Basic Information

Insect: Tachina fera
Gene Symbol: -
Assembly: GCA_905220375.1
Location: LR999966.1:4285196-4288657[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.6e-05 0.0018 19.9 1.6 2 23 204 226 203 226 0.95

2 13 0.00076 0.088 14.6 2.7 1 23 232 254 232 254 0.94

3 13 0.0008 0.092 14.6 1.1 1 21 260 280 260 282 0.94

4 13 0.0003 0.035 15.9 2.0 1 23 288 310 288 310 0.98

5 13 0.27 31 6.6 2.6 1 23 316 338 316 338 0.95

6 13 0.00064 0.074 14.9 1.1 2 23 466 488 465 488 0.96

7 13 0.00044 0.051 15.4 1.0 1 23 494 516 494 516 0.99

8 13 5.6e-05 0.0064 18.2 0.8 1 23 522 544 522 544 0.98

9 13 2.5e-06 0.00028 22.5 3.4 3 23 552 572 550 572 0.96

10 13 0.0044 0.51 12.2 5.0 1 23 578 600 578 600 0.99

11 13 0.0012 0.14 14.0 0.2 1 23 605 627 605 627 0.98

12 13 0.0032 0.37 12.7 8.3 1 23 633 655 633 655 0.98

13 13 0.29 33 6.5 9.8 1 23 661 684 661 684 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.6e-05	0.0018	19.9	1.6	2	23	204	226	203	226	0.95
2	13	0.00076	0.088	14.6	2.7	1	23	232	254	232	254	0.94
3	13	0.0008	0.092	14.6	1.1	1	21	260	280	260	282	0.94
4	13	0.0003	0.035	15.9	2.0	1	23	288	310	288	310	0.98
5	13	0.27	31	6.6	2.6	1	23	316	338	316	338	0.95
6	13	0.00064	0.074	14.9	1.1	2	23	466	488	465	488	0.96
7	13	0.00044	0.051	15.4	1.0	1	23	494	516	494	516	0.99
8	13	5.6e-05	0.0064	18.2	0.8	1	23	522	544	522	544	0.98
9	13	2.5e-06	0.00028	22.5	3.4	3	23	552	572	550	572	0.96
10	13	0.0044	0.51	12.2	5.0	1	23	578	600	578	600	0.99
11	13	0.0012	0.14	14.0	0.2	1	23	605	627	605	627	0.98
12	13	0.0032	0.37	12.7	8.3	1	23	633	655	633	655	0.98
13	13	0.29	33	6.5	9.8	1	23	661	684	661	684	0.97

Sequence Information

Coding Sequence: ATGGATTCCAAAATATGTTTAACGTGTCTTCGTAAGCCATCTAAAGCTCACAGTGTAAATGATGTTATATTGGAAAACCATAAAATACTAGAAATACTTCATCAGGTGGTACCAGTGTTCTTGGAACAAAAGAAATTCTCAGTACCTGACACAATTTGTCCTTTGTGtttgaacaaacttattatatcctttaaatttcgaaaacagtgtttggattctataaaaaaattgcatacaacATTATGGGTGAAAAACTCTTCAGATAAAGTTAAGCAACAAAAAGCGTCTCAAATGAAGTTGGAGACAGAGAAtgttaaattcgaaattaatgATTTTAAGAATTATGAAGAAAATTCAATGGAATCTCTTCCTGAAATTAAGACCGACTTAAAAATGCCTTTTGACGAAATTGCAGTTGATCCTTTGATTGCAAATAAAGACGTGGAAATATTATATGGGCACGATTATAGTGAAAGCGAAAAACAGCTTAAAGAAAATGCTAATGATGAATTAAATgataaattacaaattaacGAAAATAGttacaacTACTTGGAACACGAAAATGTTCCCACAGGAGGTGTTGTGGAGCCATCAGTTGATACAAATCAATGTAAgatttgtaagaaaatatttaagcaacCTCAAAGCTTAACCTCTCATATGTCACAAACACATTTCAAGAAGCATTTATACCAATGTAAAAAGTGTGGCAAAGGTTTTAGTGTGGAAGAACTCTTCATAAGACACTGTAATAGCCATTTAGGTGTCAAACCTTTTCCATGTGCCCAATGTGATAAAGCTTTTGAAACTAATGGTagactaaatcagcatatgctTTGCCATTCTAAAGAGCTTTCTTATATATGTACTGTTTGTGGGAAAAAGTTTTACCGTATTGATGTTTACAAACAGCATAAGCGACGCCATGACGACGAGAAACTATTCCAATGTTTAAAATGtgctaaaacttttcaaactttTTCTGAGCATATGAAACACATTGAGGCACATAAAACTGAAAAGACCTTCGAGAGTAAAGTTTGTGATGAAAAGCTGTCAACATCCAATCAACAAGTTGAACATGAGGgACTTGATTCTAATGAACAATCGAAACCCCACCAAAAAACACGCACCGAAAGGAAACGTTATCCATGTACAAAAAAGAGCGAATTTAATGAACAAATTACAATGGACTCTGAAAGTGATGAAACATTAGAATTTCCATTGGAACAAACAATGACAGAATTTAAGCCTGAAAATAAGGAAGATAATGAAATTTCAGTTTCTTGCGATAAAATTGaggataatgaaaaatttaatgcaaaactAGAGGAAAGTGAGGACAGAAATGACATTGAATGTATTATTACACCAACCACGAATGAATCATCTCAATGTGATCTGTGCAATCAAGTATTTAAGAACCCTCATGGTTTAGCGCTACACAGGTCTAGGACTCACTTTAAGAAGCACTTATACCAATGCGATCAATGCGATAGAGGCTTTAGTGTTGAGGAATTCTATATAAAACATCGGAATCGCCATTTAGGCATAAAAACTTTCAAATGTAAACAGTGTGATAaagCTTTCGAAACAAATAGTATTCTCAACCAACATTTGATTTCTCATTCTACATTAACGCCACATTTATGCACCATTTGTGGCAAGAGTTTTCATCGTCCTGATGGCTTAAAAAAGCATATGTTACGCCACGGAGAAGAAAGGCCGTTTAAATGTTCGGTTTGTTCTAAAAGCTTTAAATGTCTCTCTGACAAATCAAGACACATGAGAATACATGATGAAAAACGTTATGATTGTAACATTTGTGGTTCACGTTTATCCACTCTTGAGTCCCTTGCGCAACATAAAATGACACATACAGGCGAAAAGCCTTTTAAATGTAGTCATTGTGAAAAATGCTTCATTTCTTTGTCCAATTTGAAATGTCATGAGAGAATACATACTGGCGAAAAACCTTATAAATGTCAATACTGTTGCAAGTCATTTCGGCAAAGCTCCGAGTGTAAAAAGCACACAAATCGCATgcataagaatgaaatgaataaCTCAAAACAGCAACGACCAGAAagcaaatttataaaacaaaaacatggacaatttttacaataa
Protein Sequence: MDSKICLTCLRKPSKAHSVNDVILENHKILEILHQVVPVFLEQKKFSVPDTICPLCLNKLIISFKFRKQCLDSIKKLHTTLWVKNSSDKVKQQKASQMKLETENVKFEINDFKNYEENSMESLPEIKTDLKMPFDEIAVDPLIANKDVEILYGHDYSESEKQLKENANDELNDKLQINENSYNYLEHENVPTGGVVEPSVDTNQCKICKKIFKQPQSLTSHMSQTHFKKHLYQCKKCGKGFSVEELFIRHCNSHLGVKPFPCAQCDKAFETNGRLNQHMLCHSKELSYICTVCGKKFYRIDVYKQHKRRHDDEKLFQCLKCAKTFQTFSEHMKHIEAHKTEKTFESKVCDEKLSTSNQQVEHEGLDSNEQSKPHQKTRTERKRYPCTKKSEFNEQITMDSESDETLEFPLEQTMTEFKPENKEDNEISVSCDKIEDNEKFNAKLEESEDRNDIECIITPTTNESSQCDLCNQVFKNPHGLALHRSRTHFKKHLYQCDQCDRGFSVEEFYIKHRNRHLGIKTFKCKQCDKAFETNSILNQHLISHSTLTPHLCTICGKSFHRPDGLKKHMLRHGEERPFKCSVCSKSFKCLSDKSRHMRIHDEKRYDCNICGSRLSTLESLAQHKMTHTGEKPFKCSHCEKCFISLSNLKCHERIHTGEKPYKCQYCCKSFRQSSECKKHTNRMHKNEMNNSKQQRPESKFIKQKHGQFLQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01399708;
90% Identity: -
80% Identity: -