Tfer038778.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tachina fera
Gene Symbol
Smc2
Assembly
GCA_905220375.1
Location
LR999967.1:62267849-62271672[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-10 7.9e-07 30.0 0.0 2 40 199 237 198 240 0.92

Sequence Information

Coding Sequence
ATGTACATAAAGTCAGTGATAATAGATGGTTTCAAGTCGTATGGCAGGCGAACGGAAATCCATGGTTTTGATCCCGAGTTCACCGCAATAACGGGTTTGAATGGAACAGGGAAGTCGAACATATTAGACTCTATATGTTTTGTTTTGGGCATAATGAATTTAGGTCAAGTGAGAGCAACATCCCTTCAAGATTTGGTATATAAAAGCGGACAAGCCGGAATTACCAAGGCAACTGTTACGTTGATATTCGACAATACCAGCCCTGCCCAATGCCCATTGGGATATGAAAAATGTAGGGAAATATCGGTGACAAGGCAAATTGTTGTTGGcggcaaaaataaatatttaataaacggaaaattagttcaaaataaaaaagtttcagaCTTTTTTTGCTCAGTGCAGCTAAATGTAAATAATCCAAATTTCCTTATAATGCAGGGACGCATTACGAAAGTTTTAAACATGAAACCACAAGagGACATAAATGTTCTAAAGTCGGCAGCAAACTTGTTTTCCTACATTGAAATAACTGGGAATCCCAAAACAGGATGCAATTTAAGATTCGGAAAAAGACCGCTGCACCAATATTCCGAAGAGTCGATGAAAAGTGCTCCAAATGATATTAGAAAAGGCACAACTTCTATCTCTGCTGCAAGTAAAAAATATGGTGTCCCGCGTACTACTATACAAGATAGAATACATGGCCGTATTGCTGATGATGCTAGAAAAATGGGTCCACAAACAGTTTTAACTGATGCGGAAGAGCAACGTCTGGCAAAATGGTGTGGAGATCTTGCAAAACGTGGGTTTCCATTAAAACCTCAAGACTTGTTGAATACTGTCCAAGCAATTGTAAAAGAGGATCAACGAACCACACCATTTGTAAATGGTAAACCGGGGAGGAAATGGTATTTGGGCTTTTTGAAACGGCATCCTAGCATATGTCTCAGAGAAGCGGAAGGTATTTCCAAAGGGCGAGCGGTGATAACTCAAGAATTCATAAGAAAATGGTTCAAAGAACTAAAAAACTTTCTTAGTGAAGAAAATGCTTTGGAAATTTTAGACGATCCTTCTCGAATCTTTAATGGAGATGAGACCAGCTTTAGTATGTGCCCTAAAACAGGAAAAGTATTAGCCCCAAAaggatataaaaatgtttataccaTTCAAAAGGGAAACGAGAAAGAAACCATTACGGTGCTGTTGGTTTTCTCCGCAAGTGGCCAGACAGTGGTCCCAATGGTTGTATTTCCATACGTTCGTCCACCTAAAGAAGTCGTAAATAGCCTTCCAGAGAATTGGTTTTTGGGTAAGTCGGAAACCGGATGGATGGTGAGCGAAACGTTTTATGAGTATATCGTCAATGGGGTTCATAGTTGGCTTAATGAACACAATGTTCAGCGACCAATTCTGTTATTTGTGGATGGTCATAAATCTCATATGACGTTGGAGTTGAGTAAATTTTGCGAGAACAATGGTATTATATTATATGCACTTCCTCCAAACACCACACACATTATGCAACCTGCAGATGTGAGTGTTTTTAAACCGTTGAAATCAGAGTGGAAGAAAACTGTAAGGGAATGGCAGATGAAACAGGAAAATAAGTTATTGGTCGGTGGTCGAGATGAAATTACAACATTTGAGGCAACAGATTTTGATAAAGCTATcgaaattattaacaaaatagCTCCTAAATTGCGAGAACGGGGTGTTAATTCTGATATTATTGTTGAAGAAATCTGTAACTTGAAACAAACAGGAAATGATCAAACGGTTGAAATTTTAGGTGATGTCACTATACAGTCGGGAACGTATGTAATAAATGAAGAAGGGATTTTGGAAATGCAGACAAACATAAAAGAACCAAAATTATCATCCGAACATGTTCACTGTTTGTCTCCAACAAATTCCAAAGATGATTTGTTTGCACCTAACCATAGCTCAAGTCCAGTCCCAGTCACAATTCCAGATAACATCCAGCCATTTGAATCGATTACTGACTGTCTCTCCCCTACCTCATCAATTAGTAGCACTATAAACAACGTCTTGAAGTCCATTAGCTATTCTCCAAGTACAGGCACTTCTATAATTAAAAACGAAGCAATTTCCATGTCACCTACATTCGAAAAACACTTGTTTTAtccaaaattgtcaaaatcttCTAGATTCGCTATAAGGCCCAAGGCTCCAAGTGCAATATCTGCTCTAGCATGGAGGAACCATATAGAGGCAAAAGAAAACGAGAAAATAGccaaagctgaaggtataaagtCAAGAAAACTTGAacgccaaaaaagaaaaatggcaAATGAAAACAAGCCAAAGAAAGTTAAAATAGGAAAGAGAAAACAAATTTGTAGCACATGCGAAGAAGACTTGGATACAGATGCTGAGGACAACGGTCTAAAAAACGTAGGATGCGATAATTGTCCTCAGTGGTTTCACCTCAAATGCACTATTTTAAAAGAACTATCCTACGAAGACGCTATCGGAAAAGATTTTGTATGTGAAGCATGTAAAACAAAATGA
Protein Sequence
MYIKSVIIDGFKSYGRRTEIHGFDPEFTAITGLNGTGKSNILDSICFVLGIMNLGQVRATSLQDLVYKSGQAGITKATVTLIFDNTSPAQCPLGYEKCREISVTRQIVVGGKNKYLINGKLVQNKKVSDFFCSVQLNVNNPNFLIMQGRITKVLNMKPQEDINVLKSAANLFSYIEITGNPKTGCNLRFGKRPLHQYSEESMKSAPNDIRKGTTSISAASKKYGVPRTTIQDRIHGRIADDARKMGPQTVLTDAEEQRLAKWCGDLAKRGFPLKPQDLLNTVQAIVKEDQRTTPFVNGKPGRKWYLGFLKRHPSICLREAEGISKGRAVITQEFIRKWFKELKNFLSEENALEILDDPSRIFNGDETSFSMCPKTGKVLAPKGYKNVYTIQKGNEKETITVLLVFSASGQTVVPMVVFPYVRPPKEVVNSLPENWFLGKSETGWMVSETFYEYIVNGVHSWLNEHNVQRPILLFVDGHKSHMTLELSKFCENNGIILYALPPNTTHIMQPADVSVFKPLKSEWKKTVREWQMKQENKLLVGGRDEITTFEATDFDKAIEIINKIAPKLRERGVNSDIIVEEICNLKQTGNDQTVEILGDVTIQSGTYVINEEGILEMQTNIKEPKLSSEHVHCLSPTNSKDDLFAPNHSSSPVPVTIPDNIQPFESITDCLSPTSSISSTINNVLKSISYSPSTGTSIIKNEAISMSPTFEKHLFYPKLSKSSRFAIRPKAPSAISALAWRNHIEAKENEKIAKAEGIKSRKLERQKRKMANENKPKKVKIGKRKQICSTCEEDLDTDAEDNGLKNVGCDNCPQWFHLKCTILKELSYEDAIGKDFVCEACKTK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-