Basic Information

Insect: Tachina fera
Gene Symbol: X-element\ORF2
Assembly: GCA_905220375.1
Location: LR999966.1:13461717-13470086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0016 0.19 13.6 1.7 1 23 587 609 587 609 0.98

2 8 1.4e-05 0.0016 20.1 0.6 1 23 619 641 619 641 0.98

3 8 1.3e-05 0.0015 20.2 1.5 1 23 647 669 647 669 0.93

4 8 1.7e-05 0.002 19.8 0.1 1 23 675 697 675 697 0.95

5 8 7.6e-05 0.0087 17.8 1.0 1 23 704 726 704 726 0.96

6 8 1.5e-07 1.8e-05 26.3 1.1 1 23 732 754 732 754 0.98

7 8 4.1e-06 0.00048 21.8 3.5 1 23 760 782 760 782 0.99

8 8 0.11 13 7.8 0.3 1 23 788 810 788 810 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0016	0.19	13.6	1.7	1	23	587	609	587	609	0.98
2	8	1.4e-05	0.0016	20.1	0.6	1	23	619	641	619	641	0.98
3	8	1.3e-05	0.0015	20.2	1.5	1	23	647	669	647	669	0.93
4	8	1.7e-05	0.002	19.8	0.1	1	23	675	697	675	697	0.95
5	8	7.6e-05	0.0087	17.8	1.0	1	23	704	726	704	726	0.96
6	8	1.5e-07	1.8e-05	26.3	1.1	1	23	732	754	732	754	0.98
7	8	4.1e-06	0.00048	21.8	3.5	1	23	760	782	760	782	0.99
8	8	0.11	13	7.8	0.3	1	23	788	810	788	810	0.95

Sequence Information

Coding Sequence: atgagTTCTAATGATAACTTAGGTCCAATAGTATGCAATAATTCGTATCTTGAGTCTCAATTGCGGCAGTATAATGGTAAACTTAATGTGGGCCATATGAATATTCAAAGTTTCAAAATTGGAAATTCCAGTACTAAGCTGGATGAATTAACGGGTGTATTGGGCAATGGCTTGTTTGGAGTGTTGGGAATTACTGAAACTTGGCTAAAAGATGGTATTTCCTCAAGTGCGGTATCTTTTCCTGGTTATGTTTTGTGCCTAATCGACGTGGTGGTGGTGTTGCTTTTTTTGTTGCTAAAGGGATTAAGTTTAAGGATGAATTTATCATGTCATCATAACTCGTTGCCTACTCACCTATGTGTGAATTCTGGCAGTACATCGTTGATTGACTATTTTCTACTCTCTTCGTCATTGTTAGTCAGCCTGTCGGGGCAAATACAGATCCCTGGTATTTCCCGTCATGCCTTTATTTACTTATCTCTTGATTTTAATATTAGCAGCCCTATTGAATATgtagaattttttgattataataatGTAGATATGTCCTTATTGATGGAAACATTTTCCAGGTGCAATTGTGATTCTGTATTCAGGACTATAAATGTGAATGAGCAAGCTAGGATTTTATATGATGCCTTATGCAGAATGCATTCTGTGGTGTCACTTAAAAGAGTCAGGGTTGGTCATGTTATTAGCAATTCATGGATTAACTCTGATGATGTACAGTATAGCCTGTCACTTCGTGATATTGCGTTTCGTTGCTATCTGAGAGATAGGACGGATGGATTGTGGAAGGTTTTCTGCCGTCTGAGAAATCGTGCTAAGACGGTTATGCGTAATGCTAAGCGCAGGGCACATTTCGAAAGGTTTAATGGTATGTCGTCGAAGCAAGTGTGGGATTTgctttcagttaatgggttggGTCAATCTAAGGTTTATGAGTTAGATGGTGTTGATGTTGAAGGTTTGAATGAGTACTTTGCTTCGAATCAAAATGAGGATTCTGTGGAGTGTTTTCCTCCTAATGAGGACTCAGATGTGGGAAGATTTTCTTTCCGTGCAGTTGATCTTGGGGAGTTATCTGAAGCTTTAATGTCTGTTACATCGAATGCTGTGGGTTGTGATGGAATCGCTGTCAAATACTTGAAATTAGTTTTTCCGATTATTGGTGAGTTTGTTCTGCATTTGGTAAATAGTATCATTGTTACGTCTACATTCCCTGATGGTTGGAAGCTGGCAAAGATTGTCCCTATTAGAAAGACGGGTTTGTCTACTGAGATGGATAACTTGAGGCCCATATCGATCCTTCCAACTCTTTCTAAAGTTGTTGAGATCTTGCTAAAGAGGCAGCTTATTACTTATATTGAAGAAAAGTCACTCTTAAGTGACTCGCAATATGGCTTTAGATATGGTAGAAGCACAACATCGCTCCTTTTGGGGCTCACTGATAAAGCTCGTCAATTGGTAAGTGAAGGTAGAGTGTGTGTATTGTTGGCTATTGATCTCACCAAAGCTTTTGACAAGGTGGATCAtggaactttaattaaaaagctttCTTGTAATTTTGGCTTGTCGAGGATGGCATGTAGACTTATTTCCTCCTTCCTTAGTAAAAGGAGTCAagaAGAGTTTGACGATGAAGTATTTGAACCAGTTACATATGACGATGATGAAGATGTTGTTAAAGATGACgacgacgatgatgatgatgaatatGAGCGtttcaaagcgaaaaaaaatatcGTGGAGCAACTATATCCTTGTGAAAGATGTAAACGAAAATTGAAATCGAAACTATCATTAAAAAGACATCTGGAAATGCACACGAAACGTGATAATGAAGAGCCAAAATTTATGTGCAACATTTGCGATAGagGATTTTCACAAGGTTACATGCTGAAAGATCATCTACGTTCCCATAGTGGTGAAAGACCATATTTATGCTCGGAGTGCGGCAAGTCTTTCACTTCGTCCGGCAGTTTAAAACAACACTCATTCCGCCatctaaatgaaaaacaattccCCTGTCCAGACTGCCCAAAATCCTTTCCCACTAGAACTGATCTGGCGTCCCATTCTGATGTCCATAATGCAAGACCTAGATCACATGTTTGCGATATATGCGGGCGAGGTTTCCCAAAAccgtttcttttaaaaaaacataaaatgtatCACACTAACGACCGACCGTTTTCCTGTGAATACTGCGGTAAACGttttgtaactAACGAGAAACTACAACGTCACGTGAGAATCCATACTGGCGAAAAGCCATACAAATGCAGTTATTGTGAAAAAGCCTACTGTCAGTCGAATGAATTAACCAAACATTTAAGAATTCATTTGGGTGATAATGTATATCAATGTGAATTGTGTCCTCTAAGATTTCCCACAGTCAAAGTAGTTCGAGAGCATTTCTCTACACACAAAAACGATGATGCAGAAACTAAAGTTCGCAATTTGGCAGAACTCAATGCTTTGACATTAAAAGGCATTTATTGTagataa
Protein Sequence: MSSNDNLGPIVCNNSYLESQLRQYNGKLNVGHMNIQSFKIGNSSTKLDELTGVLGNGLFGVLGITETWLKDGISSSAVSFPGYVLCLIDVVVVLLFLLLKGLSLRMNLSCHHNSLPTHLCVNSGSTSLIDYFLLSSSLLVSLSGQIQIPGISRHAFIYLSLDFNISSPIEYVEFFDYNNVDMSLLMETFSRCNCDSVFRTINVNEQARILYDALCRMHSVVSLKRVRVGHVISNSWINSDDVQYSLSLRDIAFRCYLRDRTDGLWKVFCRLRNRAKTVMRNAKRRAHFERFNGMSSKQVWDLLSVNGLGQSKVYELDGVDVEGLNEYFASNQNEDSVECFPPNEDSDVGRFSFRAVDLGELSEALMSVTSNAVGCDGIAVKYLKLVFPIIGEFVLHLVNSIIVTSTFPDGWKLAKIVPIRKTGLSTEMDNLRPISILPTLSKVVEILLKRQLITYIEEKSLLSDSQYGFRYGRSTTSLLLGLTDKARQLVSEGRVCVLLAIDLTKAFDKVDHGTLIKKLSCNFGLSRMACRLISSFLSKRSQEEFDDEVFEPVTYDDDEDVVKDDDDDDDDEYERFKAKKNIVEQLYPCERCKRKLKSKLSLKRHLEMHTKRDNEEPKFMCNICDRGFSQGYMLKDHLRSHSGERPYLCSECGKSFTSSGSLKQHSFRHLNEKQFPCPDCPKSFPTRTDLASHSDVHNARPRSHVCDICGRGFPKPFLLKKHKMYHTNDRPFSCEYCGKRFVTNEKLQRHVRIHTGEKPYKCSYCEKAYCQSNELTKHLRIHLGDNVYQCELCPLRFPTVKVVREHFSTHKNDDAETKVRNLAELNALTLKGIYCR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -