Basic Information

Insect: Tachina fera
Gene Symbol: -
Assembly: GCA_905220375.1
Location: LR999966.1:80750973-80755100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.5 6.4e+02 2.5 0.4 2 23 205 227 204 227 0.89

2 11 0.089 10 8.1 0.4 6 23 236 253 236 253 0.98

3 11 0.00012 0.014 17.1 3.2 2 23 260 282 259 282 0.96

4 11 1.1e-06 0.00012 23.6 1.2 1 23 288 310 288 310 0.99

5 11 0.0055 0.63 12.0 0.1 1 23 317 340 317 340 0.97

6 11 0.023 2.7 10.0 0.7 2 23 344 365 344 365 0.95

7 11 0.0007 0.081 14.8 0.5 1 22 373 394 373 396 0.90

8 11 0.82 94 5.1 0.6 1 23 408 431 408 431 0.88

9 11 0.00055 0.063 15.1 0.0 1 23 438 461 438 461 0.97

10 11 3.7e-06 0.00043 21.9 3.6 1 23 467 489 467 489 0.98

11 11 1.5e-05 0.0017 20.1 3.0 1 23 495 518 495 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.5	6.4e+02	2.5	0.4	2	23	205	227	204	227	0.89
2	11	0.089	10	8.1	0.4	6	23	236	253	236	253	0.98
3	11	0.00012	0.014	17.1	3.2	2	23	260	282	259	282	0.96
4	11	1.1e-06	0.00012	23.6	1.2	1	23	288	310	288	310	0.99
5	11	0.0055	0.63	12.0	0.1	1	23	317	340	317	340	0.97
6	11	0.023	2.7	10.0	0.7	2	23	344	365	344	365	0.95
7	11	0.0007	0.081	14.8	0.5	1	22	373	394	373	396	0.90
8	11	0.82	94	5.1	0.6	1	23	408	431	408	431	0.88
9	11	0.00055	0.063	15.1	0.0	1	23	438	461	438	461	0.97
10	11	3.7e-06	0.00043	21.9	3.6	1	23	467	489	467	489	0.98
11	11	1.5e-05	0.0017	20.1	3.0	1	23	495	518	495	518	0.98

Sequence Information

Coding Sequence: atgtcaACAAAACAATGTTGTAGTTTGTGCTGCACTCCATGCGATGATTATAAATTACTAAAAGATGAATGGGGAGAAAGCAATGAATTCTACGAAACTACAGTTAAATATTTTGATCCCATGTTGCTCACAGATGAAGGAAACTCGAATCTTCACCATATTCAGGTTCTTTGTCAAGGCTGTTGGTATCACATAAACGAGTTTCATGAATTTCAGCAAATGGTGTTAAAAACTAGAATGCTTTGGGAACATAAACAGAAAATCGAAACGTTGcctattgaaataaaactagAAGATTGTGAAAATTTGGATCCAAATACACACTATAATCAAAGTTTTGATGAAAGTAAGGATGAAGACAATCGACTTGATTATTTCGAAAACAAAAGTTTGAAAACAGAATCAATGACAAAGTTAGAAGATACTACAAAATCGATAGATAACCAAGCCAATGGAAAAGAAAACGAACCGAAGAAGAGCAAACTATCACAAGAGATTGACAAAACCAAGGATCAAAatgaattattatataaaactaGACGTgacagaaaaccaaaaaaaagaaatactagAGTTTCGGATGCTTTTATAGCTGAATGGAAACCTGACTTAGTATGTGATATATGCAGTGACACCGCtaataattttgataaattacGCAGTCACTTCAATGAGAAACATAAAATaaggttttatataaaatgttgcgaaaaaaaattcttccaaCGAAATTTACTGGTGAACCACATTCAATTACACCTTAATCCAGAAATTAACAAATGTGATCTATGCGGAAAGTGTAGTACAACTAAAGACAGGCTCAGACAACATATGAAAGAAGTGCACGACGGcacaaaacaatttaaatgtgACATATGTGAAAAGCTTTTCAAACGCAAAGGAACATTGGAACGACATTTGCTCACACACACTACGGGAAGTAAGGATTTCATTTGCTCTGAGTGTGGTAACGGATATGTTGATGAACAATTGCTTAAATATCATGTAAAACGTATACATGGTGCTCGCGTTTGCGACCAGTGTGGTAAAACTATTCATGGATTGCGAGCTCTAAAGAAACATCTCATGGATCATGCAGGCATTGAGCGCCTTAAATTCCCTTGTGATGTTTGTGGTCTTGAACTGTCGTCAAGAAGTACCCTTAAACGTCATAAGGCTTTCAAGCACAACGATGGTACATTTAGCACTGAGCGCGATAAATTCTGTTGTGATGTTTGTGGTCTTGAACTGATGTCAACAAGTGGCGTTAAACGTCACAAGGCTGCCTACCACAACGATGGTACAACTATATATGTTTGCGGTATTTGCGGTAAAGTTGCTGCAAGTGAACACGCCTTATCGGTACACAAAAGAGTAGTACATGTAGGAGAACGTAAACATAAATGCACACACTGCGAAAAGGCTTTTAAATCTCCTAAATCGTTGCGTGAACATATTGCAACTCATACGGGAAAAGATCTGTATCAGTGTCCACATTGTCCTCGAACATTTAAAGCTAGTTCTAATATGTATAATCATCGGAAAAAAGTCCATTCAATGGAATATGAGGAAGCTCAAAAAAATCGATTGcatcatcaaaaaattaatagtaatcaaattaaaaaattagttgtaatataa
Protein Sequence: MSTKQCCSLCCTPCDDYKLLKDEWGESNEFYETTVKYFDPMLLTDEGNSNLHHIQVLCQGCWYHINEFHEFQQMVLKTRMLWEHKQKIETLPIEIKLEDCENLDPNTHYNQSFDESKDEDNRLDYFENKSLKTESMTKLEDTTKSIDNQANGKENEPKKSKLSQEIDKTKDQNELLYKTRRDRKPKKRNTRVSDAFIAEWKPDLVCDICSDTANNFDKLRSHFNEKHKIRFYIKCCEKKFFQRNLLVNHIQLHLNPEINKCDLCGKCSTTKDRLRQHMKEVHDGTKQFKCDICEKLFKRKGTLERHLLTHTTGSKDFICSECGNGYVDEQLLKYHVKRIHGARVCDQCGKTIHGLRALKKHLMDHAGIERLKFPCDVCGLELSSRSTLKRHKAFKHNDGTFSTERDKFCCDVCGLELMSTSGVKRHKAAYHNDGTTIYVCGICGKVAASEHALSVHKRVVHVGERKHKCTHCEKAFKSPKSLREHIATHTGKDLYQCPHCPRTFKASSNMYNHRKKVHSMEYEEAQKNRLHHQKINSNQIKKLVVI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01397829;
90% Identity: iTF_01397829;
80% Identity: -