Tfer034452.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121558796-121566263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.5 58 5.8 1.5 1 23 262 285 262 285 0.88 2 14 1.3e-06 0.00015 23.3 0.3 1 23 291 314 291 314 0.97 3 14 0.026 3 9.8 0.6 2 20 344 362 343 365 0.94 4 14 0.011 1.3 10.9 0.8 1 23 442 465 442 465 0.96 5 14 0.18 21 7.2 2.6 2 23 473 494 472 494 0.97 6 14 0.00038 0.044 15.6 0.8 3 23 540 560 538 560 0.97 7 14 0.00019 0.022 16.6 2.5 1 23 640 663 640 663 0.96 8 14 0.0023 0.27 13.1 0.3 1 20 670 689 670 691 0.95 9 14 0.063 7.3 8.6 0.2 2 23 703 725 702 725 0.94 10 14 0.00027 0.032 16.0 0.4 2 23 740 761 739 761 0.97 11 14 2e-07 2.3e-05 25.9 1.9 1 23 767 789 767 789 0.98 12 14 7.8 9e+02 2.0 2.2 2 23 821 842 820 842 0.80 13 14 0.042 4.9 9.2 2.8 1 23 940 964 940 964 0.96 14 14 5.3 6.1e+02 2.6 1.3 1 23 1001 1024 1001 1024 0.92
Sequence Information
- Coding Sequence
- ATGGATAGCGATATAAAGACTGATTGTTTCATAAATGGAGTGCAATATAAATGTCGCACTTGTTTTGATCCTGGACGCACAGTGTACTCCCTTAGAGATGAGTGCTGCATCGCGAAAAACTGGTGTGATTTAATAAAGGATGTTGCACAATTGCAGATAAGTGACAATGATTTACTTCCAAATACTATATGCTGCAAATGCTCAGTTAAACTAAAAAGTTCCTACGATTTTATTCTTCAAGTTCATAAAACGAATGCAAAATATTCTCAGCTATTAGCCATTTGTAACGACCCCCTTCAGGATTATGTTCCTCCGACAGGGTTAGATAATTTAAATGACTGTTTAGCTGAATCAACAATAGATTTACCATTGAACCAGTATATACCAGAAATAAAGCTAGAGGAAGATTTTCCAGATTCATACAAGGTTAATCTGAACAGCATTTCAGCTGGGAACATAGAAACAAAATTCGAAAACCAAAgTTTAAGAAGTTCTCGAGATTCTTTAGGGTATAACGAAGATTTAAAGTCAACATCGGAAGAAATAGAAGACGGCAAGAAATTACGGAAAACTAGaAAAACTCGCAATTTAGCTGTTGATCGCGATGACAACGATTACAACAATGACTTCAGttcATCGTCTAATGAAAGCGATTATATTccattaaagaaattaaaacaggAAAAAGTCAAAACTGTTAACGATGGCAGTCAACCAGTGAAAAGGAAAAAAGGTCGACAAGCTCCAGACTATTATGATAAAATAGAAAAGGTCAACGATCGATTTTTGTGTCTAATATGTCAAAAAACATTTTCCTTGAGAAAAGATTGCGGTCGGCACATAGCATCGATACACTTGCGCCGAACCCCATTCCCTTGTGCAATTTGTGGACAAAGTTTTGCTCGAAAGGACAAATTACAAAGGCACGTTAAACGTATACATTCGGGTGGAGTAGTATATCCATCCAATCATAAGGAATGGTTATTTGGCGATCGTTTGTACCACAAACCCACTGCTTGGACTCTTGTGCAATGTAATTTATGCGATTCTAAATTTAAAACGACGAAAGAACTTCGTCTGCATTTACCGGAACACAGTAATTTTGATTCTCTTCATAAATTAGAGTTAAGCAGTGACTTTATTCAACATTTGTACGGAAATATGACTGAATTAAACATCGTCAAAGAAAGCATTTGCAAAGACATTCGCGATAAACAATGGTTTAAATACTATACTGTTTTAAATAAGTTCTCTTATGAAATGTCTATTAGTGATACGGAAAGCGAAGATGCAGAAGAAGAAACTTCAGAGACAGCCAACAAATACAAATGTGATTTGTGTGCACaggtattttcatttaaataccaAGCTTTTTCCCATTTAAAGGAGGCTCATAGCGAAGATGAAATTCCTCTGAAGTGTAATCTTTGTAAGCtggaatttatttcaattaaaatgtatGAGCATCATTCCAAAACTCATTGTCGTAATAGACATAAGGTTTTGCTTTGTGCACACTGTCCGGCCAAATTTGTTTGgccaaaaaatatgaaaaatcacaATTGCGCTACCAAACTTCAACTCATCCTACCGCCACCTACTAAGGAACAAATGGCGTGTAATATATGCGATCGTAAATTTGAGGTGAAGACGAAATTTGAAAAGCATTTAGAAACACATAAGGATGGCAGGCTCACTGGCATTGATTTTAAAGGCAGTATATATTTGAAACGTTTTGAACGTTCGAAATCTATTGATTTTGCTCTACTACAACAGGAAATTCAAAATGCTTATAGAAAATCTCAAATAAGCCGTTTTTATCGAGCTATTGATAGGGATGGAAATGAAATGGATATTTTAGATTCGGATAGCGACGCTGAAGGAGACAATCATAATGAGGCAATTGTTGAAAACGAATATAGTTGTCAACTGTGTGGTGCTGCTTATAAAAGACGAAAACATTTACTAAATCATCAGCGCGATAAGCACATCGGCGTACCACTTCCTTTTACATGCAAAGATTGTACTCAACAATATGTAAgtaatgatttgttacagcaacactTGGTAAGAGATTGTTGGAATGAACACCGACGAATTGCGCAGCAATGTGACTATTGTAATGCTCGGTTTATATGGCCAAATAATCTACTAAAGCATAAAGAAATTCAGcataaaaatcagaaactccCAAAACCTCAAAGAGCCAGTACTCTTAAATGTGAATACTGCGAAAAGGTATTCATATGGCCTAAAGATTTGGTGCGCCATAGGAAAACGCACACTGAAGGCAAAAAATTCACATGTCCGCACTGCGATCGAAAATTTCAGCGTAAAGACAATTTACTGGCTCACATAAGAATACATTGTCCTGATGGCATACCAACGATATTAAATCCGGGCAAAAGTATCGATTACATTCTGCCGCATTTAATAAAACCACATGGATGCAAACGCATCAAATGTATGATCTGCTTTTCAGAACACAATCGTGTGCGCGACTTAAGATCACATTTGCGAACACATCGTTATACAGTTAGTTTCGATAAACGAAAAGAAATTGAAACTTTGGATACTATATCATCTCAGCTCTATCCTGATGAACTGGTGCCTCTATCAGAGGAGATTTTAAGGAAGCGTATTAATGTTGATATTGCAGCTGAAAATAACTTGGAACGCTTTTATTCTATAACAAATGAAAATGGCTATGAAGTTTCATTAGACAGTTCTGAAACGGAAAGTGATTCAGATGATAACgataaagaagaagaagaagacaaAGAAGTGGTAGAAGACAACGACAAATCCAAACGTATTTACAAATGCGATTTGTGTCCTCAATTAAGTTTTAATcgtaaatataaactttttgctcatcacaacaatgaacatacatggGAGGACGCTCGACACGTTTGTATATATTGCAATGCCCGATTTCTTTCGTCATACATGCTGCAACTGCATTATAAGGACCAGTGTAAAAATACCAAGAAACGTCACTTTTGTCGCCGCTGTCCTTTACgttttatgtggaaaaataatATGAAGGCTCATATCGTAATGGAACATGGTCACGAAGTGAGTTTACAAGTAGATTTTATATACACTACGCAACAAAAGTCTAAGGACgattattaa
- Protein Sequence
- MDSDIKTDCFINGVQYKCRTCFDPGRTVYSLRDECCIAKNWCDLIKDVAQLQISDNDLLPNTICCKCSVKLKSSYDFILQVHKTNAKYSQLLAICNDPLQDYVPPTGLDNLNDCLAESTIDLPLNQYIPEIKLEEDFPDSYKVNLNSISAGNIETKFENQSLRSSRDSLGYNEDLKSTSEEIEDGKKLRKTRKTRNLAVDRDDNDYNNDFSSSSNESDYIPLKKLKQEKVKTVNDGSQPVKRKKGRQAPDYYDKIEKVNDRFLCLICQKTFSLRKDCGRHIASIHLRRTPFPCAICGQSFARKDKLQRHVKRIHSGGVVYPSNHKEWLFGDRLYHKPTAWTLVQCNLCDSKFKTTKELRLHLPEHSNFDSLHKLELSSDFIQHLYGNMTELNIVKESICKDIRDKQWFKYYTVLNKFSYEMSISDTESEDAEEETSETANKYKCDLCAQVFSFKYQAFSHLKEAHSEDEIPLKCNLCKLEFISIKMYEHHSKTHCRNRHKVLLCAHCPAKFVWPKNMKNHNCATKLQLILPPPTKEQMACNICDRKFEVKTKFEKHLETHKDGRLTGIDFKGSIYLKRFERSKSIDFALLQQEIQNAYRKSQISRFYRAIDRDGNEMDILDSDSDAEGDNHNEAIVENEYSCQLCGAAYKRRKHLLNHQRDKHIGVPLPFTCKDCTQQYVSNDLLQQHLVRDCWNEHRRIAQQCDYCNARFIWPNNLLKHKEIQHKNQKLPKPQRASTLKCEYCEKVFIWPKDLVRHRKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCPDGIPTILNPGKSIDYILPHLIKPHGCKRIKCMICFSEHNRVRDLRSHLRTHRYTVSFDKRKEIETLDTISSQLYPDELVPLSEEILRKRINVDIAAENNLERFYSITNENGYEVSLDSSETESDSDDNDKEEEEDKEVVEDNDKSKRIYKCDLCPQLSFNRKYKLFAHHNNEHTWEDARHVCIYCNARFLSSYMLQLHYKDQCKNTKKRHFCRRCPLRFMWKNNMKAHIVMEHGHEVSLQVDFIYTTQQKSKDDY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -