVRSSDLHNYNSLQLTAATAAMDHQSVETEDDEEDPELNDENLQDIEEEAKAAEADEEPPHFNATQIKVENMEIPTNENTPRLAYTSSATTVTTTDADGQPTQLVLPAGSIVSTGTRTVTVPVSEALAHFQRRPVFISNGVANMGGTTLVRMPAVLSRNGSMAVLNVVQQQVGANGQTTQLILQAAPMGSVSTATATPIMVTTSQQTQQNHQHTNAPSDNTGNASPISTITQTSNAHQIITNALTTNQQTQLQQAHQSQQTTTIMTVNNGSTKPSSPTASSVVSAAISAHARSSSSSIHSNPQQHPIASTSAQAQAAYIRNTASTSPTSSSSSASPSSIVSTPPGPTTVSSTIYQCMECVEKFDNKELFEIHRSGHANNMKCAICNMVLKSLKNYEKHCLRCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKIHNENVNLTCEICGKQFSALASLRGHSKLHSGVKLHKCEVCGKGFGQRYNLKIHARTHTGDFPFECKICKKKLHTQSSLQTHMQVHQRVQTSQATSTIKSTATSTTTSGNTSSSSSSSSAHNSPTSTIIKMEPQLSEPNPLEMPSTSSNVLLSQHSMHDDLDENSAMSDGLNSLNGHQYVTTSCVKKSIVSATGDESSNSSNTSQEQLRQTRQILLNGATPTRAIVINNYLHNNDNKGVDTLLSQTSQPQHHAQVIRHNNSSNASHIITSSSSTSALQQQLMRKTPIIHSTGGATSLISSVFASAIRHRGTSPSPSPSSSSTSCSSSVVVSKSGVPLSLASAALGSSSIIRSTRDHDASLNGHHHLHHQNHHQRSNHRNHHRRRHLADMDDDDDTNLHHPSVNNGRHFDDDDDMLDEKSSPSLATTAIKTEPNFYASGDNSNEMLIKEEVVFDDASANSPHSPPISKFGMSNFDNDLDHHVDLAHSLPTYGYLLDQHSIPDTIPTQLYADDDDFRLDHNSLGPLHNNSSSTNDADYIKKEWSYGTSSNYTINGKFDDDSNALCDAANFIYN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260204;
90% Identity: iTF_01399901;
80% Identity: -