Tfer034473.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121737679-121749231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.082 9.4 8.2 1.8 1 23 272 295 272 295 0.96 2 15 0.54 62 5.7 2.3 1 23 301 324 301 324 0.96 3 15 0.13 15 7.6 0.6 2 23 355 376 355 376 0.96 4 15 0.055 6.3 8.8 0.5 1 23 453 476 453 476 0.97 5 15 6.7 7.7e+02 2.2 0.5 1 19 513 531 513 533 0.89 6 15 0.0091 1.1 11.2 0.3 2 20 565 583 564 586 0.94 7 15 0.013 1.5 10.8 3.5 1 23 659 682 659 682 0.95 8 15 0.0022 0.26 13.2 0.4 1 22 689 710 689 710 0.96 9 15 4.4e-05 0.0051 18.5 1.6 2 23 767 788 766 788 0.95 10 15 3.7 4.3e+02 3.0 0.3 3 19 816 832 814 835 0.84 11 15 0.00025 0.028 16.2 6.6 1 23 881 904 881 904 0.98 12 15 0.0096 1.1 11.2 2.3 1 23 941 964 941 964 0.97 13 15 2.2 2.6e+02 3.7 0.2 1 23 1027 1048 1027 1048 0.87 14 15 0.00016 0.018 16.8 4.4 1 23 1054 1077 1054 1077 0.98 15 15 0.00026 0.03 16.1 1.3 2 23 1084 1105 1083 1105 0.97
Sequence Information
- Coding Sequence
- ATGAGCGAATGTTTTATTGATGGTGTGCTGTATAAATGTCGTACTTGCTTTGATCCTGCAATAACAGTATATGATCTTTCAGAGGAGTGCAGCAATTCCAGAACTTGTCAAGATCTGTTGAATTATATTGTTAAGTTAAAGACAAAAGATGAGTTACTTCCAAAGACGATTTGTTCGAAATGTTTGGACAAACTTATCACTTGCTACGATTTTATACTTCATATTCAAAATGTGAATGAAAGGTACCACCAACTTTTGGCAAGTGGCAAGCATTCTTCAGAAAATGATAATCTTGCTAGCAGCTctaaaaatgttacaaaatgcTTGGTAGAATCTGCCACTGCCTTGCCTTTGGATCCGTGTGTTTCTGAAATTAAGTGTGAAGACGAACACTTTATGTCTTACGATATTGTTTTAAATAGCTCCGATACCAGCAGTAATTCGGCCAAAGaagatACTTGTGATTCTTCAATGGAAACTTCGAATATGGATTTTGAACTCACCTTAGATAATTTGGAAACCCCACAaagatccttaaaagaagaaataaatcaAGTTCTTGAAGATGCTCTTAATGATTATTATTCCGATAGCagTCAGCGATCCGATAAAATAAAGAATGACAGAGATAAAATTGATGAACAGCCCAAAATTGTTCGTGAGCACATGGAAGATAAGCACGAAAAGGAAAATGATAATCCACGAAATAAGCTGAGgaCCTCGTCCTCCAATAAGAGTGAAAAACACCCAAGCAATAGAATGTGTGAAGAAGAATTCTACAATCACTTTCTAATCGAAAAAGTGGAGGGTGGTTTCGCCTGTGGCGTGTGCAAAATCTCATTTAATAAGCAGCAATCTTGTCGGAATCACATAATTACAATGCACTACcaagaaaaaatgtttacatGTGGATTTTGTGGAGTAGATGCGAAGCATAAGTATAACTTAATTCCACATATTAAAAATTGTCATCCAGGCGAGTCACTTGAATCCAATAAAAAGGTATTAGGTCGTTTATTTGGAGAATGTCTATATAGAAAGCCTCTTATATGGGCACGTGCGGAATGTAAGCTGTGTGCTTCTACCTTTATGACTAAAAAAGCACTTCTTCAGCACTTAGATAGCCATAGTGAGGCCAGTACTcttgataaattaaaattaagcagTGATGTTATTCGGCGTTGGTTTTTAAATATGAGCGATTTGGAagacataaaaacaataatatgcaaagatattcgagaaaaaaactggatcaaatattacacaattttaaatgaCTTTTCCTATGAAATATCCATTAGTGATACGGATGCAGAAGATTTGGAAGAAGAAACAGAAGTGCCTGCCAACAAATATGAGTGCGAATTGTGTGCAAAAGATTTTCTGTACAAATATCAAGTGTTTGCTCATATGAGAGAGAATCATTTGAACGAAGAAACTCCTTTGAAATGTATCCATTGCAAGATGGAATTTATATCAATAGAAATGTATGAACAACACAAACACACTCACTGTCGAAATAAACATAAACTATTTATGTGTCCTAATTGTCCTGGCAAGTTTGTTTGGCTCGAAAATATGAGAAAACACAATTGTGCGagtaaaatattaagttttgaaaaatttctaaaagatAAAATTAATGCACGCTATAATGAATTAATCCGTTCATCGCCAAAAACTATCATAAGATGTGGTCTTTGTGAAATTACCTTTAAAAAATTGCGCGATTTACGACAACACATGCCTTTGCATGCCGATGGAAAAACTGGAGTTGACTTTAATGGCTGCATTTATGTAAACCAATTTGAAAAGTTATCCAGCAATCGCGAGATGTTGCAACAGAAGATTAAAAATGCCTTTATGGAACGTCAAATAAGTCAGCTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAGATGATGCTGATGGTGAAACAAACTATTTCTGCGAACTTTGCtatgaaaagtttaaaaagcgAAAACTTCTTTTCAATCATCAAAAGGAACAACACATGGATGTTTCAATGCCTTACACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGttacaaaaacatataaaaagggAATGTTGGAATGAACACCGACAAGTGGGTGAAAAATGCGGTTGTTGTAAAGAGCTTTTTATATGGCCGGAAAATTTGTTGAGACATAAAGAAATacagGTCGTGCGTTGTTCACAGGTAAAGAAACCAATGGCTTCATCAAACTCAAGTGATAATAtccaaatttgttattgtttcctATGTCCTAAAACTTTTTCTAATCCTAatgatttaattaaacatttggaGAGTCATCGGTTCACGCCATCCACCATCAAAACTGTTGCAAGCACAATACATTCTACATGGTGGCCAAATGGCAGTAAGATCATAAATTGCAAAATGTGTCATGAAGTATTTTTAAGTATGGCCAAATTGAATGAACATTTCTCTtctaaaaatcccaaaaacttgTGTGGTGGAAGACAACATTCTCTGGCAAATTACTCGATTACTAATCAAATCGGGTTTGAGTTACATTTAGAGCTAGATTCGGAGACAGACAATGAAGAAAATGAAAAGATATTGCCATATAAATGTTGCTTGTGTAATAAATCATTTAAGCGAAAATATCAAATATCTCAACATCAAAGATCCATGCACAATTATGAAATGTTGGAACTGAAATGTGAACGTTGTTTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAAGGTAAGCCAGTGTTTTAATGTTGAGAAATTGTACCAGTGCCATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTTGAAAAtcatatatcgatatttcataCTTCGAACGTTTTCGTCAAAGAACTGAATGAGGGCAGCGCAACGAtattatatgaaggaaccaATATTAATGATCAATGCCCGGAATCAGAAAAATCTTCTCAAAATGATTTGTCGTCAGCATTACGTCAAAACGATTCTGATTCCGATTCCGATGCAAACAACTGCAATCAATATAAAGATAAATATCAATGTCTCATTTGTGGAATTTAcattatcaaaaattattatgcaGCACACATTAGAAGACACAAATGTAACAAATCTTACAAATGCGATTTTTGCGAAAGGGCCTTTATAAAAAAGTCCTCCTTACATAAACATAAGCGGCGCATACATACGGAACATCATCATATCAAATGTACACTTTGCGAGAAATTCTTTGTCAATGGAAGGAAATTAAAAGAACACATGCGCTCTCACACTGGCGAACGTCCATACCAGAGCACTAtttgtcgaaaaaaatttatatctgattccgttttgaagaaaaattcaattaagcattaa
- Protein Sequence
- MSECFIDGVLYKCRTCFDPAITVYDLSEECSNSRTCQDLLNYIVKLKTKDELLPKTICSKCLDKLITCYDFILHIQNVNERYHQLLASGKHSSENDNLASSSKNVTKCLVESATALPLDPCVSEIKCEDEHFMSYDIVLNSSDTSSNSAKEDTCDSSMETSNMDFELTLDNLETPQRSLKEEINQVLEDALNDYYSDSSQRSDKIKNDRDKIDEQPKIVREHMEDKHEKENDNPRNKLRTSSSNKSEKHPSNRMCEEEFYNHFLIEKVEGGFACGVCKISFNKQQSCRNHIITMHYQEKMFTCGFCGVDAKHKYNLIPHIKNCHPGESLESNKKVLGRLFGECLYRKPLIWARAECKLCASTFMTKKALLQHLDSHSEASTLDKLKLSSDVIRRWFLNMSDLEDIKTIICKDIREKNWIKYYTILNDFSYEISISDTDAEDLEEETEVPANKYECELCAKDFLYKYQVFAHMRENHLNEETPLKCIHCKMEFISIEMYEQHKHTHCRNKHKLFMCPNCPGKFVWLENMRKHNCASKILSFEKFLKDKINARYNELIRSSPKTIIRCGLCEITFKKLRDLRQHMPLHADGKTGVDFNGCIYVNQFEKLSSNREMLQQKIKNAFMERQISQLYQAIDKDGKEMDISDSDSDEDDADGETNYFCELCYEKFKKRKLLFNHQKEQHMDVSMPYTCKECKMQYVSIDLLQKHIKRECWNEHRQVGEKCGCCKELFIWPENLLRHKEIQVVRCSQVKKPMASSNSSDNIQICYCFLCPKTFSNPNDLIKHLESHRFTPSTIKTVASTIHSTWWPNGSKIINCKMCHEVFLSMAKLNEHFSSKNPKNLCGGRQHSLANYSITNQIGFELHLELDSETDNEENEKILPYKCCLCNKSFKRKYQISQHQRSMHNYEMLELKCERCFFRTVSQKVLDYHKVSQCFNVEKLYQCHQCNFKFMWQENLENHISIFHTSNVFVKELNEGSATILYEGTNINDQCPESEKSSQNDLSSALRQNDSDSDSDANNCNQYKDKYQCLICGIYIIKNYYAAHIRRHKCNKSYKCDFCERAFIKKSSLHKHKRRIHTEHHHIKCTLCEKFFVNGRKLKEHMRSHTGERPYQSTICRKKFISDSVLKKNSIKH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -