Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999967.1:100355916-100357889[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 1 1.2e+02 4.8 0.2 2 23 278 300 277 300 0.88
2 9 0.00079 0.091 14.6 0.3 1 23 332 355 332 355 0.97
3 9 2.5e-05 0.0028 19.3 0.9 1 23 364 386 364 386 0.97
4 9 9.4e-05 0.011 17.5 0.1 1 23 394 417 394 417 0.94
5 9 0.00031 0.035 15.9 0.1 3 23 425 445 424 445 0.97
6 9 0.068 7.8 8.5 0.2 3 23 455 476 453 476 0.94
7 9 0.00038 0.044 15.6 1.9 1 23 484 507 484 507 0.96
8 9 4.5e-07 5.2e-05 24.8 1.1 1 23 513 535 513 535 0.98
9 9 4e-06 0.00046 21.8 1.3 1 23 541 564 541 564 0.98

Sequence Information

Coding Sequence
ATGGAGTCCTGTATATTGTGCTTGGAAATAAATAGGGATATATTAGACTGCATAAGAGCATGTTCAACACGATGGCAGGAGCTTGACATAACGAAAACCATAGAGAAACACTTTTGGCCATTGAACAACATTCAACCAAGTTCCTTTATATGCTTATCATGTTGGCAAGAAGTAGACGGTTTTCATAATTTCTTCTTACGCATAGAAGAGTCTCATcttaattttggaaaaataaaagtGGAGGACTTATCAGATCCGGTGGAATGTAAAGAAGAATTTACACAGATATCAATTGCTCAAGATGAAGAGGTAGAAttggataaaaataatatagcttTCTGCTTTTTAGAACCAGAAATACAATTTGATCAAGCTCAGCAGAGGGGTTTGACAGAACCAGAAATTCTTATAGACCAGTCGCCAATACTCAACTCGGTTGTTGATCAAAAAACTGTGATTGCTGAGCCGCTAGATGAAGTAGATTTAGAGGATTATGAGGTATGTAAGCGTATGAGTTTTAAAACTGGCCACAGAGGAAAAGACCCCCTGGAAAAATCcaagaacaaaaagaaaaaaaatcttaaaacaaaaatatatgatgAAAAATCACTAGCAGAGAATAACGCTGAAGATTATAAAGTTAAGATCGAGCCAGTAGATTTAAATAATGGCGATTCGGATGGTATAAGTGATAATGAGGATTATGTCTCTGATATTAAAGATCAATCATACAAAGACACTTCAGAAGTTAAAAGACGGAAAGCTTACAGCAAGCACCGCACAAATCGTAAAGAAAATGACAAATTTATAGCCGAGCACTTTAAGCAAATGTACTGTGATCTTTGTCAAGCGCCATTTGAAGACTTTCCTTCCATGCAGAAACACTTTACTGAAACTCACGAACAACGCGGTTACGTTCTTTGCTGCAAGAGAAAATTTTTCGATCGCACTCGTCTAGTTGACCATCTACACTGCCACTTAAATCCTGATCATTTTAAATGCAACGAATGTGGTAAAGCTATGTCCGATCGTATTAGTTTTGATAGTCATATGTTACGTGTACATAGAGCTAATGAAGTTGTTAAACAACATTCCTGTGATATATGTGGGAAATCCTTTACAGAGGCTTATGTTTTACGAATTCATAAATTAACCCATTTACCGgaagaggaaaaaaaattcccttGTGGTGATTGTGGTAAAAACTATGGCAGTCCATATCTACTTAATCAACATAGGCAAGCTGTACATCTTAAGcgatttgtcaaaatttgttacatttgcGGTAAAGCAATAAATTCAAGTGCGGAATTTAAGGTGCACATGAACAAGCACGAGGGTATTCCCCTACCCCTTGTTAATTGTGATGTTTGTGGGTTAAGGTTGACTAGTGAACGCGGCCTAAAGTTACATAAAGAATCTCAACACCCGATTGGAGGAAAACAAGAACATCACTGTCCTACATGTCCTAAAATATCACCAACTCTCAAGGCGCTTAAAAAGCATATAAATACTATGCACGAAAAGGGTTATGATCACAAATGCAGTATATGTGAAAAAGCGTTTAAGAGATCAGAGGCTTTGCggGAACATATGGCCACACACACTGGCACAACATTGTACACATGTCCTTGGTGCCCGAAAACCTTCAATTCTAATGGAAATATGCATGCTCACCGTAAAAAGATTCATCCTAAAGAGTGGGAAGAATCAAAATTGCAAAAGTATTCGGTTAATATACCGCCTGAAATTTAA
Protein Sequence
MESCILCLEINRDILDCIRACSTRWQELDITKTIEKHFWPLNNIQPSSFICLSCWQEVDGFHNFFLRIEESHLNFGKIKVEDLSDPVECKEEFTQISIAQDEEVELDKNNIAFCFLEPEIQFDQAQQRGLTEPEILIDQSPILNSVVDQKTVIAEPLDEVDLEDYEVCKRMSFKTGHRGKDPLEKSKNKKKKNLKTKIYDEKSLAENNAEDYKVKIEPVDLNNGDSDGISDNEDYVSDIKDQSYKDTSEVKRRKAYSKHRTNRKENDKFIAEHFKQMYCDLCQAPFEDFPSMQKHFTETHEQRGYVLCCKRKFFDRTRLVDHLHCHLNPDHFKCNECGKAMSDRISFDSHMLRVHRANEVVKQHSCDICGKSFTEAYVLRIHKLTHLPEEEKKFPCGDCGKNYGSPYLLNQHRQAVHLKRFVKICYICGKAINSSAEFKVHMNKHEGIPLPLVNCDVCGLRLTSERGLKLHKESQHPIGGKQEHHCPTCPKISPTLKALKKHINTMHEKGYDHKCSICEKAFKRSEALREHMATHTGTTLYTCPWCPKTFNSNGNMHAHRKKIHPKEWEESKLQKYSVNIPPEI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01398840;
90% Identity
iTF_01074759;
80% Identity
-