Tfer027916.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
-
Assembly
GCA_905220375.1
Location
LR999966.1:4299876-4304119[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.021 2.4 10.1 1.4 5 23 190 208 189 208 0.95
2 15 0.0025 0.28 13.0 1.9 1 23 214 236 214 236 0.99
3 15 0.0003 0.035 15.9 4.0 1 23 292 314 292 314 0.98
4 15 1.2e-05 0.0014 20.3 0.3 1 23 414 436 414 436 0.96
5 15 0.049 5.7 8.9 2.9 1 23 442 465 442 465 0.91
6 15 3.6e-06 0.00042 21.9 0.3 1 23 482 504 482 504 0.98
7 15 0.00081 0.094 14.6 1.8 1 23 513 536 513 536 0.96
8 15 0.0035 0.4 12.6 4.4 1 23 542 564 542 564 0.98
9 15 1.3e-05 0.0015 20.2 0.5 2 23 569 590 569 590 0.98
10 15 2.6e-07 3e-05 25.5 0.4 1 23 596 618 596 618 0.96
11 15 4.6e-05 0.0052 18.5 1.3 1 23 624 646 624 646 0.99
12 15 4.2e-05 0.0049 18.6 1.1 1 23 652 674 652 674 0.96
13 15 9.1e-07 0.0001 23.8 2.6 1 23 680 702 680 702 0.99
14 15 1.5e-05 0.0018 20.0 0.3 1 23 708 730 708 730 0.99
15 15 5.8e-05 0.0067 18.2 0.5 1 23 736 758 736 758 0.97

Sequence Information

Coding Sequence
ATGTCTAACGACATGAAATCTAAATGCAGGACTTGCCTAAGCGAATCAAATGTTTACCATCAACTGTTTGATTATGTGgaagaaaactataaaatattggAGATGTTGGATGGTATAGTGCCCCAAATTGATATCAAGACTTCATCTCAATTTTCCACTTTAGTGTGTAAAATTTGTGTGGATAAATTGTTAGCTGGCTATAAGTTTCAACAATTGTGCATAGAAACTAATAATCGGCTGCATGATTTGTTGGGGATTGCCGTCTTTGAGGCGGAGCCGAAATTGGAAAGGATACTGGATCCCTTAATCGGCGAGACAAACCATAAGATGAAACAGGAAATAGAAGAAGATCCGTGTATTGAATGCGAAGTTCATCCCGATGATATAATGGAAGGAACGGGGTCGGACAAAAATAGCTCCGTTCCGGATGCTGGTACTTATACAGATTCAAGCAATGAAAAACTAAcagttttaatagaaaaatccGTCAAAAAAGCTAACGTTAagattgaaaattttgaaaaATTCCATAAACTAAATCGGCGTAAAGGTCACTTTCTTGGAACTGGATGTGGTAAACATTTTAGCAGCTTAAATCGGTTAAAACAACATACATCTATACATGATAAAAAGCGGTGGTACACATGCCAAATTTGTAATACTAgaataaagtttgaaaaaacttttaaagcTCATATGTTAACGCATACAAATGGAGAGAGTGATTCGAAAAATATAGCACAAATTAATGATGGTGTGTTAAATAACGACTCCAGGAAGAATTTTGAAACACAAGAGTTGTTGGATGAGGACCAAGTGAGTGATAAGAATGGAGAAGAAGATGTGTGCAAAGACTCAAAAGAAATGCTTACTTTTCAATGTCCGGACTGCTCGAAATGTTTTCAGAAAAAGGCTTCATTCTCTGTTCACAAAAAAGTACACAAGGTGAAAGaactacttaaaaataaaagccaATCTTTTGAACCAcgcttaaaaaatattgaggAGTCGAGCAAATTTCAGAATGAAAAAGCAAtagacaaaattttaaaaatcattgtcaaaaaagaaatagaaaaccCATCCCAATTATATGAAGGCGGCATAGATTATGAcaataacttgggaaataaattgtttgtcagAACCGAAGCTAAAGAAGGTAAAAATGTTGATTTCGTTGATACCGGCATAGGTGAGGTGGAAAAacccaacagcagcaacaaaagAAATGGTAATTTTCCCTGCGAAGAGTGCGGCAAGATATTCGATCGTGCTTCTCGCTTAAAGCGACACTCTTCGGTGCATTCTCTTGCAAGACCACACGAATGTGAAATCTGTAAATATCGATTTTCCACTGCCAATATCTTAAAAGCTCATCATTTGTTTCAACATACAAATGAAGCAGGAGGGAATTTCCATTCTCGATCTCGACCCGAAGGTTATAAGTGTCCCGATTGCCCTAGGCGTTTTGAAAAACAAGCCTCACTCTCGGCTCATCGTCAAATTCACACACGCAATTCTTCAGAATCCAATTATCCCTGTATGGTATGCCAGCGAAGTTTCACGACATTAAGGTATTTCACGGAACACATCACAAAAAAACATCCTGAAGTAGAAAAACACAAATGTGATCTCTGCgagaaaacttttattttacatgCCCATTTGGTTGAACATTTAAATCGTCATAAAGGCAACAGACAATGTTTAATATGTGAAAAAGAATTTGGAAATAACAAAGAACTGAATGAACATATGCGCACACATAGTGGCGAGAGTCCTTACCTTTGCCCCCAGTGCGGTAAAACATTTCGGAGTGCGAATAATTTACAGCAACATATAGAAAGGCATACAggtttaaaaaagtaccaatGTACAGAGTGTCCCAGTCGTTTTAACGTTAGATCGGATTTGACAAAACACACATCAACACATTCGAATGCAAAACCTCATATCTGCGACATTTGCGGCTCTCGCTTCACCAGAGCATATTCCTTGCAAAAGCACAAGATTATACATACGGGAGAAAGACCATTCAAGTGTGATCAATGTAATATGACtTTTGCGAGAATTTACTATTTACGGCGTCACATGCGAACCCACACAGGAGAGAAACCCTACAAATGCAAATATTGTGAAGCTGCTTATGCAGAAAACGGGGATTTAACTAAACATTTAAGAACACATGTTGGcgaaaatacatatatgtgcgATCAATGTCCAATGGCATTTAAATATCAAGCTGAATTAAAACAACATCAATCGCAGCATTACAAAATGGCACAAAAACTGTTACTGCAAACACAAAAGCTGTCCGATGAAGCGCGAGATGAAATAACCGAACAAGATCAACAGAATATGGAACAGCAATTACAATTTCCAGTACGAGAACAGCAACAACATAATCAACAACCATTGAAGCCTGAACAAATGCAACATTTGGTTGTAGGGATTCCGGGGGATCAGCAAATACCGTTAGTAGGCCACCGGCAACAATTATCGGCAATAGTGGAACAAACTGATAATAAAGCGAAAATTGAAGATATTGTCATAACCCGTCAACAAGACAGTTAA
Protein Sequence
MSNDMKSKCRTCLSESNVYHQLFDYVEENYKILEMLDGIVPQIDIKTSSQFSTLVCKICVDKLLAGYKFQQLCIETNNRLHDLLGIAVFEAEPKLERILDPLIGETNHKMKQEIEEDPCIECEVHPDDIMEGTGSDKNSSVPDAGTYTDSSNEKLTVLIEKSVKKANVKIENFEKFHKLNRRKGHFLGTGCGKHFSSLNRLKQHTSIHDKKRWYTCQICNTRIKFEKTFKAHMLTHTNGESDSKNIAQINDGVLNNDSRKNFETQELLDEDQVSDKNGEEDVCKDSKEMLTFQCPDCSKCFQKKASFSVHKKVHKVKELLKNKSQSFEPRLKNIEESSKFQNEKAIDKILKIIVKKEIENPSQLYEGGIDYDNNLGNKLFVRTEAKEGKNVDFVDTGIGEVEKPNSSNKRNGNFPCEECGKIFDRASRLKRHSSVHSLARPHECEICKYRFSTANILKAHHLFQHTNEAGGNFHSRSRPEGYKCPDCPRRFEKQASLSAHRQIHTRNSSESNYPCMVCQRSFTTLRYFTEHITKKHPEVEKHKCDLCEKTFILHAHLVEHLNRHKGNRQCLICEKEFGNNKELNEHMRTHSGESPYLCPQCGKTFRSANNLQQHIERHTGLKKYQCTECPSRFNVRSDLTKHTSTHSNAKPHICDICGSRFTRAYSLQKHKIIHTGERPFKCDQCNMTFARIYYLRRHMRTHTGEKPYKCKYCEAAYAENGDLTKHLRTHVGENTYMCDQCPMAFKYQAELKQHQSQHYKMAQKLLLQTQKLSDEARDEITEQDQQNMEQQLQFPVREQQQHNQQPLKPEQMQHLVVGIPGDQQIPLVGHRQQLSAIVEQTDNKAKIEDIVITRQQDS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397720;
90% Identity
-
80% Identity
-