Basic Information

Insect: Tachina fera
Gene Symbol: -
Assembly: GCA_905220375.1
Location: LR999966.1:82586215-82589474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 12 7.9 2.2 2 23 97 119 97 119 0.95

2 10 0.2 23 7.0 3.7 1 23 125 148 125 148 0.96

3 10 0.00012 0.013 17.2 6.5 1 23 241 263 241 263 0.98

4 10 0.0043 0.49 12.3 0.4 1 22 370 391 370 394 0.91

5 10 1.7e-05 0.002 19.8 0.6 3 23 401 421 400 421 0.97

6 10 8.3e-06 0.00095 20.8 3.8 1 23 427 450 427 450 0.96

7 10 0.0059 0.68 11.8 1.8 1 23 459 481 459 481 0.98

8 10 2.8e-06 0.00032 22.3 2.1 1 23 487 509 487 509 0.98

9 10 0.61 70 5.5 0.2 2 23 516 537 515 537 0.93

10 10 5.7e-06 0.00066 21.3 3.3 1 23 543 565 543 565 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	12	7.9	2.2	2	23	97	119	97	119	0.95
2	10	0.2	23	7.0	3.7	1	23	125	148	125	148	0.96
3	10	0.00012	0.013	17.2	6.5	1	23	241	263	241	263	0.98
4	10	0.0043	0.49	12.3	0.4	1	22	370	391	370	394	0.91
5	10	1.7e-05	0.002	19.8	0.6	3	23	401	421	400	421	0.97
6	10	8.3e-06	0.00095	20.8	3.8	1	23	427	450	427	450	0.96
7	10	0.0059	0.68	11.8	1.8	1	23	459	481	459	481	0.98
8	10	2.8e-06	0.00032	22.3	2.1	1	23	487	509	487	509	0.98
9	10	0.61	70	5.5	0.2	2	23	516	537	515	537	0.93
10	10	5.7e-06	0.00066	21.3	3.3	1	23	543	565	543	565	0.96

Sequence Information

Coding Sequence: ATGAGAAATCCATTAGTTGAAAATCATACAACTACGTCGCTTTTACAGAATCGTGATACAATATCAGAAGCCACAAGCTCTAATATTGCAAACGAAGTTATAGATTTAGTAGAAGATTCGAATCAGATGGATGGGAATATGGTTAATCCCGATGCGGGTTATGTTGTAAATTTAAGCGACGAAGACGAAATATGTGGGAATGATAGTGTTTTGGACATTTCGCAAGTAGACACTAATCCAGtggaatttaaaacaaatcataaaggaaaaatttattcaattgaGAATGTGTGTGTTATCTGTAAAAagACGTTTTCTTGCCAAAGAGAATTTGGTAAACATGCCCAAACAGATCATCCAAATGAAAAAGCGTTCAAGTGTCAGCATTGTCCTGCGTTATTTTCCAAATTCAAATCAGTTACTGCACACTTCAACAGAAGACATGCCCTCTTGGATAAGACCCGATCAATACATTCGAATTCACAAAGGTTTGGGGCGACGGATGCAAAtcgaaaaggaaaaaattatccaattgaaaataaatgtgCTGTTTGTGAAAAGGTAgACGAGCTTTGCGATAATGAGGATCAAAATCTATGCGAAAATTATGAACAAAATCTATTAACTTTGTCATCAGAAAATGACGACGAGGAAATAAATACATCAGAAATCGTATCTGCAGATGGAAATTCCAATGATGTAACGTATCAGCAGTATCCTTTTAAATGTAATGAATGCCATAAAGCTTTCAAATATGAGAAAAACTTTAACTATcatcaaaaaaatcaccgaacAAATAATGACGCAGCAGATACCATAATTCTGGATAATACAATGGCGTATGATCagaacataaatttttacaatagcACTTACTTTATAATAGATGAATTAAATACGGACAGTGAACAATTTGAGAATTTTGGTGAAGAATCATTTCCCAACGCAAACTATTCGGAAGAATATGGTTATGAAGATTTTGCTCCAGGAAGTACGCAAACCACTGCAGATCTTTCCCAAAATCAATGCGGTATTTGTATGAAAGTATTTAAATGCCAGCAAGCCGTGGGCAAACACTTATCCCGTTGTCATCCAGAGATTGACTTTTACAAATGTCCATATTGTGACGACAATTTCTATAGCTTAGATGCATTATCAATGCACATAACTGTGAAAAAGCATAATCAAAAACGAAATATATGTGAAATGTGTCTTAAGTCCTTTAATCGCAGGGGCGATTTGAGGCGGCACGCGAGAATTCATACTGATGAACGCCCTTATTCTTGTAATGTTTGTAGCAAAACCTTTAAGCAGACTAATCATTTAAGACGTCATCAGGAAataagtcatgaaaatgtagaagaAATCGTGAAATTTAATTGTCACCTTTGTCCGAGAACTCTGTTAACGGAAGAATCACTAAAACGTCACGTAAGGTCACATGATAAAAAAACACAGTATCCTTGTTCAATGTGCAGTAAATCATTCAAAAGTAGATATGAATGGCAGCGGCATCAGTCAACTCATAgttcaagaaaatatttaatatgtgaATTTTGTTTAAGGTCCTTTAATGATGTACAAACTTTTGATCTTCATCTTTTGGAACATATCGGCGaacgaaaatatttatgtacaattTGCGACAAGTCATACAGAGAGAAGAGTCATTTAATTAGTCACCGAAAGACCCAcacaaaatgctaa
Protein Sequence: MRNPLVENHTTTSLLQNRDTISEATSSNIANEVIDLVEDSNQMDGNMVNPDAGYVVNLSDEDEICGNDSVLDISQVDTNPVEFKTNHKGKIYSIENVCVICKKTFSCQREFGKHAQTDHPNEKAFKCQHCPALFSKFKSVTAHFNRRHALLDKTRSIHSNSQRFGATDANRKGKNYPIENKCAVCEKVDELCDNEDQNLCENYEQNLLTLSSENDDEEINTSEIVSADGNSNDVTYQQYPFKCNECHKAFKYEKNFNYHQKNHRTNNDAADTIILDNTMAYDQNINFYNSTYFIIDELNTDSEQFENFGEESFPNANYSEEYGYEDFAPGSTQTTADLSQNQCGICMKVFKCQQAVGKHLSRCHPEIDFYKCPYCDDNFYSLDALSMHITVKKHNQKRNICEMCLKSFNRRGDLRRHARIHTDERPYSCNVCSKTFKQTNHLRRHQEISHENVEEIVKFNCHLCPRTLLTEESLKRHVRSHDKKTQYPCSMCSKSFKSRYEWQRHQSTHSSRKYLICEFCLRSFNDVQTFDLHLLEHIGERKYLCTICDKSYREKSHLISHRKTHTKC*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01074840;
90% Identity: -
80% Identity: -