Tfer040861.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- PRDM5
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:101119574-101122253[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.51 58 5.8 0.1 6 23 286 303 286 303 0.98 2 9 3.3e-06 0.00038 22.1 2.1 1 23 309 332 309 332 0.98 3 9 0.00047 0.054 15.3 0.2 2 23 338 358 337 358 0.95 4 9 1e-05 0.0012 20.5 0.2 2 23 367 389 366 389 0.95 5 9 0.25 28 6.8 0.5 3 23 397 416 395 416 0.92 6 9 0.00082 0.094 14.6 2.3 2 23 425 447 424 447 0.96 7 9 2.6e-07 2.9e-05 25.6 2.1 1 23 456 479 456 479 0.98 8 9 2e-05 0.0023 19.6 0.4 2 23 486 507 486 507 0.98 9 9 0.00033 0.038 15.8 0.4 3 23 515 536 514 536 0.97
Sequence Information
- Coding Sequence
- ATGAATTGCCTTCTGTGTTTGGAAACAATTGGAATCAATCAAAATTCGATAATATTTAATTCTAGCGAATGGCAGGAACTAAACATACAATATATCATTGAAAAGCATCTTTGGAAAATGGAAGTTTTAGATATTCAATCCTGCGTATGTCAAGCGTGTTGGCAAGAATTAAACAATTTCCACAAGTTTTACTCAAAAGTAGAAAGAggtcatacaaatttaaatgcaACATTGAATACACAACAAGTTTCCAAAgaagttaataataaaaaggaaTTGAAACTTGAACCtgaaattttattcttaaaagaGGAAAATGTGatagaaatttttgaaaaggaAGATGAAgaagtaaatagtcttaaaagAAGTACTAAACGCAAATGCGCTAGAAAGAAAAGTGTAGCAAAAAATAGTCCTGGGAAAAAATCCAACAAAGATAAAACTaataatgaaacaaataaactaaaatcCGAAGAGAAACACGGTGATATTGACACCAAATTACAATTAGAATGGATTGAAAATGGCGCTACGGAAAGCGTAATAAAATCCGATAAAAATGCAGATGAAATTGAATCAAAATTAGAGTTAATACCAATGGAAAATGACACGAAAGAAAACGAAGTGGAAGAAAATCTTGATGATCAGAAGCATAGCTTTGAAAGCGATGATGACCCTTCCACCCACGCGGTTGATTCATATACATCGGATCAATTGCCGGATGAGGATGACAAATTCatagccgaaaattttcaaattacctGTACCATTTGCCAAAACCCATTGGCTACATATGCCATAATGCTCAAGCATTACAGAGACGAACACAAACAACGTGGATATGCTTCATGTTGCAGCAGAAAATTTTATCCTCGTGTTGAATTAATCGATCATATTAAGCTTCACCAAAATCCCgaatattttaaatgcaaatactGCGATAAAATATTAACTAGGCGCGCGAACCTAAAGTACCACATAAAAAAAGTTCACgaacaaaataatatagaatGTGAAATTTGTGGTAAAATGTTAGTAAAATCAAGTCTAAAAAGGCATATGACATTACATGAAACCGATGATGATAAGAAGCTACCCTGCAAACAATGCGGTAAAAACTTCTTCTCTAAACCCGCCTTACAAAAACACATACAAGTTGTTCACCAAAAAAGGAATTATCAAATTTGCGACTTATGTGGCAAATCTATACCGAAAAATAGCTTCAAACGTCATACGTTGGAGCATGAAGGAAAACCTCCACCAACTGTAAGTTGTGAAATTTGCGGTCGTCACTTATCCGATATGCCTTGTTTAAAGCGACACATGAGATTGAATCATCCACCGAAAGGAGTTGCatctgaatttaaatgtactgaatgCCAGAAAGTGTATAAAAGCAATTACAGCCTTAAAAGTCACATAAGAACAGTACACGAAAGTAAATACGCCAGAAAGTGTACATTGTGTGGGAAAACTTTTAAAGGACCCGCCCCTCTAaagGAGCATATGTCTAGGCATGTTGGTCAACCCTTACGCGCTTGCAGCTTTTGTCCTAaagtattttattcaaatgGCAACATGTATGCACATCGCAAAAGAGAGCATCCAATAGAATGGGAGAAATCTATTAGAGaaaaatattatggaaatttaCCAGAAAAAGATGACACAAATACAAAGAAAGATAaataa
- Protein Sequence
- MNCLLCLETIGINQNSIIFNSSEWQELNIQYIIEKHLWKMEVLDIQSCVCQACWQELNNFHKFYSKVERGHTNLNATLNTQQVSKEVNNKKELKLEPEILFLKEENVIEIFEKEDEEVNSLKRSTKRKCARKKSVAKNSPGKKSNKDKTNNETNKLKSEEKHGDIDTKLQLEWIENGATESVIKSDKNADEIESKLELIPMENDTKENEVEENLDDQKHSFESDDDPSTHAVDSYTSDQLPDEDDKFIAENFQITCTICQNPLATYAIMLKHYRDEHKQRGYASCCSRKFYPRVELIDHIKLHQNPEYFKCKYCDKILTRRANLKYHIKKVHEQNNIECEICGKMLVKSSLKRHMTLHETDDDKKLPCKQCGKNFFSKPALQKHIQVVHQKRNYQICDLCGKSIPKNSFKRHTLEHEGKPPPTVSCEICGRHLSDMPCLKRHMRLNHPPKGVASEFKCTECQKVYKSNYSLKSHIRTVHESKYARKCTLCGKTFKGPAPLKEHMSRHVGQPLRACSFCPKVFYSNGNMYAHRKREHPIEWEKSIREKYYGNLPEKDDTNTKKDK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074752;
- 90% Identity
- -
- 80% Identity
- -