Tfer033011.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- Tf2-11
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:81999780-82015906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.1e-05 0.0048 18.6 3.1 1 23 356 378 356 378 0.95 2 9 0.2 23 7.0 0.6 2 23 387 408 386 408 0.97 3 9 0.00012 0.014 17.1 0.9 2 23 414 436 413 436 0.89 4 9 5.8e-06 0.00067 21.3 0.5 2 23 443 464 442 464 0.96 5 9 1e-05 0.0012 20.5 1.8 1 23 470 493 470 493 0.98 6 9 0.13 15 7.6 3.3 2 23 536 557 536 557 0.96 7 9 1.4e-05 0.0016 20.1 1.5 2 23 563 585 562 585 0.92 8 9 6.9e-06 0.0008 21.1 0.6 2 23 592 613 591 613 0.96 9 9 7.1e-05 0.0081 17.9 3.6 1 23 619 642 619 642 0.98
Sequence Information
- Coding Sequence
- ATGAGACGTTTCCATGAAGAGAACTGTCATGTCGGATGGGAAAAGACTCTTATGAAGATGCGAGAGCATTTTTGGATGCCGCATATGACTAAAAATGTCAGGAAATTTGTGAATTCTTGTTTAATCTGCCTGGTGGCTAAAAGGCCGTCTGGAAAGAAACAATGTGAACTTCACCCAATAGAAAAGAAGCCAATTCCATTCGATGTGGTTCATGCTGATTTTATGGGACCATTTGACGAAAAAGACTATcgttatattttcattttgattgaTGCCTTTACAAAATTTGCAGTTTTATTCCCTTGTAAAACTCTTACAGCTGCGGAAACTGTTCAAATGTTTTATAACTATGTAATGCTATTTGGAGCTCCAGCCAAACTTGTAAGTGACCGAGGCACTAATTTTACTAGTGCTGAGTTTAAAAACTTCTGCATGTCGATGGGAATAACACATCATTTAATTGCTCCTGGTGCTAGTAGAGCTAATGGCCAAGTGGAACGTTATGTGGACACTGTTGCTAACTTATTGAGAACTAATTTAGATAAATGTGGCGAATGGACTGGTTATATCAGTCGTGTACAACTAGCTCTTAATACAACGGTTAATAAAACAACTGGATTTTCTCCGTTGAAAGTATTAACAGGTATATCGGGACGGACTCCAGATATTAGTGCATTTTTAGCAGAGCTCGAAATTGAGCCACAATTTGACGACGTAGAAGAAATCCGAAAGCTTGCCACTGAACGAGAAGAGTTAAATGCAACTCGAATGAAAATCAGATTTGATCAAAATAAATGCAAACCAACTCAATTAAAAATTGGACAAAAGGTTGTCTATTGTAGTAACCAGAGGCGCAAATCGAAGTTACAGCCGTATTATCGTGGTCCTTATGAAATAGTTGGTGTCCTTCCCAATGATCGATATAAGTTGAAGAAAGGAAACTGCAAAACTTTTACTGTTGCAGCAAGGGAGGTCATTCGGCCTTTAAATGAGAGTGAAGACGAGAAGGATGTTGAATACCATTTAGATCGTCATATCAGTAATTTTCATAAGAAAGCACCTCCTCACGTCTGTGATATTTGTGGTcgcacatataaaaataaaacctcaTTTAAACGTCATTATGATGAGCATCAAGGCATTGTTTCTAAAGCCGTACAGTGTTCGATTTGCAATACATGGCTAAAGAATGAAGATACGCTACGCTTGCATCGTTTCACTCATGAGGAACAAATAACGCCGTGCAACGTTTGTGGCAAAGTGTTCAAAACAAAACGTAGACTATATAGACACAAAGTATACTGGCATACATTGGACACCAATTTGCGTTGTAGCTTCTGCGATAAAGTGTTTCGCGAAAAGCGCAATCTTGAGGAGCACATGGCCATACATACTGGCGTCCAACTCTATACATGTCCCCATTGCGGCAAAGATTCACGTTCGaaatcaaatatgtatgtgcatattaaAAGAATACATCCAGATGAATGGTGGAAATCGAAAATGGAGCGTCTGAACTTGAAGCCCAAAACTTCAGTCAAGTCCGAGGACTattCATTCAAAAAACATTATGCCCAGCATCAAGGAATCATAGAACCAGCTGCACAGTGTTCCATATGCAATAAGTGGCTTAAAAACAAACACAGTTTACGTTTGCATCGTTTTGTTCACGAAAAAAATCCAACTCCTTGCGAAGTGTGCGGCAAGGTATTTGAGACTAAACATAGTCTGCGCAAACACAAATCCTACTGGCATAAGTCCGACTTAAATTTACAGTGtaacttttgtgaaaaaatgtttcGCCAAGAACGTAATCTGCAAGAACATATGGCTATACATACTGGCATGCAGCTCTATAAGTGTCCACATTGTCAGAAGGAGTCACGCTCAAAGtcaaatatgtatgttcatataaaGAGACAACATCCAACTGAGTGGTGGAAATCTAAAATGGAACGTTTAAATATAGACCCAAAGGCTGAGAATCCCGAATtcaatcaacaaaattaa
- Protein Sequence
- MRRFHEENCHVGWEKTLMKMREHFWMPHMTKNVRKFVNSCLICLVAKRPSGKKQCELHPIEKKPIPFDVVHADFMGPFDEKDYRYIFILIDAFTKFAVLFPCKTLTAAETVQMFYNYVMLFGAPAKLVSDRGTNFTSAEFKNFCMSMGITHHLIAPGASRANGQVERYVDTVANLLRTNLDKCGEWTGYISRVQLALNTTVNKTTGFSPLKVLTGISGRTPDISAFLAELEIEPQFDDVEEIRKLATEREELNATRMKIRFDQNKCKPTQLKIGQKVVYCSNQRRKSKLQPYYRGPYEIVGVLPNDRYKLKKGNCKTFTVAAREVIRPLNESEDEKDVEYHLDRHISNFHKKAPPHVCDICGRTYKNKTSFKRHYDEHQGIVSKAVQCSICNTWLKNEDTLRLHRFTHEEQITPCNVCGKVFKTKRRLYRHKVYWHTLDTNLRCSFCDKVFREKRNLEEHMAIHTGVQLYTCPHCGKDSRSKSNMYVHIKRIHPDEWWKSKMERLNLKPKTSVKSEDYSFKKHYAQHQGIIEPAAQCSICNKWLKNKHSLRLHRFVHEKNPTPCEVCGKVFETKHSLRKHKSYWHKSDLNLQCNFCEKMFRQERNLQEHMAIHTGMQLYKCPHCQKESRSKSNMYVHIKRQHPTEWWKSKMERLNIDPKAENPEFNQQN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -