Basic Information

Insect: Syrphus vitripennis
Gene Symbol: Znf541
Assembly: GCA_958431115.1
Location: OY288108.1:4084547-4095451[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 6.6e-05 0.01 17.3 0.2 2 23 205 226 204 226 0.97

2 6 1.7e-06 0.00026 22.3 1.5 1 23 232 254 232 254 0.99

3 6 0.0001 0.015 16.7 2.6 1 23 260 284 260 285 0.95

4 6 0.0005 0.075 14.6 0.8 2 23 534 555 533 555 0.97

5 6 0.0041 0.61 11.7 0.7 1 23 1548 1572 1548 1572 0.95

6 6 0.00016 0.024 16.1 0.8 1 23 1606 1628 1606 1628 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	6.6e-05	0.01	17.3	0.2	2	23	205	226	204	226	0.97
2	6	1.7e-06	0.00026	22.3	1.5	1	23	232	254	232	254	0.99
3	6	0.0001	0.015	16.7	2.6	1	23	260	284	260	285	0.95
4	6	0.0005	0.075	14.6	0.8	2	23	534	555	533	555	0.97
5	6	0.0041	0.61	11.7	0.7	1	23	1548	1572	1548	1572	0.95
6	6	0.00016	0.024	16.1	0.8	1	23	1606	1628	1606	1628	0.98

Sequence Information

Coding Sequence: ATGTGTAGTGCCTCTATGGGTGCAGAAGGTTCAGTTACATTGCAATTAAGAGAAGCTATTCATTCGTCAGATTCCTCATCAGTCGATGGTTATTCATCTCTAGACAATGCCCTCACAATTGGTTATCCCGATCCGGACATGCTAGCCGATGTTCTAGGTTCGCTACAAACGGCATCCCTTAATAATAACTCAAATAGTAATAACACAATGATTAGTGCCATTACTTTGGATAATGTGGATGGTAGCAAACTCAATGATATCAGTTCAGCAATCAGCAGCAACCcaaccaacaacaataataacaataacaatggTGGCAAGAGCAATAgcagcaacatcaacaacaacagtaaGACCTTCAATAATAACAGCCTTATTAGCTGTAGCAGTAATATATCGCTGAACAGTCCGATTAGTGGACAAATAATCAGCATTACCGGTAGTAGTAGTGGAAGCAGTGGCAGTAGCAGTAATTGTAGTACAACCAGTAATAGCAGTTGTAGTAGTAGCAGTAATGAGAGTATATCAAATGTATCAGTTCCTGGATCTAATCCACCGATTGTAAAGAAACAAAGACCCAAAACATCATCCCCCACACGACATGGACCTCAACAATGTcagGTTTGCAGTAAAGTATTCGGAAATGCATCTGCCTTGGCCAAGCACAAATTAACGCATAGCGATGAGAGGAAGTATGTCTGTGTGATGTGTTCAAAAGCGTTCAAAAGACAGGACCATTTaaaTGGTCATATGATGACTCATAGAAATAAGAAACCATACGAATGCAAGGCTGAAGGTTGTGGCAAATCTTACTGTGACGCAAGATCATTGAGACGACACACCGAAAATCACCATAGTGGACTAGCAGCAGCTGCAACCACCCCTCAAAATCAATCATCATCCCTGTCGCCGTCAACAGGACCGCCAACAGGGCTAAGTTTGTCACCAGCAACTGCCAGTGgagaCGCAAGTTCACCTCACGGAGCAAACTGTATTCAGTATACAACTATGGGAGGCGACGATGGTAGTGGCAGCAATAGTAACAGCTCAATTAAACAATCCTCATCCGCTGTGAATGTGTCAGTTGTGTCATCTTCGACACAAGCCAGCTCATCTTCACAATGTTATTCAGTGACGTCTTCACCTGCTTCTTCACCTTCGTCAAATGCTTCAATAAAATCAGTTGTTTCTGGTGATGGACTCACTCGGCAGCAACTAGATCTCATTAGCCAAATTATGCAGCAAACGAAGCAGGGCACCACCCAGTTAACAGTCGGATCGACGActgcaaatttgaaaattacaaatCAACCACCGTCACCCCATCAAAGCCAGGTCCAAAGTAATCAGCAGCATCAGTTGCAGAGACCAAGGACATGGAATATGCAGACCCAATTGCAGCAGACACAATCAAAAGTATCGGTTATAGAAAATTCCACATCACCAATGACATCCATCTCCATAAATGAATTACTTAACGGAAGTGGTCCCCATCAGCAGCAAcaccatcagcaacaacaacaacaacaaaatctatcAAGTGCTGCCGcaataaatcaacaaattttaaatattgtaaaaatagaacaaaaaccTGTAGAGTGCAATCTATGTCATAGAAAATTTAAGAACGTTCCAGCCCTCAATGGACACATGCGTTTGCATGGTGGTTACTTTAAGAAAGAGGCCGAAACAAAGAAATGCGATCGAAAAGATGGCCTTGGGGGACCACCGCTTCAAACGGCAAGTATAGGGGTGAGAGCTTTGATTGAAGAGAAAATTATCAGTAAGCGATGTAAGGATTTGAAGGGTGCCTTTGTAGTTCCTGCCCCACCCATAACAGCTGCAATTAGACGAACAGCAAGTGACCTGGAAAACTTTTTAACCCCTAAGTCACCTATAGTACACCAATCAGGAAGCTCCCCATCTGATCGGAATAACAGTCTACCAGATATTGGTAATGCTGTCCTTCCATCGGGTCtgcaaattcaaaaacaaacaataccaATAACCCAAAAGCCATCAAATGTTAGTGTAGGAACGGCAACTGTATCAACAAACACTTCCAAAGCTACGTCTACCATGGATCACAAAGATGCAACCTTAATTGAGCTCCTAAAACGTGGCACCAAAGTGGCAGTGAGAAAAACATCGAATTCTGATTCCAGCCAGATATTCACCACTAGCAGTGGAACCCTAATGCTGCCTTCTGAACTGTCACTTTCCACCAACAACTCGGGCAGCACATCCAATAACCCACCACTCGCAATAACACTTCcaaatggagaaacaactccTGTCTCACTCACCATATCCCAGGCTCCCAACGGATCGGGTGACGTATACACGCTTACCTATTCCACAGATTCAGCAGCGTCCTTTTTTGAGGACAGTGATGTCTATAGTGTATCGGAGACTGACATGCTTCTACAAACAGTCGATTCGATACAGTTGCTCAACGAACCGGAAGAACCGGATCACTTAGATGAAATAAATTCACTTGCTGACTTCCACAATGACACCAGCACCAGTTCTTCTTCCAACCTTGTTGTTAATAGAAATAGCAAGGACATGCAAACAGTGTTTAGTTCCCCATTGCAAGATGCATTGCCCGACTTTCAAACTCTTCATTCCAAGGATTTTGTCCTGTACAACAATGGCACATGTAAGGCTATCACTAGTGGCGGCAACCACACCACCGCATCAAAGTCACTAGCCACTGTGATCAAACAGTCAATATCTCCACTTCCCTCGCCGCTGGCATATCCTACCCCACCAGCAAGCCACGAGACGGTAGCACAAGCTTCGCCATTCCTTGATGATTCCCACCACTTTTCGGATGCAGCGAATTCCTTCTTCCAGGAGAAGTCCACATCTGACTTCATTGATGATGCCGGGGTAACCTTCTTCAAAGACTGTTCCAACGATGCCCTCACTGAAAGTCAGAAAATCCTCAAACTCAAGAGTGTCCTCGAAGACAGTGGACAGTTCTTCAAGTCTGGCGATGATAATTCGAACGATGTTTTTGACACCTCCGTGGTTAAGGTGGAAGACCTGCTAAATGAATCCAGTGATGGGGCAAACTGTGATCTTAAAGACTTTGCTGAGCAAAATCTGGCCTTTTTAGAAGATGCTCAAGGATTCCTCGATGATTCCCGCAATGCCACTTCTCCGTTGTCGGAGTCGTTTTTCACCAGCGGCATTGGTACGGCCGAGGAAGTCAAAGAAGTCCTACGTGATGTTCTTCCCGATGAATCTCTGAATTGTGACCCGCAAAATTCAACCGACATTGACTTGTACTACTTGCCAGGCTTAGGTCTTCAATCCCAGATGATGCCAAACTCCGAAGATCCATTATTGTCATCTTCACCCAGGGATTTTGGACACAGATTGAGTGTTCAATCACATCATCAGCAAACGCAGATGATACGCATGGAACAACCACAGGCATCATCAACGATGCAAGCACAATTGCTCTCCAAAAAACCAGACCCAGATGCAAGTTTCCCCCTATTGATGGCTACAAGTACGTCCAAAGATGGAAGCACTGAGTTCCATTTCACAATTCAGCAGCCAGAAATAAAGCAAGACAACGAAACAGATATCAAGCCAGATATATCGACAGGCCAGATGTGTGTGGACAATCAGCTAGCAGCAGCACCACAACTGCCACCCCCACCGTTCAAAGACACTTCCACGGCGGCTCCAGTAAAGACGCAACAATTCTTTGCAGCAAATGAGATCGCACCTGCCCAACAAAGTCACCACCAACCGCAGCAAAACATTCTAGCGGCAGCTGCAACTGCTTCTCCTCTGACAAGTTCAATATTGAAGAGGCGATTACGTCAAGGATCCATGTGTGGTGACACTAATTCCCATTCAACTAGTATTCCTCGTAAATATGAGCTTTACAAATCGAAACTACGAAAACCATCAACCACTCACTACACTCCCCAACCAATACTAAATCCCGGCAGAAAGGGTACCGGTTTGTATTCCAATCTACCCAAACCACCCACCTTTGCCCAGGATACCTTGCATTTGGATGATGAATTCGAAGAGGCTGCCAGTATAATGGCTTTCCTTGATGAATCGAAAGTGAACATTGGTACAGCATATCAAGCAACTATTCCGGCTTTAGAAACGACAAATGAGCTGCAATCTTTGTTGGTAGTTCGTGGTGGTCGTGGGCAAATATCGGTGGTTACAGATCGTGAGGAAATGATGTGGGATCCCAGTGTGGCAACAGATGAGAAGATTCTAACGAGGTACATTGAGCTGAGCAAATCTTCAGCCATTCCACTTGGTTATCATTCGGAAGAAGTTGCCCTTAAAGCGTTGCTTCAAGTCAATGGTGATACACCAATAGCTGTGTTGAATCTTCTTAAGTCGCAATCGAATCCCTTCCAGCTTAAATGGTCATCGCTGGAAGTCGAAATGTTCCTCAGAGGTCTGGAGAAATATGGAAAGGACTTCTATAGCATCTCAAGAGAAattataACGAAATCCACTAGTGAATGCATACAACTCTACTACTTCTGGAAAAAGCTATGTGTGGACTACAAGATGACTCATCTGAAGGTTGAAAATGACGATGCCTCCCAATCACAGTTCTCTTCACAAGTTACTGAGCACCGCCCTCATGTCTGCGAGATGCCAGATTGCTCAgctAGCTTTACATCTAAAGCTGCTTTGCATGGGCACACTCGAATCCATTGTATTGGTCGGAATATGAATCAagttaataataacaacaattccATGATAATAACCAACAATGGTCAATTGCAGTCTCATTCAAATCTTAAAGATGACTTCCCCTGCAAGGTGTGCGGCAAagtTTTCAACAAAGTCAAAAGCAGAAGTGCTCATATGAAGTCGCATCGTCCTCAGGAAAATGATCCAAATACGAGTAGTCTcccacagcagcagcaacagcaacagcagcagcaatcACAACAAAATCAGACTCAACAGCAAAATACAAATTCATTATAA
Protein Sequence: MCSASMGAEGSVTLQLREAIHSSDSSSVDGYSSLDNALTIGYPDPDMLADVLGSLQTASLNNNSNSNNTMISAITLDNVDGSKLNDISSAISSNPTNNNNNNNNGGKSNSSNINNNSKTFNNNSLISCSSNISLNSPISGQIISITGSSSGSSGSSSNCSTTSNSSCSSSSNESISNVSVPGSNPPIVKKQRPKTSSPTRHGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCVMCSKAFKRQDHLNGHMMTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSGLAAAATTPQNQSSSLSPSTGPPTGLSLSPATASGDASSPHGANCIQYTTMGGDDGSGSNSNSSIKQSSSAVNVSVVSSSTQASSSSQCYSVTSSPASSPSSNASIKSVVSGDGLTRQQLDLISQIMQQTKQGTTQLTVGSTTANLKITNQPPSPHQSQVQSNQQHQLQRPRTWNMQTQLQQTQSKVSVIENSTSPMTSISINELLNGSGPHQQQHHQQQQQQQNLSSAAAINQQILNIVKIEQKPVECNLCHRKFKNVPALNGHMRLHGGYFKKEAETKKCDRKDGLGGPPLQTASIGVRALIEEKIISKRCKDLKGAFVVPAPPITAAIRRTASDLENFLTPKSPIVHQSGSSPSDRNNSLPDIGNAVLPSGLQIQKQTIPITQKPSNVSVGTATVSTNTSKATSTMDHKDATLIELLKRGTKVAVRKTSNSDSSQIFTTSSGTLMLPSELSLSTNNSGSTSNNPPLAITLPNGETTPVSLTISQAPNGSGDVYTLTYSTDSAASFFEDSDVYSVSETDMLLQTVDSIQLLNEPEEPDHLDEINSLADFHNDTSTSSSSNLVVNRNSKDMQTVFSSPLQDALPDFQTLHSKDFVLYNNGTCKAITSGGNHTTASKSLATVIKQSISPLPSPLAYPTPPASHETVAQASPFLDDSHHFSDAANSFFQEKSTSDFIDDAGVTFFKDCSNDALTESQKILKLKSVLEDSGQFFKSGDDNSNDVFDTSVVKVEDLLNESSDGANCDLKDFAEQNLAFLEDAQGFLDDSRNATSPLSESFFTSGIGTAEEVKEVLRDVLPDESLNCDPQNSTDIDLYYLPGLGLQSQMMPNSEDPLLSSSPRDFGHRLSVQSHHQQTQMIRMEQPQASSTMQAQLLSKKPDPDASFPLLMATSTSKDGSTEFHFTIQQPEIKQDNETDIKPDISTGQMCVDNQLAAAPQLPPPPFKDTSTAAPVKTQQFFAANEIAPAQQSHHQPQQNILAAAATASPLTSSILKRRLRQGSMCGDTNSHSTSIPRKYELYKSKLRKPSTTHYTPQPILNPGRKGTGLYSNLPKPPTFAQDTLHLDDEFEEAASIMAFLDESKVNIGTAYQATIPALETTNELQSLLVVRGGRGQISVVTDREEMMWDPSVATDEKILTRYIELSKSSAIPLGYHSEEVALKALLQVNGDTPIAVLNLLKSQSNPFQLKWSSLEVEMFLRGLEKYGKDFYSISREIITKSTSECIQLYYFWKKLCVDYKMTHLKVENDDASQSQFSSQVTEHRPHVCEMPDCSASFTSKAALHGHTRIHCIGRNMNQVNNNNNSMIITNNGQLQSHSNLKDDFPCKVCGKVFNKVKSRSAHMKSHRPQENDPNTSSLPQQQQQQQQQQSQQNQTQQQNTNSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01522200;
90% Identity: iTF_00334984;
80% Identity: iTF_01396465;