Tfer039998.2
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- ZNF711
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:82880991-82891511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00042 0.048 15.5 5.7 3 23 26 47 24 47 0.95 2 11 0.022 2.6 10.0 1.8 2 23 59 81 59 81 0.96 3 11 0.00013 0.015 17.0 1.2 1 23 88 111 88 111 0.95 4 11 2.7e-06 0.00031 22.4 1.3 1 23 117 139 117 139 0.98 5 11 8e-06 0.00092 20.9 5.3 1 23 145 168 145 168 0.98 6 11 3.8 4.3e+02 3.0 0.3 8 23 182 197 181 197 0.92 7 11 0.0014 0.16 13.8 1.5 3 19 205 221 203 226 0.88 8 11 0.15 17 7.4 1.6 2 23 238 260 237 260 0.96 9 11 0.00012 0.014 17.1 1.2 1 23 267 290 267 290 0.94 10 11 9.4e-06 0.0011 20.7 1.2 1 23 296 318 296 318 0.98 11 11 8e-06 0.00092 20.9 5.3 1 23 324 347 324 347 0.98
Sequence Information
- Coding Sequence
- ATGTATTTTAGATTTCCAACAGCGAAACGTTTAAGTATCCATGAAAAAACACATAGTCAACATAATATGATGATTTGCGATAAATGCGGTAAAACGTTTAGGGACAAATGCCGCTTAAAATTACACCACAGATATGATCATTCAAATGAACCTAAACCCCAAAAAATACCAGAACAGTGTCCGTTTTGTAACAAATGGTATTCGTCTAAATCAAGCGTACACGAACACGTTCGTAATATGCATACAAACAACGATATTGAACATCGTTGTCCCAGATGCGGTTTCGTATCGACCACAGCAAAAGCTCTAAAGAAGCACATTCTTTATAATCATGATGTTGTGCGTAGACATAAATGTAATTTGTGTGATAAGGCTTTTAAGAGGCCACAGGATATAAAGGAACATATGGCCACCCATACGGGCGAACCGTTGTATACTTGTGTAAATTGTGGCAAAACCTTTAAATCTAAAGCGAATATGTTTCACCACCGCAGACGGTTTCATAGAGCCGAATGGATAGCCGATCGCACTAAACCGCCTAAAGAAAAatttcCAACTAATAAACGTTTGAGTGAGCATACAAATACGCATAATCCGCAGAATATAGTAATATGCGATAAATGTGGCAAAACATTGAGAAGTAAAGTGCATTTAAAACTTCATGATCGCAATAATCATTCTGAAGAACCGAAACCTGTAAAAATGCCACAACAATGTCCATTTTGTAAAAAGTGGTACTCCTCGAAATGGAGTGTGCACGAACATGTACGAAATATGCATACGAACAATGATATTGAACATCGTTGTCCCACTTGCGGTTTCGTATCGACAACAGCAAAGGCTCTTAAGAAGCATATACTCTTTAATCATGATGTAGTTCGCAGACATAAATGTAATTTATGTGAAAAGGCCTTCAAGAGGCCACAGGATATAAAGgaACATATGGCCACACATACCGGCGAACCATTGTACACATGTGTAAATTGCGGCAAAACCTTTAAATCTAAAGCGAATATGTTTCATCATCGTAGGCGGTTTCATAGAGCCGAATGGATAGCCGATCGCACTAAACCGCCTAAAGAAAAATATTcgagaaattaa
- Protein Sequence
- MYFRFPTAKRLSIHEKTHSQHNMMICDKCGKTFRDKCRLKLHHRYDHSNEPKPQKIPEQCPFCNKWYSSKSSVHEHVRNMHTNNDIEHRCPRCGFVSTTAKALKKHILYNHDVVRRHKCNLCDKAFKRPQDIKEHMATHTGEPLYTCVNCGKTFKSKANMFHHRRRFHRAEWIADRTKPPKEKFPTNKRLSEHTNTHNPQNIVICDKCGKTLRSKVHLKLHDRNNHSEEPKPVKMPQQCPFCKKWYSSKWSVHEHVRNMHTNNDIEHRCPTCGFVSTTAKALKKHILFNHDVVRRHKCNLCEKAFKRPQDIKEHMATHTGEPLYTCVNCGKTFKSKANMFHHRRRFHRAEWIADRTKPPKEKYSRN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00435829;
- 90% Identity
- iTF_01074741;
- 80% Identity
- -