Svit001193.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- topi
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:10332182-10334780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.73 1.1e+02 4.6 2.1 2 21 117 135 116 136 0.90 2 11 2.8e-05 0.0042 18.5 2.8 1 23 206 228 206 228 0.97 3 11 0.63 95 4.8 0.2 2 23 256 277 255 277 0.88 4 11 0.024 3.6 9.3 0.0 2 19 329 346 328 348 0.94 5 11 0.032 4.8 8.9 0.9 1 22 396 417 396 420 0.90 6 11 0.02 3 9.5 0.0 2 21 435 454 434 457 0.84 7 11 4.7e-07 7.1e-05 24.1 2.0 1 23 472 494 472 494 0.95 8 11 0.0023 0.35 12.5 1.0 1 23 500 525 500 525 0.95 9 11 0.42 63 5.4 1.6 1 23 531 553 531 553 0.88 10 11 1.7e-06 0.00026 22.3 1.0 3 23 561 581 559 581 0.98 11 11 0.027 4.1 9.1 1.2 3 23 589 610 587 610 0.95
Sequence Information
- Coding Sequence
- aTGAACTGTAACAATTTTTGTGAAGAAGACTTCCAAAATTCAGAAGCATGGCTGGCCgaacaaatattttcacaacTTAAAGATTTCAATACTACAccattgaaaaaacaaaatgaagaacAGAAAGAATCTGAATTGACAACAATCAATTCAGATATTATTGATTTGGAAGCATTAAAAAATGCCGGTCCAGTCCCTGAAGAACtgcaacaacaaccacaaaagATTATCAGTCCCAATGTTGAAACTCGCCACGAAAAATTGGGTGCACCTGATTTAGTGAATCAAGAAAAAAcgcaaaatttatttccataCTTTGAGCCACCTTTGTTCTATCCACAAATTGTGGAATGTGCAAATTGCAATTGTGTGTTCGACAACAATTCCTTCCAACAACACATTTGTGACTATGGTGAAGATAATAAGCTAATTGTTCCGGAGCCGACAGAACAATCTTTGGCTCCATTTGAGCCTGGACCAGTCGAGCCACCGTGCATGCGTTTGTTGCGGGAAAACCAAATACGCATCCGTCGTTTTCTTAAAGATGAATTGAGATACGATCTGAATGCCGCAGCCACTTCCGGGTCAACAGCCACCAAGAAGCAGGACGGTCCACATGAATGTAATTTGTGTGAGAGAAAGTTTGTCCATGCTTCTGGGCTCTCACGTCACATGGAGAAGCATGCACTGGATCTGATTCCAACAACTGCAACGGCACAATCAACCAGTAGTTTTTCTTCATCCAATGGTCTAAGGGTGGTAATTAAGTGCACGACTTGTGGGCGGTTATTTTTTGAACCACAAACTGCCGTGGAACATTATGGCACTCATTTCCCAGAAATTATGGACAGAGAAGAGTTTACAGATGCTGCAGAATTTCCATATGAAAATTATGTTGATGACGCAATTGAAGTGCTGAAAAAAGAAGTGATAAGTGTATCTCAAACAATTCATTTCAAGATGGTGATACTAAGCTGTGTTCTGCAATGTGAGTTCTGTGATATGATTTTCTCTCAAGTAGCATATTTGTTTGCTCACTCTGCTTGCCATAAAACGGACAGAAATTTCGAATGTTCCTCATGTGAGATTCAAGTTGGTACTTCCAAAGAAATTTGCATGCATTGGCAGGCAGAGTGTGTATTCTCTCGAGAGAACATCAAACGGGGCTGTTCTTCTCAAAGATTCTACGTCTGCAATGTCTGTGAGAATAAATTTGGATCTTTAGAAAGTTTGCATGAACATAGATATACGGCTTATCACTTCTTTCCAAGACatgacaaaaattcaaatttacttATTCTACCATGCGAATACTGTGATCGGGTCTTTGAGTCTGCTGGCGAAATTGTCGATCACTTTGAAGAGAGACACTATAAGAAGAACAAACGTGATACAACGGCAAAATATCGACAGTACTTATGTGATATTTGCGGGAAAACTTACACACAGTCGAGTCATTTGTGGCAACATTTAAGATTTCACAAAGGCGTGAAGCCTTTTGCTTGCAAAGAACCCGGATGTTCACGCAAGTTTACCATACGGCCAGACCTAAACGACCACATTCGTAAATGCCACACTGGGGAGCGTCCCTACCATTGCCTCATCTGTGGTAGGCGTTTCTTAACAGGATCGGTATTCTACCAACACCGTCTAATTCACCGTGGTGAACGTCGCTATGGATGCGATGAGTGTGGAAAACGATTCTATCGGGCGGATGCTTTGAAAAATCATCATCGCATTCACACTGGCGAAAAACCATACGGATGTTTGTTCTGCACGAAGAATTTCCGACAAAGAGGTGATCGTGACAAACACATCAGAGCCCGACACTCCAGTTTAGATGCTAACGCTCGCCTGATGATGCAAATGCGCAAGATGCAACTCGAAGCGGCTGCCAGggcaaattcaaattcaacaacTCCAGCTGAAGAGGTTCTGATGTTGGGGAATATTCCTTTCCCCAGGAGCATGTTCCAGCCAATATTGGCTGACATTGATGCAACAACAGGgcataaatga
- Protein Sequence
- MNCNNFCEEDFQNSEAWLAEQIFSQLKDFNTTPLKKQNEEQKESELTTINSDIIDLEALKNAGPVPEELQQQPQKIISPNVETRHEKLGAPDLVNQEKTQNLFPYFEPPLFYPQIVECANCNCVFDNNSFQQHICDYGEDNKLIVPEPTEQSLAPFEPGPVEPPCMRLLRENQIRIRRFLKDELRYDLNAAATSGSTATKKQDGPHECNLCERKFVHASGLSRHMEKHALDLIPTTATAQSTSSFSSSNGLRVVIKCTTCGRLFFEPQTAVEHYGTHFPEIMDREEFTDAAEFPYENYVDDAIEVLKKEVISVSQTIHFKMVILSCVLQCEFCDMIFSQVAYLFAHSACHKTDRNFECSSCEIQVGTSKEICMHWQAECVFSRENIKRGCSSQRFYVCNVCENKFGSLESLHEHRYTAYHFFPRHDKNSNLLILPCEYCDRVFESAGEIVDHFEERHYKKNKRDTTAKYRQYLCDICGKTYTQSSHLWQHLRFHKGVKPFACKEPGCSRKFTIRPDLNDHIRKCHTGERPYHCLICGRRFLTGSVFYQHRLIHRGERRYGCDECGKRFYRADALKNHHRIHTGEKPYGCLFCTKNFRQRGDRDKHIRARHSSLDANARLMMQMRKMQLEAAARANSNSTTPAEEVLMLGNIPFPRSMFQPILADIDATTGHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00665153;
- 90% Identity
- -
- 80% Identity
- -