Tfer034459.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999966.1:121615810-121621425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0029 0.34 12.8 0.7 1 23 233 256 233 256 0.97 2 18 0.026 3 9.8 3.4 2 23 264 285 263 285 0.97 3 18 0.075 8.6 8.4 1.3 2 20 345 363 344 366 0.94 4 18 0.59 68 5.5 1.7 1 23 439 462 439 462 0.91 5 18 0.0041 0.47 12.4 0.6 1 21 469 489 469 490 0.95 6 18 7.3 8.4e+02 2.1 0.5 2 20 502 520 501 522 0.90 7 18 0.00038 0.044 15.6 2.3 2 23 564 585 563 585 0.95 8 18 0.0038 0.43 12.5 6.8 1 23 628 651 628 651 0.97 9 18 0.0067 0.77 11.7 0.7 1 23 688 711 688 711 0.97 10 18 1.2 1.4e+02 4.6 1.3 2 23 764 786 763 786 0.88 11 18 8.8e-05 0.01 17.6 0.5 1 23 792 814 792 814 0.98 12 18 3.5e-05 0.004 18.9 2.2 1 23 820 842 820 842 0.98 13 18 0.024 2.8 9.9 6.4 1 21 848 868 848 870 0.95 14 18 7.3e-05 0.0083 17.9 0.2 3 23 899 919 898 919 0.99 15 18 5.5e-06 0.00063 21.4 3.5 1 23 925 947 925 947 0.99 16 18 8.9e-07 0.0001 23.9 0.4 1 23 953 975 953 975 0.99 17 18 9.2e-05 0.011 17.5 1.1 1 23 981 1003 981 1003 0.96 18 18 0.015 1.8 10.5 1.5 1 22 1009 1030 1009 1033 0.90
Sequence Information
- Coding Sequence
- ATGATGAACGAATGTTTTATTAACGGAGTGCAGTATAAATGTCGCATTTGCTTTGATCCAGGAGCAACAGTATATCCTCTTGCAGAGGAGTGCAGCAACTCTAAAAGTTGGCGAGATTTATTGACCGATATTGTTAAGTTAAAGACAAACGACGAGGAGTTACTTCCAAAGACCATATGTTCGAAATGTTTGGAGAAACTTATCAGTTACTACGATTTTATACTTTATGTTCAAAATGTGAATGAAAAGTACCACCAGCTTTTAGCAAGTGGCAAACCTATTCCACAAAATGATAGTCTTGCCAGCAGCTCTAAGATTATAGAAGAGTTCTCAGCAGTATCTGCCTCTAAATTGCCTTTGGGTCAGTGTGTTCCCGAAATAAAGTTTGAAGACGAGCTCCTTGTTCCTTACGATATTGTTTTGAATAACAACAATAGAATAAACCATGCGGTAAAAGAAGATACTATTGATCCTTTTATGGAAACTTTGGAAGAGGATGTTGAGCTCGCTTTAGATATGTTGCAATACCAACAGAGatCCCAAAATAAAGACAATCGAGTTCTTGAAGTTGATATTAATGATGATAATTCTGATAACAGgtcCTCATCCACCAGTAGTGCAAGTGAACATCACCTGCCCACAAGTGATACAGATGCAGAAGATTTGGAAGAAGAAACATTAGCAGCTGCCAACAAATATAAATGCGAATTGTGTGGAaaagattttttgtataaatatcaaGTGTTTGCTCACTTGAGAGAGGATCATTTGAACGAAGACATTCCTTTAAAATGTAGCCATTGTAATCTGGAATTTATATCAACGAAAATGTATGAACAACATAAACAAACCCACTGCCTGTCTAAACATAAACTACTACTTTGTCCCCATTGCAATGGCAAGTTTGCCTGGCtcgcaaatatgaaaaaacacaATTGTGTTACGAAAATATTGGATATTGAGAAACCtcttaatgttaaaataaatgagAGTTGCAATGATGAAATGCGTTCATCGCCAGAAACTATCATAAGATGTTGTCTTTGTGACATGAACTTTGAAAAACTACGCGATTTACGACAACACATGCCTCTGCACGCCGATGGCAAAACTGGAGTTGACTTTAATGGTTGCATTTATGTAAATCAATTTGGAACTTCATCCAGCAATCGCGAGTTGTTGCAACAGAAGATTAAAAATGCCTTCACGAAACGTCAAATAAGTCAACTGTATCAAGCCATCGATAAGGACGGCAAAGAAATGGACATTTCAGATTCGGATAGCGATGAAgatgatgctgatgatgaaaAAAGCTATTTGTGCGAACTGTGCTATGAAACGTTTAAAAAACGAAACATTCTGTTTAAACATCAAACTGAACAACACAGAGATGTTTCAATGCCCTTCACTTGCAAGGAATGTAAGATGCAGTTTGTTAGTATTGATTTGTTACAACAACATACGAAAAGAGTATGTTGGAATGAGCATCGACGAGTAGCCAAACAATGCGATTGTTGTAAAGAGCGTTTTATATGGCCGGACAACCTGCTGAGACATAAAGAAATACAGcgatacataaatattgaaaattcgcAAACGGATAACGTGTGTCGTACCCAGGCACAGAAAACAATAATAGCTTCATCAATCTCCAACTCTGATGTGTCGGGTGCCAATATCGaagtttgttattgttttttatgtCCTAAAACTTTTGCCAATAATGATCAGTTCAATGATCATTTGATCCGTCATCGTGTCGAACCATCCACCATCAAAATTGTTGCAAGCACAATACATTCCGTATGGTGGCCAAACGAGCTGAACTCGGAAACGGAAACTGAGAGCATCGACAATGAAGAAAATGGAAAGACATTGCCGTATAAATGTTGCATGTGTACTAAATCATTTAagcgaaaatttcaaataactcAACATCAGACATCGATGCACAATTATGAATTGTTGGAACTCAAATGCGAACGTTGCTTTTTTAGAACTGTTTCACAGAAAGTTTTAGATTATCATAAAGTAAGCCAGTGTTTTAATGTTGAGAAATTGTACCAATGCGATCAGTgtaatttcaaatttatgtgGCAAGAGAACCTCGCGAAGCATATTTCGATATTTCATACTTCTGATGTTATCGTCAAAGCACTGCCTGCGGCTAACACAACGGGCTATACTAATGTTCAATTCCTTGAACCAGAAGATGCTTCCCAGAATGATTTGTCGTCAGCATTGCATCAAAACGATTCAGATGCAAAGGACTGCATTCAATCTAAAGATAAATGTAAATGTATCATTTGTGGAATTTACATTACGAAAACTAATTATTCAGAACATATTAGGAGACACGAATGTGACAAATCTTACAAATGCGATTTTTGCGAAATGGCCTTTATAACAAATACCGCATTAAGGAAGCATCAAGTCATGCATATAGAAGAACGTCGTTTCAAATGTACTTTATGTTGGAAATCGTTCAGGCGGCAAAGTGGTCTAGATGTCCATAAACGTTTCCACACCGAAAAATTACCACACAGATGCACGATTTGCTCGAAATCATTTCTGCAATTGGCACATCTGACTACTCATATGCGTTGTCATTCGCGTGAAAAGCCGACGCAAGGCAAGAAGTCGGACTCAACTGGTTCTACCCAACATGCCCAAGGGGAGAGAAAGACGAAGTTGTGTCCTATTTGTGGTGTCAATTTGTCATACAAAACAAATCTTACTATGCATATAAGAACCCATACGGGTGAGAGACCATTCAAGTGCGATCTTTGTGATAAAAGCTTTAATAGATTAATCCATTTAAACATACATCGACGCAGACACTTTACTGAACGTCCATTTAAATGTACAATTTGTGAGAAATCTTTTGTCAGTGCAGTCAGATTAAAAGCACACATGCGCATTCACACTGGCGAGCGTCCATATCAGTGCACGGTTtgtcagaaaaaatttattaattcagGCACTTTGAAGGAGCATTCGCTTAATCATACTGGTAATAAACCCTTTGTATGTGAGGTTTGCAATTATGCCTTTAAATGTCCCTGGTACCTCAAAAGGCATCGTATCAAAAGTGGCCATCATACAGAAAATAGTTGA
- Protein Sequence
- MMNECFINGVQYKCRICFDPGATVYPLAEECSNSKSWRDLLTDIVKLKTNDEELLPKTICSKCLEKLISYYDFILYVQNVNEKYHQLLASGKPIPQNDSLASSSKIIEEFSAVSASKLPLGQCVPEIKFEDELLVPYDIVLNNNNRINHAVKEDTIDPFMETLEEDVELALDMLQYQQRSQNKDNRVLEVDINDDNSDNRSSSTSSASEHHLPTSDTDAEDLEEETLAAANKYKCELCGKDFLYKYQVFAHLREDHLNEDIPLKCSHCNLEFISTKMYEQHKQTHCLSKHKLLLCPHCNGKFAWLANMKKHNCVTKILDIEKPLNVKINESCNDEMRSSPETIIRCCLCDMNFEKLRDLRQHMPLHADGKTGVDFNGCIYVNQFGTSSSNRELLQQKIKNAFTKRQISQLYQAIDKDGKEMDISDSDSDEDDADDEKSYLCELCYETFKKRNILFKHQTEQHRDVSMPFTCKECKMQFVSIDLLQQHTKRVCWNEHRRVAKQCDCCKERFIWPDNLLRHKEIQRYINIENSQTDNVCRTQAQKTIIASSISNSDVSGANIEVCYCFLCPKTFANNDQFNDHLIRHRVEPSTIKIVASTIHSVWWPNELNSETETESIDNEENGKTLPYKCCMCTKSFKRKFQITQHQTSMHNYELLELKCERCFFRTVSQKVLDYHKVSQCFNVEKLYQCDQCNFKFMWQENLAKHISIFHTSDVIVKALPAANTTGYTNVQFLEPEDASQNDLSSALHQNDSDAKDCIQSKDKCKCIICGIYITKTNYSEHIRRHECDKSYKCDFCEMAFITNTALRKHQVMHIEERRFKCTLCWKSFRRQSGLDVHKRFHTEKLPHRCTICSKSFLQLAHLTTHMRCHSREKPTQGKKSDSTGSTQHAQGERKTKLCPICGVNLSYKTNLTMHIRTHTGERPFKCDLCDKSFNRLIHLNIHRRRHFTERPFKCTICEKSFVSAVRLKAHMRIHTGERPYQCTVCQKKFINSGTLKEHSLNHTGNKPFVCEVCNYAFKCPWYLKRHRIKSGHHTENS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -