Tfer040873.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:101206559-101210622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.1 12 7.9 0.1 2 23 353 375 352 375 0.94 2 14 0.026 3 9.8 0.1 6 23 384 401 384 401 0.98 3 14 0.013 1.5 10.7 7.6 2 23 408 430 407 430 0.95 4 14 0.00032 0.037 15.8 1.1 3 23 437 457 436 457 0.98 5 14 1.2e-05 0.0013 20.4 3.7 2 23 465 487 464 487 0.95 6 14 0.57 66 5.6 0.8 3 23 493 512 491 512 0.91 7 14 2.4e-06 0.00027 22.5 2.2 2 23 521 543 520 543 0.96 8 14 0.00014 0.017 16.9 1.6 1 23 552 575 552 575 0.98 9 14 0.00026 0.03 16.1 0.6 2 23 582 603 582 603 0.98 10 14 0.16 18 7.4 0.5 1 22 609 630 609 630 0.92 11 14 0.00014 0.016 17.0 2.4 2 23 645 667 644 667 0.95 12 14 3.8e-06 0.00044 21.9 0.5 1 23 676 699 676 699 0.98 13 14 1.1e-05 0.0013 20.4 0.5 2 23 706 727 706 727 0.98 14 14 0.0054 0.62 12.0 1.3 1 22 733 754 733 754 0.96
Sequence Information
- Coding Sequence
- ATGAATTGCCTTTTGTGCTTAGAAGTAACtgaaagttataaggatttaatagtttttaactCCAGCTTATGGCAGGAACTAAACATGCAGTATATTATTGAAAAGCACCTTTGGAAATTGGAAGTTTTAAATAGTCAATCCTATATCTGCCAAGCGTGTTGGCAAGAATTATACAATTTCCAtaagttttacttaaaacttGAAAAAGCCCGctcaaatttaaatgatttattgAACGCTGAAGAAGTTACCAAAGAAGCTGTTGAAACAGGAAACGGAGAAAAATctaggaatatttttaattttattgcaaaagtaTCACTACCTGaacatgaaattttatttcttaaagagGAATATCctacaaatatttatgaaaaggAACAAGTTTTATTTCCTAAAGAGGAATATCatacagatatttttgaaaaggaagaagttttatttccaaaagaggaatatactacaaatatttttgaaaaggaTGATGAAGAAGAAGCAAGTTCTCTTAAATCTAAAAGCAGGCGTAAATGCTCTAGAAAGAAAAGTTCACAAGACAAAATAAACGAActaaaatccaatgaaaattcaGATGAAATTGGTACACATTTTAAAGTAGAAAGCATAGAAAACGACGACAAATCCGATGAAAATGGAGCTGAAATTGattcagaattaaaaattgtagAAAATGATGCTGAAGTCAACAAAGTAGAAGACACGAGTAGATTCTTTATTTGTCTTAAAAGCAGTAATAAACGTAAATGCTCTAGAAAGGAAAATACAaatgataacaaaattattacaagAAAAAGTTCGAGACAAAGATCCAACAATGACAAAAGTGATACTGAAATCAAAGAAtttcaatttgttaaaaattcagATGAAATTGACGAAAAGTTATAtgaaattgaaagaaaattagaattaaaaacaacaGAAGAAAGTGAcgctaaagaaaacaaaatggaAGGAGACGATCAGAATGATAGTTCCACAAAGTTAGATAAATTATCTAATGTAGACAAATTTGTAGCCGACAATTTTCAACTCAATTGTGACATCTGTAAAACCCCAATGGATACATTTTCCGCATTGATCAAACATTACAGAGAGATACACAATCAGCGTGGGTATGTTAAGTGCTGCGGTAATAAGTTTAAAACTCGTGTTGAATTAATCGATCATATTAATATCCACGAAAACCCCGAATATTTGAAATGCAAATACTGCACCAAAACGTTTGCTAAACGTACATGCCTGAAGCTGCATACAAAACATGTCCATGAAGAAAAGAGGGTGGATTGTGACGTTTGTGGCAAAAGTTTAGTAACTGAATTATGTCTGAAAAGGCACATGCTTACACATAACACTGCAGAGAAAATGTTATCTTGCAAACAATGCGGCAAATCCTATAAATCTAAACACTCCCTATACAACCACATGCGAGCTTTTCACTTgaataatataatttgccattTATGTGGCAAATCTATTGTAATATACGAATTCGCACGCCATATGGCACACCATGAAGGAAAACCTCTACCAAAGGTAAGCTGTGAAATGTGCGATCGCAAGTTTTCAGATAAGGGTTGTTTAAATCGTCACATGCGTGTGCAACATCCACCGGAAGGAGCTGTAACTGAATTTAGATGTGATAAGTGCCCAAAAGTGTTTGCAGCTGTTCATAGTCTTAAGACGCACACGAGAAAAGTGCACGATAACGCATATGTAAGAAAGTGTACGTTGTGTGATAAAACACTTAAAGGACCCGGCTCCCTAAGggAGCACATGTCAAGGCATAGGGGCGAACCCTTATACGTTTGCGGCGTTTGtcctagaaaattttattccgGTGCAAAAGTGCACACGCATCGCAAaacatgttctgaaaatcagcATGAAGGAAAACCTCTACCAAAGGTAAGCTGTAAAATGTGTGATCGCCAGTTTTCAGATAATACATGTTTAAATCGACATGTGCGTGCGCAACATCCACCGGAAGGAGCtaaaactgaatttaaatgtgaTAAGTGCCCTAAAGTGTTTGCAGCTGCTCATAGTCTTAAGACGCACATTAGAGTAGTGCACGATAATGCATATATAAGAAAGTGTACGTTGTGTGATAAAACATTCAAAGGACCCGGCGCTCTAAgggagCACATGTCAAGGCATAGGGGCGAACCCTTATACGTTTGCGGCTTTTGTCCTAGGAAATTTTATTCCAGTGGAAACGTGCACACGCATCGCAAAACATGTTCTGGAAATCTGAAAGAAAAATGTGTAACAGAACGAATGAAAGATGAATAA
- Protein Sequence
- MNCLLCLEVTESYKDLIVFNSSLWQELNMQYIIEKHLWKLEVLNSQSYICQACWQELYNFHKFYLKLEKARSNLNDLLNAEEVTKEAVETGNGEKSRNIFNFIAKVSLPEHEILFLKEEYPTNIYEKEQVLFPKEEYHTDIFEKEEVLFPKEEYTTNIFEKDDEEEASSLKSKSRRKCSRKKSSQDKINELKSNENSDEIGTHFKVESIENDDKSDENGAEIDSELKIVENDAEVNKVEDTSRFFICLKSSNKRKCSRKENTNDNKIITRKSSRQRSNNDKSDTEIKEFQFVKNSDEIDEKLYEIERKLELKTTEESDAKENKMEGDDQNDSSTKLDKLSNVDKFVADNFQLNCDICKTPMDTFSALIKHYREIHNQRGYVKCCGNKFKTRVELIDHINIHENPEYLKCKYCTKTFAKRTCLKLHTKHVHEEKRVDCDVCGKSLVTELCLKRHMLTHNTAEKMLSCKQCGKSYKSKHSLYNHMRAFHLNNIICHLCGKSIVIYEFARHMAHHEGKPLPKVSCEMCDRKFSDKGCLNRHMRVQHPPEGAVTEFRCDKCPKVFAAVHSLKTHTRKVHDNAYVRKCTLCDKTLKGPGSLREHMSRHRGEPLYVCGVCPRKFYSGAKVHTHRKTCSENQHEGKPLPKVSCKMCDRQFSDNTCLNRHVRAQHPPEGAKTEFKCDKCPKVFAAAHSLKTHIRVVHDNAYIRKCTLCDKTFKGPGALREHMSRHRGEPLYVCGFCPRKFYSSGNVHTHRKTCSGNLKEKCVTERMKDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397831;
- 90% Identity
- -
- 80% Identity
- -