Tfer040875.1
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:101223127-101234966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.35 40 6.3 0.1 6 23 398 415 398 415 0.97 2 19 0.00048 0.055 15.3 2.5 1 23 421 444 421 444 0.96 3 19 2.6e-05 0.003 19.3 0.8 2 23 450 471 449 471 0.96 4 19 1e-06 0.00012 23.7 1.7 2 23 477 499 476 499 0.96 5 19 0.1 12 7.9 0.0 3 23 505 524 503 524 0.95 6 19 0.0015 0.17 13.7 3.7 2 23 533 555 532 555 0.93 7 19 9.3e-06 0.0011 20.7 0.3 1 23 564 587 564 587 0.97 8 19 0.0037 0.43 12.5 0.3 2 23 594 615 594 615 0.97 9 19 0.00078 0.089 14.6 2.3 1 22 621 642 621 642 0.96 10 19 3.5 4.1e+02 3.1 0.0 3 23 870 891 868 891 0.93 11 19 0.5 58 5.8 1.1 6 23 900 917 900 917 0.97 12 19 2e-05 0.0023 19.6 1.6 1 23 923 946 923 946 0.96 13 19 1e-06 0.00011 23.7 0.6 2 23 952 973 951 973 0.97 14 19 1.3e-06 0.00015 23.3 0.4 2 23 979 1001 978 1001 0.96 15 19 0.34 39 6.3 0.1 3 23 1007 1026 1005 1026 0.90 16 19 2e-05 0.0023 19.6 2.2 2 23 1035 1057 1034 1057 0.95 17 19 4.9e-06 0.00057 21.5 0.2 1 23 1066 1089 1066 1089 0.97 18 19 0.1 12 8.0 0.1 3 23 1097 1117 1096 1117 0.92 19 19 0.016 1.8 10.5 0.7 1 22 1123 1144 1123 1144 0.96
Sequence Information
- Coding Sequence
- atgaattgCCTTTTGTGCTTAGAAGgaactgaaaattataaaaatttgatagTTTTTAATTCCAGCGAATGGCAGGAACTAAACATGCAGTATATTATTGAAAAGCATCTTTGGAAATTGGAGGTTTTAAATAGTCAATCCTATATATGTCAAGCGTGTTGGAAAGAATTGTACAACTTCCAtaagttttacttaaaacttGAAAAAGCCCGctcaaatttaaatgatttattaaaGAGTAAGGAAGTTACCAAAGAAGCTGTTGAAACCAGAAACGAAGAAGAAGCTgagaaaatttgtaatattgcAAAAGTATCACAACCTGAacctgaaattttattttttagagatGAATATCctacagatatttttgaaacggAAGATGAAGAGGAAGTAAGTTATCTTAAAACTAATAGCCAGCCTAAATGCTCTGAAAAGGAAAGTTTACATGACAAAGAAATTGTAGAAAATAGTTCGGGGAAAACAACATCCAACAAAGAACAAAGTAATAGTGAAATAAACGAACTAAAATCCAGTGAAATTACAGATGAAATTAAATCAAAAGTTGCAGTAGAAGGAATAGAAAACGACAAGTGCAATGAAAATGCAGCTAAAATTgatttagaattaaaaataattgagaatGATGATGAAGgcaacaaaatggaaaatggtGAAGCACCTATTTGTCCTAAAAGACAAACTAAGCGTAAATACTCTAGAAAGAAAAGTACAaatgataacaaaattattacaagAAAAAGTTCGAGGCAGAGATCCAGCAAAGACAAaagtaaaaatgaaattgaaatagAAAAACTGAAATCCGATAAAAGTCCAAATGAAATTAACAAACTGTTAGAAGTTGAAAGAATAGAGAAAAACGCTAAAGAAAACAGTATGAAATTTGATGAAAATATAGAtgaattagaattaaaaacaacagaaaatgaagctaaacaaaacaaaatgaaagaaGATGATCAGAATGATAGTTCCAGAAACGACGATGCTGTAACTTCCTCCAATGCGGCTGATTCAGGCAAGCCACATAAATTATCGGTTAAAGACAAACTCATagcaaaaaatgttaaaatcactTGTGACATTTGTAAAATCCCACAAGATACATTTGCAGCAGTGATTAAACATTACAAAGAAATACACAATGAGCGTGGATATGTTAAGTGCTGCGGCAATAAGTTTGCGAATCGTTTTGAATTAATAGATCATATCAACTTTCACAAAAATCCTGAagattttaaatgcaaacattGTGAAAAAGTATTTCATAAAATCGCAGCGCTAAAAGTCCATATAAAGGAAGTTCATGAGGCACAGGTTTCTGAATGTGACATTTGTGGCAAAAGTTATACAAATGAAAGGGGTctaaaaaaacacaagaaattGCACAAAACTGAAGATATATCTTGTGAAAAATGTGGTAAATCCTATTCATCTAAATACTCCCTACACAATCACATGCGAGTTATTcacttaaaaaatgtaatttgcgATTTATGTGGCAAATCTGTTATACTACCCGAATTAAAACGTCATATGGCACGGCATGAAGGAAAAAAACCACCGAGGTTAAGCTGTAAAATTTGCGATCGCCAGTTTGCACATAGGTGTGGTTTAAATCGACACATACAAGACAAACATCCACCGAAAGGAGCtaaaactgaatttaaatgtaccaAGTGCCCAAAAGTGTTTCCAGCTGCTTCTAGTCTGAAGGCGCACACAAGACAAGTCCACGAAACTGCATTAGTAAGAAAGTGTGTATTGTGTGATAAAACAGTCAAAGGATCCGTCGCCCTAAGagagCATATGTCAAGGCATAAGGGTGAACCCTTATACAGTTGCAGCGTTTGttctaaacaattttattcCAATGCCAACTTGCACACGCATCGCAAAACATGTTCTGGAAATCGAAAAGAAAAACGTGAAGTTTTAAATAGTCAATCCTACATATGTCAAGCTTGTTGGCAAGAAATATACAACTTCCATAACTTTTATTCAAAACTTGAAAAAGTCCGttcaaatttaaatgatttattgAAAACTGAAGAAGTTACCAAAGAAGCTGTTGAAACAGGAAACCAAGAACCTGAACTggaaatgttaatttttaaagaggAATATTCTATAGATATATTTGAAAAGGAATATGAGGAGGAAGCAAATTATCTTAAAACTATTAGCATGCGTAAATGCactagaaagaaaaataaaaatgataacaaaattattgcaaaaaaaagttcaaagaaAAGATCCAACAAAGCACAAAGTAATACTGAAATAAATGAACTAAAATCCATTCAAAATCCAGATGAAATTGACATAAAGTTAGAAGTTGAAAGAatagaaaaaaacgctaaagaaAACGGAGTGAAATTCGATGAAAATGTAATAATTAAAACAGAATTAGAATTCAAAACAACAGAAAATGACgctaaacaaatcaaaatagaAGAAGACGATCAGAGTGATAGTTCCACAAATGACGATGATACTTCCTCCGATGAGGCTAATTcagatcaattaaataaattatcggATGAAGACAAATTCATagctgaaaattttcaaatcgctTGTGCCATTTGTAAAATCCCACTGGATACATTTTCCGCAATGCTCAAGCATTACAAAGACGTACACAATCAGCGCGGGCATGTTTCTTGttgtaattttaagttttaccgGCGTTTTGAATTAATGGATCATATCAAGTTTCACCAAAATCCTGAagattttaaatgcaaacactGTGACAAGGTATTCCCTAAACGCGCAGGGCTAAAGAGTCATGTAGAGAAAGTTCATGAGGCAGAGGTTGTTGAATGTGACATTTGTggcaaaagttataaaaatagaaGGAGTCTAAAAGTACACATGAAACTACACAAAACTGAAGATATATCTTGTGAAAAATGTGGTAAATCCTATTCATCTAAATACTCACTAGACAATCACATGCGAGTTGTGCACATTACAAATATAATTTGCCATTTATGTGGCAAATCAGTTATAATACCCGACTTAAAACGTCATATGGCAGGGCATGAAGAAACAGCTCCACCAAAGGTAAGCTGTAAAATTTGTGATCGCGAGTTTTCATTTAGGAGTTGTTTAATTCGTCACATGCGTGCGCAACATCCACCGAAAGGAGCTAAAACTGAATTCAAATGTGCTGAGTGCCCAAAAGTGTTTGCAGCTAATTATAATCTTAAGACGCACATAAGACAAGTGCACGAAAATGCATATGAAAGAAAGTGCATATTGTGTGGTAAAATTGTCAAAGGATCCGTCGCCCTAAgggaGCACATGTCAAGGCATAAGGGCGAACCCTTATACGTTTGCGGCTTTTGTCCTAGACAATTTTATGCCAGTGGAAACCTGCACTCGCATCGCAAAACATGTTCTagaaaacgaaaagaaaaatgtgtaaCAAAAAGAACGGAAGATGAATAA
- Protein Sequence
- MNCLLCLEGTENYKNLIVFNSSEWQELNMQYIIEKHLWKLEVLNSQSYICQACWKELYNFHKFYLKLEKARSNLNDLLKSKEVTKEAVETRNEEEAEKICNIAKVSQPEPEILFFRDEYPTDIFETEDEEEVSYLKTNSQPKCSEKESLHDKEIVENSSGKTTSNKEQSNSEINELKSSEITDEIKSKVAVEGIENDKCNENAAKIDLELKIIENDDEGNKMENGEAPICPKRQTKRKYSRKKSTNDNKIITRKSSRQRSSKDKSKNEIEIEKLKSDKSPNEINKLLEVERIEKNAKENSMKFDENIDELELKTTENEAKQNKMKEDDQNDSSRNDDAVTSSNAADSGKPHKLSVKDKLIAKNVKITCDICKIPQDTFAAVIKHYKEIHNERGYVKCCGNKFANRFELIDHINFHKNPEDFKCKHCEKVFHKIAALKVHIKEVHEAQVSECDICGKSYTNERGLKKHKKLHKTEDISCEKCGKSYSSKYSLHNHMRVIHLKNVICDLCGKSVILPELKRHMARHEGKKPPRLSCKICDRQFAHRCGLNRHIQDKHPPKGAKTEFKCTKCPKVFPAASSLKAHTRQVHETALVRKCVLCDKTVKGSVALREHMSRHKGEPLYSCSVCSKQFYSNANLHTHRKTCSGNRKEKREVLNSQSYICQACWQEIYNFHNFYSKLEKVRSNLNDLLKTEEVTKEAVETGNQEPELEMLIFKEEYSIDIFEKEYEEEANYLKTISMRKCTRKKNKNDNKIIAKKSSKKRSNKAQSNTEINELKSIQNPDEIDIKLEVERIEKNAKENGVKFDENVIIKTELEFKTTENDAKQIKIEEDDQSDSSTNDDDTSSDEANSDQLNKLSDEDKFIAENFQIACAICKIPLDTFSAMLKHYKDVHNQRGHVSCCNFKFYRRFELMDHIKFHQNPEDFKCKHCDKVFPKRAGLKSHVEKVHEAEVVECDICGKSYKNRRSLKVHMKLHKTEDISCEKCGKSYSSKYSLDNHMRVVHITNIICHLCGKSVIIPDLKRHMAGHEETAPPKVSCKICDREFSFRSCLIRHMRAQHPPKGAKTEFKCAECPKVFAANYNLKTHIRQVHENAYERKCILCGKIVKGSVALREHMSRHKGEPLYVCGFCPRQFYASGNLHSHRKTCSRKRKEKCVTKRTEDE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -