Tfer034462.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121653106-121666325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.048 5.5 9.0 2.1 2 23 265 287 264 287 0.96 2 18 0.16 18 7.3 2.9 2 23 347 368 346 368 0.96 3 18 0.0018 0.2 13.5 2.5 1 23 445 468 445 468 0.97 4 18 0.029 3.4 9.7 3.4 2 23 476 497 475 497 0.97 5 18 0.0017 0.2 13.5 0.2 2 20 557 575 556 578 0.94 6 18 0.047 5.4 9.0 1.7 1 23 651 674 651 674 0.92 7 18 0.0033 0.38 12.7 0.3 1 22 681 702 681 702 0.96 8 18 0.0014 0.16 13.8 4.7 1 23 756 779 756 779 0.96 9 18 0.34 39 6.3 2.4 1 23 816 839 816 839 0.92 10 18 4.4 5e+02 2.8 1.4 2 23 894 914 892 914 0.88 11 18 3.8e-05 0.0043 18.8 1.2 1 23 920 942 920 942 0.98 12 18 0.00034 0.04 15.7 1.3 1 23 948 970 948 970 0.98 13 18 1.3e-05 0.0015 20.2 1.9 1 23 977 999 977 999 0.98 14 18 8.3e-05 0.0095 17.7 0.2 3 23 1028 1048 1027 1048 0.99 15 18 1.4e-06 0.00016 23.3 2.6 1 23 1054 1076 1054 1076 0.99 16 18 0.00054 0.062 15.1 1.9 1 23 1082 1104 1082 1104 0.96 17 18 4.2e-05 0.0048 18.6 1.3 1 23 1110 1132 1110 1132 0.94 18 18 6.7e-05 0.0077 18.0 1.0 1 21 1138 1158 1138 1162 0.91
Sequence Information
- Coding Sequence
- atgactAATAAGTGTTTTATTAATGGAGTGCAGTATAAATGTCGCACTTGCTTTGATCCAGGAGCAACAGTATTTCTTCTTGCAGAAGAGTGCAGCAACTCTAAAACTTGGGGAGATTTATTGACTAATATTGTTAAGTTAAATACAAACGACGACGAGTTACttccaaaaacaatttgttcGAAATGTTTGGAGAAACTTATCAGTTATTACGATTTTATACTTCATGTTCAAAATGTGAATGAAAAGTACCACCAGCTTTTAGCAAGTGGCAAACATTCTCCACAAAATGATAGTCTTGCGAGCAGCTCTAAGAATACAGCAGAGTTCTCAACAATATCTGCCACTGCTTTGCCTTTGGATCAGTGTGTTCCCGATATAAAGTTTGAAGACGAGCTCCTTATTCCTTACGATATTGTTTTGAATAACAACAATGGAAGAACCGATGTGGTAAAAGAAGAAACTTGCGATCCTTTTATGGAAACTTTGGAAGAGGATGTTGAGCTCGCTTTAGATATGTTGCAATACCAACAGAGatgccaaaatgaagaaaatcgAGTTCTTGAAGATGATATTAATGATGATAATTCTGATAACAGCTCTACATGTGCGGACGAAAGCGATTATCTGaatggaaaaagaaagaagaagGAAAATAAACTGAATGAGAATGGgtCCTCATCTTCCAGGAGTGCAAGTGAACATCACCTGCCCACTAGtcAGCCATTCGAAAAGAAAACTGAAGAACAATTCTGCAAATACTTTCCAATCGAAAAAGTCAACGATCATTTAGTGTGTGGGATATGcaagaaattattttcttcgCCGCAAACTTGTCGCAGGCATATAACCACGACACACTACCAAGGTAAATCTTACATATGTGCATTTTGCGATCAGCAGGCGCaatgtaaaaattacttaattggACATCTTAAGCGTACACATCCAGGCGAATCATTTGAATCCAATGCAAAACAATTAGGTCGTATGTTTGGGGAACGTCTGTATAGCAAACCTCTTCTATTACCACGAATAGAATGTAAACTGTGTTGCACTACAtttgtaactaaaaaaaaacttcttcagCATCTAGAGAGCCATAGTGAGATTGATACTCTAGACAGTTTACAATTAAACAGTGATATTATTCAGCGTTGGTTCAAAAATAAGAGAGATTTGCAAGTTATAAACACAATTATATGTAAAGACATTCGAGAAAAAAACTGGATCAaatattatacaattttaaatgatttttcttaCGAAGTATCCATTAGCGATACGGATGCAGAAGATTtggaaaaagaaacaaaagcacGGGCCAACAAATATAAATGCGAATTGTGTGGAAAAGACTTTTTGCACAAATATCAAGTGTTTTCTCATATGAGAGAGGATCATTTGAACGAAGACATTCCTTTGAAATGCAGCCATTGTAATCTGGAGTTTATATCAACGAAAATGTATGAACAGCATAAACAAACCCACTGCCTGTCTAAACATAAACTACTACTTTGTCCCCATTGCAATGGCAAGTTTGTCTGGCTCGTAAATATGAAACAACACAattgtgttaagaaaatattGGGTATTGAGAAACCtcttaatgttaaaataaataagagatGTAGTGATGAAATGCGTTCATCGCGAAAAGCTATCATAAGATGTGGTGTTTGTGACATGACCTTTGAAAAACTGCGCGATTTACGACGACACATGCCTTTGCACGCCGATGGCAAAACTGCAGTTGACTTTAATGGTTGCATTTATGTAAATCAATTTGAAACTTCATCCAGCAATCGCGAGTTGTTGCAACAGAagattaaaaatgcatttacgAAACGTCAAATAAGTCAGCTGTATCAAGCCATCGGTAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAGATGATGCTAatggcaaaaaattttatttgtgtgaACTTTGCAATGAAACGTTTCAAAAGCGAAAACAGGTGTTTAAACATCAAAGCGAACAACACAAGGATGTTCCAATGCCTTTCACTTGCAAGGAATGTAAGATGCAGTATGTTAATATAGATTTGTTAGAACAACATATGAAAAGAGAATGTTGGAATGAGCATCGACGAGTGGCTGAAAAATGCGATTGTTGTAAAGATCGTTTTATATGGCCGGATAGCATGCTGAGACATAAAGAAATACAGATGGATTCGGAAACCGAAACTGAAAGCATCGACAATGAAGAAAATGAAAAGACACTGCCTTATAAATGTTGCATATGTAGTAAATCATTTAAgcgaaaatttgaaataattcaacATCAAACATCGATGcacaattataaatttttgaaactcaAATGCGAACGTTGCTTTTTTAGAACTGTTTCACAGAAAGTTTTAGATTATCATAAAGTAAGCCAGTGTTTTAATATTGAGAAATTGCACCAATGCGATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTTGAAAAACATAATTCGATATTTCATACTTCGGACGTTTTCGTCAAAGCATTGCATGTGAGTAACACAACGAGCAATACTAATGCTCAATTGCTTGAATCAAAAGAACCTTCCCATATTAATTTGTCGTCAGCATTACATCAAAACGATTCAGATGCAAGTGACTGCATTCAATTTGAAGATAAATGTAAATGTCTCATTTGTGGAATTTACATTGCCAAAAGTAATTATTCAGAACATATTAAGAGACACGAATGTGACAAATGTTTCAAATGCGATTTTTGCGAAAtggaatttataacaaaatcgTTATTAAAGAAGCATCAGGACATGCATACGGGAGAACGTCCTTTCAAATGTGCCTTATGCTGGAAATCGTTCAAGCAGCAGAAAGGTCTAGATCTCCATAAACGTTTACACACCGAAAAAATACTACCATACGAATGCACAATTTGTTCAAAATCATTCCTGCAATCGGCACATCTGACTGCTCATATGCGATATCATTCGGGTGAAAAGTTGACGCCAGACAAGAAGTCGGACTCAACTGATGTTACTAAACTTTCAAAATGGAATAGAAAGACGAACTTATGTCCTATTTGTGGTGTCAACTTGTCATACAAAACAAATCTTACAATGCATATAAGAACCCATACGGACGAAAAGCCGTTCAAGTGCGATCTTTGTGATAAAAGATTTAACAGATCAACCGATTTAAATCTTCATCGACGCACGCACTTTACTGAACGTCCATTTAAATGTATAACTTGCGAGAAATCTTTTGTCCATAGAGGCAAATTAAAAGCTCACGTGCGCGTTCACACTGGCGAGCGTCCATATCAATGCACTATTTGTCAGAAAAAATTTACGAGTTCGGGCACTTTGAAGGAGCATTCGCTTGATCATACTGGCCAAAAACCCTTTAAATGTGAGATTTGCAATCTAGCCTTTAAACGTTCCTGGTATCTCAAAAAGCATCGTGTCAGAAGTGGCCATCATacagaaaataaatga
- Protein Sequence
- MTNKCFINGVQYKCRTCFDPGATVFLLAEECSNSKTWGDLLTNIVKLNTNDDELLPKTICSKCLEKLISYYDFILHVQNVNEKYHQLLASGKHSPQNDSLASSSKNTAEFSTISATALPLDQCVPDIKFEDELLIPYDIVLNNNNGRTDVVKEETCDPFMETLEEDVELALDMLQYQQRCQNEENRVLEDDINDDNSDNSSTCADESDYLNGKRKKKENKLNENGSSSSRSASEHHLPTSQPFEKKTEEQFCKYFPIEKVNDHLVCGICKKLFSSPQTCRRHITTTHYQGKSYICAFCDQQAQCKNYLIGHLKRTHPGESFESNAKQLGRMFGERLYSKPLLLPRIECKLCCTTFVTKKKLLQHLESHSEIDTLDSLQLNSDIIQRWFKNKRDLQVINTIICKDIREKNWIKYYTILNDFSYEVSISDTDAEDLEKETKARANKYKCELCGKDFLHKYQVFSHMREDHLNEDIPLKCSHCNLEFISTKMYEQHKQTHCLSKHKLLLCPHCNGKFVWLVNMKQHNCVKKILGIEKPLNVKINKRCSDEMRSSRKAIIRCGVCDMTFEKLRDLRRHMPLHADGKTAVDFNGCIYVNQFETSSSNRELLQQKIKNAFTKRQISQLYQAIGKDGKEMDISDSDSDEDDANGKKFYLCELCNETFQKRKQVFKHQSEQHKDVPMPFTCKECKMQYVNIDLLEQHMKRECWNEHRRVAEKCDCCKDRFIWPDSMLRHKEIQMDSETETESIDNEENEKTLPYKCCICSKSFKRKFEIIQHQTSMHNYKFLKLKCERCFFRTVSQKVLDYHKVSQCFNIEKLHQCDQCNFKFMWQENLEKHNSIFHTSDVFVKALHVSNTTSNTNAQLLESKEPSHINLSSALHQNDSDASDCIQFEDKCKCLICGIYIAKSNYSEHIKRHECDKCFKCDFCEMEFITKSLLKKHQDMHTGERPFKCALCWKSFKQQKGLDLHKRLHTEKILPYECTICSKSFLQSAHLTAHMRYHSGEKLTPDKKSDSTDVTKLSKWNRKTNLCPICGVNLSYKTNLTMHIRTHTDEKPFKCDLCDKRFNRSTDLNLHRRTHFTERPFKCITCEKSFVHRGKLKAHVRVHTGERPYQCTICQKKFTSSGTLKEHSLDHTGQKPFKCEICNLAFKRSWYLKKHRVRSGHHTENK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -