Tfer000309.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- su(Hw)
- Assembly
- GCA_905220375.1
- Location
- LR999963.1:6147127-6156101[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00039 0.044 15.6 2.4 1 20 130 149 130 151 0.94 2 12 6.2e-06 0.00071 21.2 0.4 2 23 201 223 200 223 0.94 3 12 0.082 9.4 8.3 0.1 1 23 229 251 229 251 0.93 4 12 2.7e-06 0.00031 22.3 2.1 1 21 258 278 258 279 0.95 5 12 3.3e-05 0.0038 18.9 3.9 3 23 292 312 290 312 0.96 6 12 2e-06 0.00023 22.7 3.4 1 23 323 345 323 345 0.98 7 12 8.2e-05 0.0094 17.7 0.8 1 23 351 373 351 373 0.97 8 12 1.8e-05 0.002 19.8 1.0 1 23 379 401 379 401 0.99 9 12 2.4e-05 0.0028 19.4 2.0 1 23 407 429 407 429 0.97 10 12 2.5e-06 0.00029 22.5 0.9 1 23 433 455 433 455 0.98 11 12 0.0018 0.21 13.4 0.5 2 23 469 492 468 492 0.91 12 12 5.3 6e+02 2.6 0.2 3 23 507 528 505 528 0.93
Sequence Information
- Coding Sequence
- ATGAGTTTGCTAAAAGAAACTGAAAAATCCCACGCTAGGCGTTCTAGTTCGggaattaaaatactcaatgaCGAAAGAGTGATAGCGCCATTGCCTTTAAAAATACCAACAGCCCATTCGAAACCTAAACAAATAAGATTGTCCATTGCCGAACCAAAGAAgggtttgaaacaaaaaaacatgGATCACTATGTGATGAAAACGGTAAAAGAAGAGAAAAGTACTGATAATGGCATCGAAGAAAGTGAAACGATTGATTTCGTATTGACGGAAAATATTGAGGACGACTCGCCGAGACCAACTGGAGAGATAACGGAAGAATTACATTTAAGTGAAGATGAAGATCATGATTCAGCCTTTGCACCAGGGCAGTCAGATATCGTTGAACATGTTTGTGgaaaatgttataaaacttTTAGGCGTTTGaagagtttaaaaaaacatttagatTATTGTCGTTTCGATAGTGGCTACGGTGACCGCAAAGCAGAAATGATAAAAAACTTGGAGAAAATCGAAAAGGATGCCATCATGATGGAGAATAAAGATGTCTGTTTTTGTTGCGGCGAAAGTTATGATACATTTcatTTGGGTCACATTAGTTGTCCTGATTGCCCCAAATCGTTTAAAACACAAATGAGTTATGAACGTCATATATTTATAACGCATTCTGAGTTTGATGATTATGCCTGCAGTATTTGTAATGCTAAATTGCGCAGTGCTAATCTGTTGAAATTGCATGAAGACCAACATCGTAATCGAGGAAAACCGTTTGCCTGCAAGATATGTGGCAAAGATTTTACTCGTTCCTATCATTTGAGTCGTCATCAAAAGTATTCTTCTTGTTCGGGCAATGAGAATGATACAATGCATTGTAAAGTGTGCAATAAATCATTCTATCGCTTAGACAATTTAAGATCGCATCTGAAACAGCATTTGGGTACTCAACAAACAAAGAAATCGGAGTACATGTGTCcaatttgtaaaaaatgtttCTACAGCTTGTCAACTTTAAAtattcacACACGCACCCATACTGGAGAAAAACCATTTGATTGTGATTTATGTGAGAAAAAGTTTCCATCATTGGTTGCTTTAAAAAAGCATCGACGTTATCATACCGGAGAAAAGCCTTATACTTGTTCGGTGTGTAAACAATCGTTTGCTGTTAAGGAAGTTTTAAATCGTCACATGAAACGTCATACAGGCGAAAGGCCTCATGTGTGCAACGAATGTGGCAAAAGTTTTATCCAAGGCACTCAACTTCGCACTCATAGCAAGACCCATTTAAGGCCCTACGAATGCGAACAATGTCCCGAAAAATTCAAAACGGAGAAGCAATTAGAAAAACACATGAAAGAACACAGTGTAAAAAAGCGAAAGGGGCGCATGCGCCTGGCAAATAAATGTGATATATGCAAGATTGGCTTTAAAACGGAACTGGATTTTAACAAACACATGCAGATTGGTAGACATTACAcgCCTGCACAAAGACGTAAACTGAGGAATCGCACCGATTGCGCAGTTTGCAGAGAACAATTTGATTCTGTGCAAAGTCTTCAATTCCATATACTTAAAGTTCACCAAGAAGATCCCGAAACGTTTCTTAATGAGGATCCCTTTGATAATACTTCGCATGTTGAGGACGTTGATGCAATTTTAATGCCCACtccaaaagtaatcaaaatcgAGGATGATCAAGGTGAACAAATAGAATTCGTTACAACCAATTGTGACGGTAAAATTTTGAATACGAACGTTCAGAGTTTAACTAAAGAAGAAACGAGTTCTGATAGCAAAGATACATCACCAAATAAAGTGCGTATTCTGGAGCAATATATATATGATAGCCCCTCAACATCTCTGAGCGCTGGCAGCAAACAGACAATATTCCTGTCGAATGAAGCATTCACTGTAATACCCTTAGAATCGGCTGGCGGCTTAATAGAACCCATTACAACAACCACCTTGCCAAGTAATATTATAAGtcctgaattaaaaaaagaacaacgCAAAGCTTTGGGTGAAAGTTTGGCCGCTGCCATAGCCGATCGTGTAGAAAATGAATTAAACGATAGCAACGAAGAGCCAAAATATTCTGAGGaagaatgcaaaattaaagatAATGTAAGCAAATTATTAGACATGCTGGTGGATAGTTCAACACTTAAGAAATTCGGTTGGCCTGGCATTTCAGAGGAAACTGTGCTTTGTAAAGTTATTGAAAACTGCGGTCACGATTTATCCAAGGACCAATATAACTATGCCAGTTGGGATTATGCCAGTCGTATGCGCGAATATGTTAAACTACTTTTTACTGTTGTGATTCACAACGATTCCATTAAAGAGTTACTCAACAACTATCCAATTGATGAAGTTATTGAATACGTTTTAGGAAACGACGACgaagacgatgatgatgatgatgaggaCGATAATGCAAATGAATTGAAGGATAACAGTAAAGATAATGATAAAGAAATCGAGGATTCCATTTTAGAAACCATCAAAAGTGAAGATGAAGATTAA
- Protein Sequence
- MSLLKETEKSHARRSSSGIKILNDERVIAPLPLKIPTAHSKPKQIRLSIAEPKKGLKQKNMDHYVMKTVKEEKSTDNGIEESETIDFVLTENIEDDSPRPTGEITEELHLSEDEDHDSAFAPGQSDIVEHVCGKCYKTFRRLKSLKKHLDYCRFDSGYGDRKAEMIKNLEKIEKDAIMMENKDVCFCCGESYDTFHLGHISCPDCPKSFKTQMSYERHIFITHSEFDDYACSICNAKLRSANLLKLHEDQHRNRGKPFACKICGKDFTRSYHLSRHQKYSSCSGNENDTMHCKVCNKSFYRLDNLRSHLKQHLGTQQTKKSEYMCPICKKCFYSLSTLNIHTRTHTGEKPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPHVCNECGKSFIQGTQLRTHSKTHLRPYECEQCPEKFKTEKQLEKHMKEHSVKKRKGRMRLANKCDICKIGFKTELDFNKHMQIGRHYTPAQRRKLRNRTDCAVCREQFDSVQSLQFHILKVHQEDPETFLNEDPFDNTSHVEDVDAILMPTPKVIKIEDDQGEQIEFVTTNCDGKILNTNVQSLTKEETSSDSKDTSPNKVRILEQYIYDSPSTSLSAGSKQTIFLSNEAFTVIPLESAGGLIEPITTTTLPSNIISPELKKEQRKALGESLAAAIADRVENELNDSNEEPKYSEEECKIKDNVSKLLDMLVDSSTLKKFGWPGISEETVLCKVIENCGHDLSKDQYNYASWDYASRMREYVKLLFTVVIHNDSIKELLNNYPIDEVIEYVLGNDDEDDDDDDEDDNANELKDNSKDNDKEIEDSILETIKSEDED*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01074705;
- 90% Identity
- iTF_01398764; iTF_01399696; iTF_01074705;
- 80% Identity
- -