Tfer034453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999966.1:121569468-121577865[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.7 4.3e+02 3.0 5.7 2 23 179 200 178 200 0.94
2 16 0.0025 0.29 13.0 3.5 1 23 278 301 278 301 0.92
3 16 0.036 4.1 9.4 2.7 1 23 308 330 308 330 0.99
4 16 0.00072 0.083 14.7 0.4 2 20 392 410 391 413 0.95
5 16 0.00072 0.083 14.7 0.6 1 23 495 518 495 518 0.95
6 16 0.0017 0.19 13.6 1.5 2 22 526 546 525 546 0.94
7 16 0.00018 0.02 16.6 0.7 1 23 575 598 575 598 0.96
8 16 0.078 8.9 8.3 1.0 1 23 604 626 604 626 0.98
9 16 7.1e-05 0.0082 17.9 2.6 2 23 633 654 632 654 0.97
10 16 2.5e-05 0.0029 19.3 3.5 1 23 660 682 660 682 0.97
11 16 0.0013 0.14 14.0 0.4 1 22 688 709 688 712 0.90
12 16 0.0001 0.012 17.4 0.2 3 23 742 762 741 762 0.99
13 16 1e-05 0.0012 20.5 1.2 1 23 768 790 768 790 0.98
14 16 4.3e-07 4.9e-05 24.9 2.5 1 23 796 818 796 818 0.99
15 16 0.018 2.1 10.3 5.4 1 21 824 844 824 846 0.94
16 16 0.041 4.7 9.2 1.6 1 23 852 876 852 876 0.90

Sequence Information

Coding Sequence
ATGGAGTTTTATGTTCACGGATGTGAAGATTCGACACCTGATTGGGCGAGGATAGGAATAACAGGTCACATATTAATCTTAAATGAGACCAGTTTTAGTGATCTCAGGGATCCGCAATCCTTGCGTTCACGGACTACAAGGtcgttgaaattgattttaatagAAGACTGcACATCAACAAATGAAAGTTTAGACGATGATGGCAACGACAGTGATATCGAAAATATATCCAGcTACTCATCATCAAACGAGAGCTACAACGAAATTACCTCAAGaCACTCAGTACAAGTGATAGAGGGACAACAAGTTTCTCAAGATGGAGTAATCGAAAAAGTCAACAATAATAGTCGACAAGAGGGTACTACTGTTCGTATTGAAGAATTTATGTGGAACGAGGATTTTCTAGAGGACGTAATGAGCAAGGATCTTCTGGAGCCACCTAAATATATAATTGGCGATCCATACGatagaaaaatacaaattcTGTTATTTGGAAATCGTCTCTATAGTAAACCGACTAGTTGGCGCCTTGTGGAATGCAAATTGTGTTGTAGCACTTTTAAGACATGCAAACAATTGCGTGAGCACTTAGAAAACCATGATGATATAGACACACTTCACAACTTAAAATTGTCGGATAGCAATGTCAAGCATTTGTTTCCAAATATGACCAATTTGCAATCAATCAAGGAAAATATATGCGCAGATATTCACAAAAAACAGTGGTTTAAATACTATGCGGTGTTGAACGAACACTCTTATGAAATGTCCATTAGTGATACGGACGAAGATGAGTTGCAAGAAGAAGGGAATGAAGTGCGTGCCAACAAATATAAATGTTCATTCTGCACAAAAACGTTTTCGTTTAAGTACCAAGTGTTTACACATTTAACAGATGCTCATAGTAAGGAAGGAATACCTTTCAAATGTGGACGATGcaagttgaaatttatttctatgAAAATGTACTCGCAACACTTACAAACCCACTGCcataacaaacataaaaatttactttgtagtcAATGCCCGGCAAAATTCGTTTGGccacaaaatatgaaaaatcacaACTGTACCACGAAAAGACCAGCAACCTCTCCGGCCAATCCCGAAGATCAACTTGAATCTAATGTCATTAATACTGACTTTGTACCAACAACTATCAATGTGATGCGCTGCGCTCTTTGCCCAAAATCTTTTGAGAGATTAAGAGATTTGCGTCAACATATGCCTTTTCATGAAGATGGCAAAACTGACATTGATTTTCAGAATTCTCTTTATATAAAACAACTTGAATCTTCGAAAGCAACAATTAATTATGAAACAGTACAGCGACAAATCCAGAATGATTTtagaaaacgtcaaataagCAATTTCTTCCAAGCTATTGATAAGTATGGAAATGAAATAGAAATATCAGATTCTGAGTCAGATACTTGGTCGGATAATAATGGAGCTAATGGTAGAACGGTCGTATCAGAATACAAATGCGAAATTTGTAATGCAAATTATGAAAGACGAACATATTTATTAAAGCACCAAGAAGAACTCCACAAAAGCGAGGAAATGCCTCTTACTTGTTGGTATTGTGGTCATAAATTTGTTAGTATTCATCTGTtgcaaaagcatttaaaaaggGAATGTTGGAATCATGATATAAAGGCAGAATCTTCCGAAGTTGTAGATGTAGATAAATCAACAGTTGAACAGCAATCACCGAAATTCATTTGCTCCTTCTGTGGTGTATCATTTTCCAACAACTTAAACTTAACGTTACATAAGGAGACGCAACACTTGTGCGAGAAAATCTTCAAATGCAGGCTCTGCGCAATGTCATTTTTGAAGGCAACTGACTTACAATCTCACCGTCTAACACACCCTGGAGAACTTCCTCTTCAATGTATGTTTTGCGAAGAGTCGTTTGAacgaaaaattcatttaaaggtTCATCAACGTACACATGCTGGCCAAAGAGCGTTTAGCTGTAGTATATGTCAAAAATCATTCAAAAAACGTTACCAGCTGAAGAACCATTTTCTTATTCATTCACATGAAAAACCTTTCAAGTGTGACATTTGCGACAAAGCTTTTTTAAGTATCACATATCTGAGGAGACATCAGGTAACGATGGGACATACCGAGTTGTGGTGCTCAAGCTCAATGAATAATTCCAATCCTGATGATTTGAAAAATGACACAACGAACAGAAGGGATAGAATTTTATGTCCTATTTGCGGAACTGGTTTGTCTAGAAATACCAGCCTGTCCCAACACATTAAAACTCACACAGGCGACAGACCCCACAAGTGTGACCTTTGCGAAAGGGCATATATACGCAAATCTGATTTAGTAGCTCACCGCCGTACTCACACTGCTGAACGTCCATTCAAATGTCCGCATTGCGAAAAAGCTTTCCGGAAACGACAGGCATTAACGAAGCACATTCGCGTACACACAGGCGAGCGTCCTTACGAGTGCACATATTGTCATAAGACATTCAGTATATCGACTCGTTTGAACTTGCATGTGCGTTGTCATACTGGCGATAAACCCTTTAAGTGTGACGTTTGTGGTCGAGCTTATACGTGTGGCGCTTATCTAAAAAAACATCGAATCACAAAAGGTCATAAtgtggaaaaaaaatcaatttaa
Protein Sequence
MEFYVHGCEDSTPDWARIGITGHILILNETSFSDLRDPQSLRSRTTRSLKLILIEDCTSTNESLDDDGNDSDIENISSYSSSNESYNEITSRHSVQVIEGQQVSQDGVIEKVNNNSRQEGTTVRIEEFMWNEDFLEDVMSKDLLEPPKYIIGDPYDRKIQILLFGNRLYSKPTSWRLVECKLCCSTFKTCKQLREHLENHDDIDTLHNLKLSDSNVKHLFPNMTNLQSIKENICADIHKKQWFKYYAVLNEHSYEMSISDTDEDELQEEGNEVRANKYKCSFCTKTFSFKYQVFTHLTDAHSKEGIPFKCGRCKLKFISMKMYSQHLQTHCHNKHKNLLCSQCPAKFVWPQNMKNHNCTTKRPATSPANPEDQLESNVINTDFVPTTINVMRCALCPKSFERLRDLRQHMPFHEDGKTDIDFQNSLYIKQLESSKATINYETVQRQIQNDFRKRQISNFFQAIDKYGNEIEISDSESDTWSDNNGANGRTVVSEYKCEICNANYERRTYLLKHQEELHKSEEMPLTCWYCGHKFVSIHLLQKHLKRECWNHDIKAESSEVVDVDKSTVEQQSPKFICSFCGVSFSNNLNLTLHKETQHLCEKIFKCRLCAMSFLKATDLQSHRLTHPGELPLQCMFCEESFERKIHLKVHQRTHAGQRAFSCSICQKSFKKRYQLKNHFLIHSHEKPFKCDICDKAFLSITYLRRHQVTMGHTELWCSSSMNNSNPDDLKNDTTNRRDRILCPICGTGLSRNTSLSQHIKTHTGDRPHKCDLCERAYIRKSDLVAHRRTHTAERPFKCPHCEKAFRKRQALTKHIRVHTGERPYECTYCHKTFSISTRLNLHVRCHTGDKPFKCDVCGRAYTCGAYLKKHRITKGHNVEKKSI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01398757;
90% Identity
-
80% Identity
-