Basic Information

Insect: Tachina fera
Gene Symbol: ham
Assembly: GCA_905220375.1
Location: LR999965.1:11900391-11964012[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.3 34 6.5 0.1 2 22 293 313 292 315 0.79

2 9 0.12 14 7.7 4.6 1 23 322 345 322 345 0.92

3 9 2e-07 2.3e-05 25.9 3.3 1 23 351 373 351 374 0.96

4 9 2.4e-06 0.00027 22.5 1.7 1 23 380 402 380 402 0.95

5 9 2.8e-05 0.0032 19.1 4.9 1 23 408 430 408 430 0.99

6 9 0.0039 0.44 12.4 0.4 2 21 438 457 437 458 0.95

7 9 9.3e-09 1.1e-06 30.1 1.3 1 23 905 927 905 927 0.99

8 9 4.9e-07 5.7e-05 24.7 0.9 1 23 933 956 933 956 0.97

9 9 8.5e-05 0.0098 17.6 6.6 1 23 962 984 962 984 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.3	34	6.5	0.1	2	22	293	313	292	315	0.79
2	9	0.12	14	7.7	4.6	1	23	322	345	322	345	0.92
3	9	2e-07	2.3e-05	25.9	3.3	1	23	351	373	351	374	0.96
4	9	2.4e-06	0.00027	22.5	1.7	1	23	380	402	380	402	0.95
5	9	2.8e-05	0.0032	19.1	4.9	1	23	408	430	408	430	0.99
6	9	0.0039	0.44	12.4	0.4	2	21	438	457	437	458	0.95
7	9	9.3e-09	1.1e-06	30.1	1.3	1	23	905	927	905	927	0.99
8	9	4.9e-07	5.7e-05	24.7	0.9	1	23	933	956	933	956	0.97
9	9	8.5e-05	0.0098	17.6	6.6	1	23	962	984	962	984	0.98

Sequence Information

Coding Sequence: atgaTTTTCGATCGCTATGCTGCTGCAGGCAGCACGGTCGACGATTACGAATTTGGTGCATTTAAACAATATCAAAATAATCTCGCCTCACCAGACTCCACAAATACTCTAAGATTGAATACGAGCAATTCGGATCTGAACAATTATCAGTACAATAGCCACCACCGTATGAACGGTTATAGTCAAAGTAATTCCCCCCCAAGTCGCAGCACTTTGGGCATTGATTCAACTGCACTGGTCGTCAATACATTGCCCCAATCACCCGCCCACATGGAACATTTATTTACTAGTAAATTACAAGCTGAAAGGCTTTTATTAGAACTGACGTGTCTACAGGAACCGATCTGTGATTTAAAACAACCAAGCGAGAGTGGAGTTTTTGCCAAACAGCATTTGAGAAGGGGTACACGTTTCGGACCATTTGCCGTAACGGAGGCGACGGAAAAATCGAATGCTTGGGATATATTGCCCATTAGCCATATCAGAAGCCTATTGGAACCTTCACCCGAAGTCAAGTCTTTGCTTAAGAAAATTCGAATATCATCCAACAACTCGGAACTGGAGAAGGAggctaattttaataatttctatgTAGCAGGATGTCTTTGGTATGAATCAAATCGTGATATAGAAGCTGGTGAAGAGATCATAATTGATGGTCGGCCCAAAGCTCTTTACGAGCAGCATGAATTGTTTACAAACGGTGAAGCGCACAATAATGGTTCCTCAATACACAGCAGTGATGATAGAAGTGAACGTGATAATGCCTCATTTTATGGATCAAATCTTAAACGTGATGAGGATTACAACAAAAAGGATAAATCAAGCGAACATATCAAAAGTGAATTAAGTGATGATGAAACCGGTTTCGATATACGCTGTGAAGTCTGCGATAAAACATTTCTACAATTAGAGCGACTGGATGATCATTTGATTGCTGCTCATCATTTTCGTAAGGAcgaatttttttgtgaattgtGTTCCCAGCGCTTTTGCCATCGGCCGCTGTTATTAAAACATCGGGCTCTGCAGCACAACGAAATACGAAAATATCCGTGTGAAAATTGTACCAAGGTATTTTGTGATCCCTCAAATCTACAGCGACATATTCGTAACCACCACATTGGAGCCAGAAGTCACGCTTGCCCGGAGTGCGGTAAAACTTTCGCTACATCGTCGGGTCTCAAGCAGCACACGCACATACATTCCTCGGTAAAACCATTCCAGTGTGAAGTTTGCTTCAAGGCCTACACCCAGTTCTCGAATTTGTGCCGCCACCGGCGCATGCATGCTGATTGTCGTATGCAAATAAAGTGCAGCAAGTGTGGTCAAAGTTTTGGCACGGTCACGGCTTTGTCCAAACACAAACGGTTTTGTGATTCTGCCAACGTAACACCTGCAGGAGTTGGCCTGGCGCCCAATCTAGCGCATCCCTTAACACACCATCATCAAGCGCAGGCACAATCACCTTCTCCATCTAGGACAGCAGCGGTAAACGGTGCTTTAGCCGCCAATATGACAACACCACCAAATCCTTTTCTTTTCTGGCGTTCTACCTTCTTTCCGGCATTTCCGCCAGCGGCTGCTGCTTTTGGTCTGCAGGGCATGTTTCCCCAGCCACCAGCAGCCACACAGACGCCCAACTTTGTACCCATGTTCAATAAGCCGAATGTAGACTTTAAGCTGCAGCAAATGAGATGCCAGCCCCCACCGAATGCGCTCAATACACACAGCAAcattaacaataacaacaacaacaatagcatcAACCCTACTAGCTTAACAAaagcaacaaattctttaaacaaTTCTACCAACAAACAGGAAGTAATTTCCAGCACCGTGCCCGAGAATTTTGGTCTCTACTTTCCCTCCCTGGAAATGGATTATAAATTGAAACGTGACAAGTGCTTGGCGGACACTCATGTGAGACCGTATAGAAAAGAAACTCAGCATTTGCCTGCTGCTGATGAAGAGTCCCGAGAGGAAAAGCTAAAAGCGAAATTGGATATAAAAAGGGAAATAAAGAAAGACAAGGAGGAAACGCTGAAAAGGGAAGAAGACGAGGATGTTTCACTCAAAACAAATGATGATGATAagAAATCCATTGATATTGTCTCGGTTTCGCCCCACCACGAAGCGGATGTTAAAAGTAATTTTGCTGAACTGCCTCTGGATTTGAGTGTAACACGCAAAAGAAATAGTGTGGACTCTAACTTTAGCCAGGAAGAACAAAAATCCTTTGCAGATGACAACACTTCAGCAGTCAGTCCCATCAACAACGAAGAGCTCAGCAATACTGGCAGTTATGAACAGGCTACCAAAAAGCCAAGACGTTTCAACAACGTTTCCGTCAACAGCAGTAGAACGCCAACGGCTTCACCGGGACCCACACCCTCACCCTCGCCTCCCTGCAATGTGAGCAGCACAGCAGCAGCAggaaatgaaaacaattcagTTCCATTGCCCACATGTCCCCGGCCCATACATCCCATGCTGCTGGATGAAATCTATCGTACACGTGCTCTGGAATCCACATTTCCACGCACGTTTCCTTTTTTAGGACTAATGGGCGAACGTGCGGCCTTAGATGCCAATGCTCTACGCGCTCGAGAAGAGCAGTTTAGTGCCGAGCCCTTGTTTCATGAGGCTTTAAGGGGTCTGTCGGCGGGTGCTTTACAAGTGGCCCAATCCGGCAAATTAAAGGATCGTTATACGTGCAAGTTCTGTGGCAAAGTATTCCCCAGATCCGCCAATCTTACCAGACACTTGAGAACACACACCGGCGAACAACCCTACACTTGCAAATACTGTGATCGTGCTTTCAGTATCTCTTCGAATCTGCAAAGACATGTGCGCAATATACACAACAAGGAAAGGCCTTTTCGTTGCCATCTATGCGATCGTTGTTTCGGCCAGCAAACAAATTTGGATCGTCATTTGAAGAAACATGAATCGGATACCACGGGCATGGGCTTGGCCATCAGTGATTCGCCCAGTTCGAATGAAGCCGATCGTGAGGATTCATATTTCGATGAAATACGCAATTTCATGGATCGTGTCACCTACAACGAGGACTTGTATACCCCCTCCAGCATAGGGAATGCCGAAAATGAGGCCAGTGATTACAATGCCAGTGATAATGACAATGAGCTATCCGTCTCACGGCCCTCATCGGCCGGGGGGGCCACCAACGATCACCATAAAGCTATGGAGGCTAATGAAATTTTAGATGAggattaa
Protein Sequence: MIFDRYAAAGSTVDDYEFGAFKQYQNNLASPDSTNTLRLNTSNSDLNNYQYNSHHRMNGYSQSNSPPSRSTLGIDSTALVVNTLPQSPAHMEHLFTSKLQAERLLLELTCLQEPICDLKQPSESGVFAKQHLRRGTRFGPFAVTEATEKSNAWDILPISHIRSLLEPSPEVKSLLKKIRISSNNSELEKEANFNNFYVAGCLWYESNRDIEAGEEIIIDGRPKALYEQHELFTNGEAHNNGSSIHSSDDRSERDNASFYGSNLKRDEDYNKKDKSSEHIKSELSDDETGFDIRCEVCDKTFLQLERLDDHLIAAHHFRKDEFFCELCSQRFCHRPLLLKHRALQHNEIRKYPCENCTKVFCDPSNLQRHIRNHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHRRMHADCRMQIKCSKCGQSFGTVTALSKHKRFCDSANVTPAGVGLAPNLAHPLTHHHQAQAQSPSPSRTAAVNGALAANMTTPPNPFLFWRSTFFPAFPPAAAAFGLQGMFPQPPAATQTPNFVPMFNKPNVDFKLQQMRCQPPPNALNTHSNINNNNNNNSINPTSLTKATNSLNNSTNKQEVISSTVPENFGLYFPSLEMDYKLKRDKCLADTHVRPYRKETQHLPAADEESREEKLKAKLDIKREIKKDKEETLKREEDEDVSLKTNDDDKKSIDIVSVSPHHEADVKSNFAELPLDLSVTRKRNSVDSNFSQEEQKSFADDNTSAVSPINNEELSNTGSYEQATKKPRRFNNVSVNSSRTPTASPGPTPSPSPPCNVSSTAAAGNENNSVPLPTCPRPIHPMLLDEIYRTRALESTFPRTFPFLGLMGERAALDANALRAREEQFSAEPLFHEALRGLSAGALQVAQSGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHESDTTGMGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEDLYTPSSIGNAENEASDYNASDNDNELSVSRPSSAGGATNDHHKAMEANEILDED*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01177160;
90% Identity: iTF_01398772;
80% Identity: -