Basic Information

Insect: Tachina fera
Gene Symbol: -
Assembly: GCA_905220375.1
Location: LR999967.1:14568827-14573893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.02 2.4 10.1 0.5 1 23 359 382 359 382 0.93

2 12 0.00036 0.042 15.7 1.4 2 23 385 406 384 406 0.97

3 12 0.00034 0.039 15.7 0.4 1 23 413 435 413 435 0.98

4 12 5e-06 0.00057 21.5 1.8 1 23 441 463 441 463 0.99

5 12 0.0022 0.26 13.2 5.7 1 23 470 492 470 492 0.98

6 12 7.2e-05 0.0082 17.9 1.5 1 23 498 520 498 520 0.96

7 12 7.3e-05 0.0084 17.9 0.3 1 23 526 548 526 548 0.95

8 12 0.00014 0.016 17.0 0.8 1 23 554 577 554 577 0.97

9 12 0.00072 0.083 14.7 1.7 1 23 583 606 583 606 0.95

10 12 5.4e-05 0.0062 18.3 1.8 1 23 612 634 612 634 0.98

11 12 0.00013 0.015 17.1 0.5 1 23 640 662 640 662 0.96

12 12 0.0018 0.2 13.5 0.2 1 22 668 689 668 692 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.02	2.4	10.1	0.5	1	23	359	382	359	382	0.93
2	12	0.00036	0.042	15.7	1.4	2	23	385	406	384	406	0.97
3	12	0.00034	0.039	15.7	0.4	1	23	413	435	413	435	0.98
4	12	5e-06	0.00057	21.5	1.8	1	23	441	463	441	463	0.99
5	12	0.0022	0.26	13.2	5.7	1	23	470	492	470	492	0.98
6	12	7.2e-05	0.0082	17.9	1.5	1	23	498	520	498	520	0.96
7	12	7.3e-05	0.0084	17.9	0.3	1	23	526	548	526	548	0.95
8	12	0.00014	0.016	17.0	0.8	1	23	554	577	554	577	0.97
9	12	0.00072	0.083	14.7	1.7	1	23	583	606	583	606	0.95
10	12	5.4e-05	0.0062	18.3	1.8	1	23	612	634	612	634	0.98
11	12	0.00013	0.015	17.1	0.5	1	23	640	662	640	662	0.96
12	12	0.0018	0.2	13.5	0.2	1	22	668	689	668	692	0.92

Sequence Information

Coding Sequence: ATGGAATCAGTACGCTGTTATCTATGTGACCATGAGTTCGTTGAAGGTGAGGAGCCATGGCTGATGTTTGAGCAGCGATTACGTGAGGATGGAAAGGTTGAATGTTCGCTGGCCGATTTGTTAAGTTCTATACTACAGAAGCATTTGGAGGAATCCTTAGCTCATTCGACGTTACTTTGTGATTCATGCAACGCAGATGTTTTGGAATATGAAAACTTGGAAAAACGTTTTTCTCAAATACGAGACagaattttaaaatcatataaagAAAATTCCACTATAAGCAATCTAAATAATTCACTACAAAACACTGCCTTCAGCAATTGTACCTTGCCACATCCCACAGTCGATGGCAGTAATAAATTGCTAATTACCAATCCTGAAGATATTGACGATATGACAAACTCTGATTATGCCGGCATCATGGATATAGATTTAATAGAAGAAGTTCAAGACGAAGAAGTCGATTTTGAAGGGCATGAAAATGTCGATGTCGAAAATGTACTGGTTAACGAGACTATACCGGCTGAACGGAAAGACTGCGCATTTATTGACGTTACTTCAGCAGCATTGACTgataattttgattttgctgCTTTCAATGAACACGTTGCTCAAAATTCTTTGCCCTCTGGTGTATTAAATTTATCTGATGGGCTGGTAAATTTAGATGTTTCGGAAAAGAACATACAAGGACAAGAAAACATAATTATATACGATGCCAATTCGGATCATTTTCAGGAAACTGACTTGATAACTCAACAAGATAGTTGCGGAGATCTACAAAGTTACGATAGCAACGAAGATGATGATCTCGATTTTATTATAAGTCCCGACATTTTTACCAGCGAAAGAAACTGTGACGAGTCTCAACAGTCGGCCACTTCTGATGCAATGTTAAGCAGTGGGGAAAATCAAAAGGACACAGAGGCTGAAAAGAAGTTTAAAATTCCCCCAAAGCCTGTTTGTATGAAAGAAGGCGAATATTTCACTTGCCTCGTTTGCGAGATATCTGCGCAATTCGAAAGgaatgaattaataaaacatttccatacaaagcataatgcaaaattttatatgtgCGAGCACTGTTATGAGGGATTTGGAAAACGGCAAGATCTAAGAATACATAGCGAAATAGGCCATGAAATTCAATGTGACTCCTGTGAACGTACCTTCACAAGTCTGCGTCTTTATCGTGCACACAAGCGTACGCATTTGGGTAACAGCAAACCCTTCGAATGTACCGTATGCCAGAAAAAATATGTCTCGAAAGCGATTTTGGAAGAGCACATGAACACTCATACGGGTGTAAGACCCTACCAATGTACCGAATGCTCCAAAgattttgcttcgaaatatacACTGTATACACACATGAAAATTCATAAAGACAGACCGCGTCCATACAAATGCGATCAGTGCCAGAAATGCTTCTTGAATCAGCAAAACCTTAATCAACACAAAAAACTGCATGTCTCGGTGAGAGCCTTCGAATGCGCTGTGTGCCACAAGGCCTTTGCCACACAGCATAGCTTGCAAGTTCACAAAGTGGTGCATTCGGGCCAGAGGCCTTTTCTTTGTCGCATTTGCGGCAAATCATTTGCTCGCCGACCAGAAATTCAAGATCATGAACGCACTCACACCGGCGAAAAGCCATTTAAATGTGAATTCTGTCCCCTGGCATTTGCTCAGCGCACCAATTTGGCCACTCACAAAAAATCCACacatttgaatgaaaaattacacaaatgCGAAATATGTTTGAGATCCTTTAAGCGCAAACGTTTATTAGATTATCATATACAAGCCATTCATACGGGCGAACGACCgcataaatgtgaaatatgtgGATCAGGATTTGTCTATCCAGAGCACTACAAGAAGCATATGTTAATACACAGCGGCAAGAAGCCATACGCCTGTGAAGTTTGTGGCAAACAATTTAATAGTCGTGACAATCGCAATGCCCATCGTTTCGTGCACAGCGATAAGAAGCCTTACGAATGTTTGGAATGCGGTGCGGGCTTTATGCGCAAACCTCTACTGTTAACGCAcatgaaacaaacaaaacatataAGTGATACAATTATTGTTAATCAGCCTCAATTTACTCATCATTCTTCGTCCTCATCTAACACTCAGCGGGTTAATTTACAAGAAGAAGCGGATTCCGAAGTGGATGTAGACAACGATCTAACGACGGACGATATTGGCGATGAggttatggaaaaaatatttgacaccGAAGACTTGCTGGccgaaaatatttccatttctACGTATGCTAATGATGAAAATGAGATTGCAGTGGtggatgaaaatataattaagggTCAACTAGACGACGTCAAATATTTAGAATATGAAGAGTTGGAACGTGAAGGACATCAAGTACTCACTTGGGTGGATATATGA
Protein Sequence: MESVRCYLCDHEFVEGEEPWLMFEQRLREDGKVECSLADLLSSILQKHLEESLAHSTLLCDSCNADVLEYENLEKRFSQIRDRILKSYKENSTISNLNNSLQNTAFSNCTLPHPTVDGSNKLLITNPEDIDDMTNSDYAGIMDIDLIEEVQDEEVDFEGHENVDVENVLVNETIPAERKDCAFIDVTSAALTDNFDFAAFNEHVAQNSLPSGVLNLSDGLVNLDVSEKNIQGQENIIIYDANSDHFQETDLITQQDSCGDLQSYDSNEDDDLDFIISPDIFTSERNCDESQQSATSDAMLSSGENQKDTEAEKKFKIPPKPVCMKEGEYFTCLVCEISAQFERNELIKHFHTKHNAKFYMCEHCYEGFGKRQDLRIHSEIGHEIQCDSCERTFTSLRLYRAHKRTHLGNSKPFECTVCQKKYVSKAILEEHMNTHTGVRPYQCTECSKDFASKYTLYTHMKIHKDRPRPYKCDQCQKCFLNQQNLNQHKKLHVSVRAFECAVCHKAFATQHSLQVHKVVHSGQRPFLCRICGKSFARRPEIQDHERTHTGEKPFKCEFCPLAFAQRTNLATHKKSTHLNEKLHKCEICLRSFKRKRLLDYHIQAIHTGERPHKCEICGSGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECLECGAGFMRKPLLLTHMKQTKHISDTIIVNQPQFTHHSSSSSNTQRVNLQEEADSEVDVDNDLTTDDIGDEVMEKIFDTEDLLAENISISTYANDENEIAVVDENIIKGQLDDVKYLEYEELEREGHQVLTWVDI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01398773;
90% Identity: iTF_01398773;
80% Identity: -