Tfer034475.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121760377-121769631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.5 6.4e+02 2.5 2.4 1 23 308 331 308 331 0.85 2 20 0.0021 0.25 13.2 2.1 1 23 381 404 381 404 0.97 3 20 0.099 11 8.0 2.3 1 23 410 433 410 433 0.97 4 20 0.27 32 6.6 4.4 2 23 464 485 464 485 0.96 5 20 0.00046 0.053 15.3 3.3 1 23 562 584 562 585 0.95 6 20 0.13 15 7.6 1.8 2 23 594 615 593 615 0.97 7 20 0.0054 0.62 12.0 0.4 2 23 675 696 674 696 0.96 8 20 0.0068 0.78 11.6 2.3 1 23 769 792 769 792 0.94 9 20 0.0053 0.61 12.0 0.3 1 22 799 820 799 820 0.96 10 20 0.0012 0.14 14.1 2.9 2 23 888 909 887 909 0.96 11 20 0.64 73 5.4 0.1 2 19 936 953 935 956 0.85 12 20 0.0015 0.18 13.7 7.7 1 23 1007 1030 1007 1030 0.98 13 20 0.027 3.2 9.7 1.9 1 23 1067 1090 1067 1090 0.96 14 20 0.36 41 6.2 0.7 1 23 1146 1167 1146 1167 0.96 15 20 0.00015 0.017 16.9 4.4 1 23 1173 1196 1173 1196 0.98 16 20 0.00036 0.041 15.7 3.0 1 23 1206 1228 1206 1228 0.98 17 20 8.4e-06 0.00097 20.8 0.2 3 23 1265 1285 1264 1285 0.99 18 20 0.00015 0.017 16.9 5.2 1 23 1291 1314 1291 1314 0.98 19 20 3.4e-05 0.004 18.9 0.3 2 23 1320 1341 1320 1341 0.97 20 20 0.19 22 7.1 2.9 2 22 1348 1368 1347 1371 0.89
Sequence Information
- Coding Sequence
- atggTCAAGAGTATGATGAACGAATGTTTTATTAATGGGGTGCTGTATAAATGTCGTACTTGCTTTGATCCTGCAACAACAGTATATGCTCTTTCAGAGGAGTGCAGCAACTCCAGAACTTGTCGAGATCTATTGAATGATATTGTTAAATCGAAGACAAACGATGACGAATTACTTCCAAAGACGATTTGTTCGAAATGCTTAGACAAACTTATCAGTTGCTACGATTTTATACTTCATATTAAAAATGTGAATGAAAAGTACCACCAACTTTTGGCAAATGGCAAGCATTCTTCAGAAAATGATAATCTTGCTAGCAGCTCTAAGAATGTTGCAAAATGCTTGGAAGAATCTGCCACTGCCTTGCCTTTGGATCCGTGTGTTTCTGAAATTAAGTGTGAAGACGAACACTTTATGTCTTACGATATTGTTTTAAATAGCTACGATGGAAGAAACGATTCGGGCAAAGaagCTACCACTGTGAGAACACAGGGTGAGGGTGATGACAGAGTGGCCGCTAGAAGCTATAATATAAGATGGTGCTACAATGCGCTACAAAGCACCGCCTGTGGTTTCTTATGTGATCGCTCAAAAGATGTCAGAGTGCGAGTGAAACTACATGCGAGTTTATGCTACAAAGGAGATATTTGTGATCCTTATATGGAAACTTTCAATGAGGATGTTAAGCCCTTCTCAGATAAGTTGCAAAGTCAAcaaagATCCCCAAGTGAAGAAACAAAACAAGTTCTTGGAGATAATCTTAACGATTACGATTCCGATTCCGAAAACAGCTGTACATCTACGGACGAAAGTGATTTTCCGattgaaaaaagaaagaagaaagatGTAATAAACAATACCAGTCAGCGAttcgaaaaacaaaataatgatgGAGACAAAACTGATGAACCGAAGAAAAGTTTTCTGTGCTACATATGCAAAAGATCGTTTCATGAACTAAGCAGACTTCGTTTTCACATACAAGATATGCACGAAAACAAAGCTAATAATCCAAGAACTAAACTTGGgtCCTCATCCTCCAGTGATAGTGAACATGACCTGCCCAATATTCAGACACTTGGAAAGAAATCTGAAGCAGAATTCTCCAAATACTTTCAAATCGAAAAAGTCGACGGTCATTACGTATGTGGGGTGTGCAAAAAATCATTTACTATGCAAAATTCTTGCCGCAGGCATATAATTACGATCCACAGCCAAGAAAAATCTTTCCCATGCGGATTTTGCGACCGAAGTGTGAGATGTAAGTCATACTTACTTTCACATCTAAAACGTATACATCCAGATCAGTCATATGAAtccaataaaatacaattaggACGTTTGTTTGGAGAACGTCTGTATAGCAAACCTCTTCTATTACCGCGAGCGGAATGTAAGCTGTGTTGTACTACTTTTACGACTAAAAAAACACTTCTTCAGCACTTGGATAGTCACAGTGAGGCCAGTACTCTTGATAGCTTAAAATTAAGCAGTGATATTATTCAGCGTTGGTTTCCAAATATGAAGGATTTGCAAGTCATAAAAACAATGATATGTAAAGATATTCGAGAAAAACACTGGCTCAaatattatacaattttaaatgacTTTTCCTATGAAATATCCATTAGTGATACGGATGCAGAAGTTTTGGAAGAAGAAACAGAAGTACCTGTCAGCAAATATAATTGCGAATTGTGTTCAAAAGATTTTCGGTACAAATATCAAGTGTTTGCTCATATGAGAGAGCATCATTTGAACAACGAAAAAATTCCTTTGAAATGTAGCCGTTGCAAATTGGAATTTATATCTACAAAAATGTATGAGCTACACAGACAAACTCACTGTCGAAGTGAACATAAACTACTGATTTGCTTTAATTGTCCTGGCAAGTTTCTCTGGgatgaaaatatgaaaacacACAATTGTGTTacgaaaacaataaattttgaaaaatctttaaattatgATGTAATTGAAAGTTACAATGAAGTAGTGCGTTCATCGCCAAAAACTATCATAAGATGTGCTCTTTGTGAAATGACATTCGAAAAGCTGCGGGACTTACGACAACACATGTCCTTGCACGCTGATGGTGATATTGGAATTGACTTTAatggttgtatgtatgtaaatcaatTTGAAACTTCCTCCAGCAATCGTTTATTGTTGCAACAGAAGATTAAAAATGCTTTCAAGAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGTATGGTAAAGAAATGGATATTTCAGATTCGGATACCGATGAAGATGTTGCTGATGgtgaaaaaagttatttgtgcGAACTGTGCTATGAAACGTTTAAAAAGCGAAAACTACTGTTTAATCATCAAAAGGAACAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGATTTGTTAGAACAACATATGAAAAGAGAGTGTTGGAATGAACATCGACGTGTGGGTGAAAAATGCGGTTGTTGTAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAGACATAAAGAAATacagCGATacatgaatattaaaaattcgCTGTCTACGAACTTGTGTCGTACCCAGGCAGAGAAAACGATGGCTTCATTAAACTCAAGTGACTATATCCAAATTTGCTATTGTTTCTTATGTCCTAAACATTTCCCTAATGCTGATCTTTTAAAAGATCATTTGATGCGCCATCGGTTAACAGCATCCATTATCAAAACTGTTGCTAGCACAATACATTCTACATGGTGGCCAAATGGCTTAAAgacaataaaatgcaaaatatgtgaTGAAGTATTTTTAAGTATGGCCAAACTTAATGAACATTTTTCTTCCAAAGAATCCAAAAAACTCTGTGGTGCCAAGCAGCAATCTCTAGCAAATTACTCGATTACTAATCACTTGGGGTTTGAATTACATTTAGAGCTAGACTCGGAAACAGAAACTGAATGCTTTGaatatgaagaaaataaaagcaaGTTGACATATACATGTTGCTTGTGTCATAAATCATTTAaacgaaaatatgaaatatcTCAACATCAAAGATCCATGCACAATTATGAAATGTTGGAACTGAAATGTGAacgttgtttttttaaaactgtATCACagAAAGTTTTAGATTATCACAGAAGGAGCCAGTGCTTTAACGTTGAGAAGAAACACCAATGCGATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTTGAAAAGCATATTTCCATATTTCATACTTCGAACGTTTTCTTCAAAGTATTGAATTCGGATAGCGCAACGAATTTGAATGACGGAAGTAATATTAATTCTCAATGCCTTGAATCAGAGGAAGCTTTCCAGCATGATTTGTCATCAGCATTAAATCAAGATGCAGGGAAGTGCATTCAATCTAAACATAAATTCCAATGTCTCATTTGTGGAATTTACATTTCCAAAAAGAGTTATTCAGAACATATAAGGAAACACAAATGTGGCAAAtcttacaaatgcaattattgCGAAATGGCTTTTGTAACATTTTCCTCTTTAAAGAATCATAAACGGATGTGCCATAAGCTTTTGCTCACCGACGAAACACCATACAGATGCACACTTTGCTCGAAATTGTTTAGACTAGCGTCACATCTGGCTTCTCATATGAGATTTCATACAGATGTAAATTCACAACGACAAAACAATTTATTGCCGACGCCAGACAAGAAATCGGACTCGAAAGTTTCTATTCAGCATACACTAGGAgaaggaaagaaaaaattatgtcCAATATGTGgtgtctatttttcatacaaaacaaaTCTTAAAATACATATTAGAAGCCATAAGGGTGAGAGGACATTCAAGTGCGATCTTTGTGATAAGGCCTGTAATACTCGAGCCCATTTAAATCAACATCGACGCAGCACTCACTTTACTGAAATTCCCAAATGTTCAATTTGCGGGAAAACGTTTCCCATAAGATCCAAATTGGAAACTCACATGGTCGTTCACATGAAGGAGAAACCATCTACATGTGAGGTTTGTAATCGAGCTTTTAAATGTGAATCATATCTCAAACAGCATCGTACCAAAACTGGGCATCATACAGAAAATAATTGA
- Protein Sequence
- MVKSMMNECFINGVLYKCRTCFDPATTVYALSEECSNSRTCRDLLNDIVKSKTNDDELLPKTICSKCLDKLISCYDFILHIKNVNEKYHQLLANGKHSSENDNLASSSKNVAKCLEESATALPLDPCVSEIKCEDEHFMSYDIVLNSYDGRNDSGKEATTVRTQGEGDDRVAARSYNIRWCYNALQSTACGFLCDRSKDVRVRVKLHASLCYKGDICDPYMETFNEDVKPFSDKLQSQQRSPSEETKQVLGDNLNDYDSDSENSCTSTDESDFPIEKRKKKDVINNTSQRFEKQNNDGDKTDEPKKSFLCYICKRSFHELSRLRFHIQDMHENKANNPRTKLGSSSSSDSEHDLPNIQTLGKKSEAEFSKYFQIEKVDGHYVCGVCKKSFTMQNSCRRHIITIHSQEKSFPCGFCDRSVRCKSYLLSHLKRIHPDQSYESNKIQLGRLFGERLYSKPLLLPRAECKLCCTTFTTKKTLLQHLDSHSEASTLDSLKLSSDIIQRWFPNMKDLQVIKTMICKDIREKHWLKYYTILNDFSYEISISDTDAEVLEEETEVPVSKYNCELCSKDFRYKYQVFAHMREHHLNNEKIPLKCSRCKLEFISTKMYELHRQTHCRSEHKLLICFNCPGKFLWDENMKTHNCVTKTINFEKSLNYDVIESYNEVVRSSPKTIIRCALCEMTFEKLRDLRQHMSLHADGDIGIDFNGCMYVNQFETSSSNRLLLQQKIKNAFKKRQISQLYQAIDKYGKEMDISDSDTDEDVADGEKSYLCELCYETFKKRKLLFNHQKEQHKDVSMPFTCKECKMQYVSIDLLEQHMKRECWNEHRRVGEKCGCCKERFIWPENMLRHKEIQRYMNIKNSLSTNLCRTQAEKTMASLNSSDYIQICYCFLCPKHFPNADLLKDHLMRHRLTASIIKTVASTIHSTWWPNGLKTIKCKICDEVFLSMAKLNEHFSSKESKKLCGAKQQSLANYSITNHLGFELHLELDSETETECFEYEENKSKLTYTCCLCHKSFKRKYEISQHQRSMHNYEMLELKCERCFFKTVSQKVLDYHRRSQCFNVEKKHQCDQCNFKFMWQENLEKHISIFHTSNVFFKVLNSDSATNLNDGSNINSQCLESEEAFQHDLSSALNQDAGKCIQSKHKFQCLICGIYISKKSYSEHIRKHKCGKSYKCNYCEMAFVTFSSLKNHKRMCHKLLLTDETPYRCTLCSKLFRLASHLASHMRFHTDVNSQRQNNLLPTPDKKSDSKVSIQHTLGEGKKKLCPICGVYFSYKTNLKIHIRSHKGERTFKCDLCDKACNTRAHLNQHRRSTHFTEIPKCSICGKTFPIRSKLETHMVVHMKEKPSTCEVCNRAFKCESYLKQHRTKTGHHTENN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -