Tfer034478.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121802991-121816369[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0075 0.87 11.5 1.1 1 23 242 265 242 265 0.97 2 15 0.015 1.7 10.6 0.1 2 20 302 320 301 323 0.94 3 15 0.0028 0.32 12.9 2.1 1 23 396 419 396 419 0.94 4 15 0.0089 1 11.3 0.4 1 22 426 447 426 447 0.95 5 15 0.00017 0.019 16.7 1.6 2 23 502 523 501 523 0.96 6 15 0.84 97 5.1 0.1 2 19 550 567 549 569 0.81 7 15 0.00064 0.074 14.9 6.6 1 23 616 639 616 639 0.98 8 15 0.11 12 7.9 4.1 1 23 676 699 676 699 0.96 9 15 0.031 3.6 9.6 0.8 1 23 771 794 771 794 0.97 10 15 2.3e-07 2.6e-05 25.7 1.6 1 23 804 826 804 826 0.99 11 15 0.16 18 7.3 0.6 5 23 847 865 846 865 0.93 12 15 1.5e-05 0.0018 20.0 1.9 1 23 871 893 871 893 0.99 13 15 0.00012 0.014 17.1 4.4 1 23 899 921 899 921 0.99 14 15 0.00024 0.028 16.2 1.1 1 23 927 949 927 949 0.94 15 15 6.1e-05 0.007 18.1 0.9 1 22 955 976 955 979 0.90
Sequence Information
- Coding Sequence
- ATGACGAATAAATGCTTTATAAATGGAGTGCAGTATACATGTCGCACTTGCTTCGATCCTGCAGCAACAGTATATCCTCTTGCTGAGGTGTGCAGCAACTCGAAAACTTGGAGAGATttgctgatcgatattgttcaATTAAAGATAAACGATGACGAGTTACTTCCAAAGACCATTTGTTCGAAATGTTTGGAAAAGCTTATCAGCTACTATGACTTTATACTTTATGTTCAAAATGTGAATGAAAAGTACCACCAACTCTTGAAAAATTCCGAAAATTTGTCTCAAAATGATGCTATTGCCAGCAGCTCTAGTAATATTACAGAATGCTTGATAGAATCTGCAACTGATTTGCCTATGGATCAGTATGTTTCGAAAATTAAGGTTGAAGAAGAGTTCCTCATGTCTTATGATGTTGTCTTAAATAGTGACGATAGAAGAAACGATTCTGTCAAAGAAGAagATACTTTTGATCCTTATGTGGAATATTTGAAGGAGGATACTGAGCCCTTTTCAGATAACTTGCAATACCAACAaagatcccCAAATGAAGAAATAAATGAACTTCGTGGAGATGATAACGATTATGATTCCGAAAACagTTCTACATCTACGGCGGACGAAAGCGATCATATGTCTGAAAAAGGAAAGAAGGAAGATGAAATGAACGGTGATACGGATGCCGAAGATTTGGAAGAAGAAACAGAAGTGCCTGTCAACAAATATAAATGCGAATTGTGTTCGAAAgattttttgtacaaatatcAAGTGTTTGCTCATATGAGAGAGGATCATTTGAACGAAGACATTTCTTTGAAATGTAGCCGTTGCAAGTTGGAATTTATATCTACAAAAATTGAAAGTTTCAAAGAAGTAATTCGTTCGTCGCCAAAAACTATCATAAGATGTGGTCTTTGTGATatggcatttgaaaaattgcgTGATTTACGACAACACATGCCTTTGCACGCCGATGGCAAAACCGGAGTTGTCTTTGATggttgtttttatgtaaatcaGCTTGAAAATTTATCCAGGAATCGCGAATTATTGCAACAAAAGATTAAAAATGCATTTGTGAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGCACGGCAAAGAAATGGATATTTCAGATTCGGATAGCGATGAAgatgatgctgatgatgaaaaaaactatttgtgcGAAGTCTGCtttgaaacttttaaaaagCGAAAACTGCTGTTTAATCATCAAAAGGAACAACACAAGGATGTTTCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAATACGTTAGTATTGACTTGTTGCAACAACATTTAAAGAGGGAATGTTGGAATGAACATCGACGAGCAGCTGAACAATGCGATTGTTGCAAAGAGCGTTTTATATGGCCGGAAAACATGTTGAAACATAAAGAAATACAGcgaTACATACGTATCAAAAACTCTTTGTCAGAGAAGTTGTGTCGTGACAATATCCAAATTTGCTATTGTTTCTTATGTCCTAAAAATTTCTCTAATGCTGATCTTTTAAATGATCATTTGATGCGCCATCGCTTAACACCATCCACCATCAAAACTGTTGCAAGCACAATACATTCTATATGGTGGCCAAATGGTAAAAAGatcataaaatgcaaaatatgtgaCCGAGAATTTTTAAGTATGGCCGGATTAAATGAACACTTCTCTCTAAAAAATCCTGAAAACTTGTGTGGTGTCAAGCAACATTATCTGGAAAATTACTCGATTACTAACCAAATGGggtttgaattaaatttagagCTGGATTCAGAAACAGAAACtgaagaaaatgaaaatatattgccATATACATGTTGCATGTGTAGTAAATCATTTAAGCGAAAGTTTCAAATAACTCAACATCAAAGATCTATGCACAATTATGAAATGTTGGAACTGAAATGTGAACGTTGTGTTTTTAGAACTGTATCACAGAAAGTTTTAGATTATCATAGATTGAGTCAGTGTTTCGATGTTGAGAAAAAATATCACTGCCATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTTGAAAATCATATTTCGATATTCCATAAGTCAAacgatttcttaaaaatattggaTGTAGCTGACACGACGCTTACAAATGCTCAATGCCTTGAATCAAAAGAAGCTTCACGGAATGATATGCCATTAGCATTACATCAAACCCATTCAGAAGATGAGTTTCAATGTATAATTTGTGGAAATTACATTATCAAAAATGATTATTCAGAACATATTAGGAGACACAAAAATGGCAAATCTTACAATTGCAGTCTTTGCGAAATGGTTTTCTTAAAGCAATTCGCTTTAGTTAAGCATAGGAGAATGAGCCATAAGATTGTATGCTCCGACGAACGAAAATACAGATGCACAATTTGTTCGAAATCTTATAGTAGATCGGTAAATCTGTCCGTTCATATGCGACGTCATGCAGATCcagaagaaaaaaagcaaaaaaatgtattgaatcCAGTCAAGAAAAAGTTGAAAGTATGTCCATTTTGTGGTGTCCATAGAGCAAATCTTGAAACACATATTAAAAGCCACACGGAGGAGACGCCCTTCAAGTGCGATCTATGTAGTAAAATCTTTAGCAGCGAATCTAAGTTATATGTGCATCGGCGCACTCATTTTAATAAACGTTCTTTTAAATGTAAACTTTGCGAGAAAGCCTATGTCCATAAATTCCAATTTAAAGCTCACTTGCGTTCTCACACTGGCGAGCGTCCATATCAGTGCTTTGTTTGTCAGAAAAAATTTATCAGTTCGCGCAATTTGCAGTTGCATTCGGTTATTCATACTAGTGATAAATCCTTTGTATGTGAGATTTGCAATAAAGCATTTCATCGTGCTTCGTATCTCAAGCTGCATCGTATCAGAATGGGTCATCATACAGAAAATAATTGA
- Protein Sequence
- MTNKCFINGVQYTCRTCFDPAATVYPLAEVCSNSKTWRDLLIDIVQLKINDDELLPKTICSKCLEKLISYYDFILYVQNVNEKYHQLLKNSENLSQNDAIASSSSNITECLIESATDLPMDQYVSKIKVEEEFLMSYDVVLNSDDRRNDSVKEEDTFDPYVEYLKEDTEPFSDNLQYQQRSPNEEINELRGDDNDYDSENSSTSTADESDHMSEKGKKEDEMNGDTDAEDLEEETEVPVNKYKCELCSKDFLYKYQVFAHMREDHLNEDISLKCSRCKLEFISTKIESFKEVIRSSPKTIIRCGLCDMAFEKLRDLRQHMPLHADGKTGVVFDGCFYVNQLENLSRNRELLQQKIKNAFVKRQISQLYQAIDKHGKEMDISDSDSDEDDADDEKNYLCEVCFETFKKRKLLFNHQKEQHKDVSMPFTCKECKMQYVSIDLLQQHLKRECWNEHRRAAEQCDCCKERFIWPENMLKHKEIQRYIRIKNSLSEKLCRDNIQICYCFLCPKNFSNADLLNDHLMRHRLTPSTIKTVASTIHSIWWPNGKKIIKCKICDREFLSMAGLNEHFSLKNPENLCGVKQHYLENYSITNQMGFELNLELDSETETEENENILPYTCCMCSKSFKRKFQITQHQRSMHNYEMLELKCERCVFRTVSQKVLDYHRLSQCFDVEKKYHCHQCNFKFMWQENLENHISIFHKSNDFLKILDVADTTLTNAQCLESKEASRNDMPLALHQTHSEDEFQCIICGNYIIKNDYSEHIRRHKNGKSYNCSLCEMVFLKQFALVKHRRMSHKIVCSDERKYRCTICSKSYSRSVNLSVHMRRHADPEEKKQKNVLNPVKKKLKVCPFCGVHRANLETHIKSHTEETPFKCDLCSKIFSSESKLYVHRRTHFNKRSFKCKLCEKAYVHKFQFKAHLRSHTGERPYQCFVCQKKFISSRNLQLHSVIHTSDKSFVCEICNKAFHRASYLKLHRIRMGHHTENN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01398890; iTF_01397883;
- 90% Identity
- -
- 80% Identity
- -