Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:104005934-104010417[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.023 3.4 9.3 0.8 3 20 1007 1024 1006 1026 0.93

2 8 0.00097 0.15 13.6 1.0 1 23 1033 1055 1033 1055 0.99

3 8 0.079 12 7.6 7.5 1 23 1059 1081 1059 1081 0.98

4 8 1.4e-07 2.2e-05 25.7 0.6 1 23 1087 1109 1087 1109 0.99

5 8 8.4e-06 0.0013 20.1 0.9 1 23 1115 1137 1115 1137 0.98

6 8 1.9e-05 0.0028 19.1 0.4 1 23 1143 1165 1143 1165 0.98

7 8 0.00024 0.035 15.6 0.3 1 23 1171 1193 1171 1193 0.94

8 8 1.1e-05 0.0017 19.7 1.0 1 23 1199 1221 1199 1221 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.023	3.4	9.3	0.8	3	20	1007	1024	1006	1026	0.93
2	8	0.00097	0.15	13.6	1.0	1	23	1033	1055	1033	1055	0.99
3	8	0.079	12	7.6	7.5	1	23	1059	1081	1059	1081	0.98
4	8	1.4e-07	2.2e-05	25.7	0.6	1	23	1087	1109	1087	1109	0.99
5	8	8.4e-06	0.0013	20.1	0.9	1	23	1115	1137	1115	1137	0.98
6	8	1.9e-05	0.0028	19.1	0.4	1	23	1143	1165	1143	1165	0.98
7	8	0.00024	0.035	15.6	0.3	1	23	1171	1193	1171	1193	0.94
8	8	1.1e-05	0.0017	19.7	1.0	1	23	1199	1221	1199	1221	0.98

Sequence Information

Coding Sequence: ATGTCTTGTACAGAAATATCATCAATTGTCGCCTATAACCCAAAGCCTATTACAAACCGCTGTGGCGAGGTTCATTGCTGCGAAAAGCTGGAAAACTTTTCGATATATTGTGGTTCTTGTCCGCAGGAGTTTAATCTATTGAGTtgtactttatttattaaacacaTAAAAGAATGCAAATCTATGGTTTTCCAAAACTTTGGAGAACAAAATTTCACTACTCAGGATATCTGTAACTATACCACTGATAATCTACTCAAAGATGCCTCGACAAGCAATAACATTGACAGCAGCGGAGGAGTTAACACAGAAGTACCGCACATTGATCCACTGATGCATCTTAAGTTAGaaattatcaagaaaaaagaCGAGCCGCAGGTATGTAATGAGCCAGTGCAGGACGAAGAATACTTATCAGATTATGTGGAAGAAGATGAATTGTCATTAGAAAAAGTTATAAGCCGAAAGAAAATCGAAGGAATAATTAATGAATATAGAAAACATCCAATTTTGTGGGATCCACGAATGTCTAGATCAACCACTAGTGCAGAGAAAATGGTGCATTATAGGCAAATCACAAGATCAGTTAACCTTAAGTTCAAAATGAATCTAAGATGCAACGAACTACAGCAACAAATTCTTGAACTGAGGCAAGCATATAAAAGAGTTCTCAAGAGGAAGAATAATTTCGATTTCACTAAGGGTAgtacaaaattcaattcaaagctATGGTACTTTAAACATCTAACATTCATCCAAGGCTTAAGTAATGATATTGAGgttgaACTACCATCTTTGGATGAATCGAACTACAATTTAATTGCGAAACAAGAAAATTCTGATAGTGAGACAGAACCAATTTCAAAGAAACAGGAACGCGATAATTACAAAACATTGAATGATCCAAATATAATATCAGATCTCATAGCTCAATACAAGCAATATCCGTTCTTGTGGGATCAGACTGTGCCTCTTTACAACTGCAATTACACGACGAAGAAAACCTACCTTAAAATAACAGCatacatcaataaaaaattcaacaaaaatataacatataaaaatgttaagcaGCAAATTGTAAAACTTTGTAATGGTTACAGAAAGGTTCAGCGAACAAAAGGCAATGCCGACTGTCCAATTAGTTTGTGGTATTATGATGATTTATCATTTATTGATAGGCAGgcaaatgaagaaaacaatGTGATTCCAATTGAAGTCGATGTTCCTGAGAACCTGAATGAAGAGGAAGATTCCATTATAGAATATCAACCTGAAGAGAGCGAGGCCGAAActgatgaaaaagaagaaacaaatgaAGCAGAAATAATTCTAGCTTTAATTGAGGAATACAAAGAACATCCGTGTTTGTACAATAACTACCGTTACAACACCAACTGTCGTTTTAGCCGAGCTGAAGCTATTGATGAAATCCTAACGaatatcaataataaatttaatactagCTTCACCGAAGTAGATATTAAAGCTAGAATCTCCAAACTAAGAAGTAGTTACAGACGCAATTTGCGCACTAAGGAAGGATTTGAAAAGCTTCATGCCAATGCCAAGCGAAAATTTCATCCCAAATGGaagtattttgataaaatgtcatTCATCGATACAAAAGAAAGTGATTTGCAGCAGgttcattctaaaaaaaaagaaggtcaagatggaaaaacaaaaaaagaaatggaagaCACAGCTGAATTTGAAGATGAAGATACAATAACTGATAAAGATGATAGTGACAATGATAACgatacaaaagcaaaaaatgaCCCAATTCACCATGATGAAAAAATGTCCGTCGACACTGATGATGGAGAAAAATCCGATAAgttattcaaaattgaatttttaccTGAAGAAGACGAAGATCAACCTATAAAGTTTGCCCATCTATCTGACCATGACGaagataaaactaTGCCCACACATAGAGTTCTTTTAACAGCTATTATCGACGAATACAAAAAACTACCTTGCTTATGGGCTGTCAAACACTATACGAATAATAACACTTATCGAAGAAAAGCTTTCGAAGTAATTgcaaaaaatgtcaacaatcaATTAAATACATCATACAATTACAAGGATATCAGTTCTGAAATTGTTAAACTACGTGCTTCGTATAAACGCAtggcaaaaagaaaacaagacgATCCAACATACGAATCAAAGTTGTGgtacgctgataaattatcttTTATCGAAGGGAAAGGTCAGGAAGGCAACGGAATACCATCCTATGCTAATGAATCCGAAGACGACAACATGGAGGAAaTCTTTAATAAGAAATACAAGATAAAGTccAAAGAAATGGTTTATCAAATCATAGAGCTTTATAAAAGAGCTCCAATGTTATGGAACACTAGTCACCCCATGCATACGCTACGAACCGAAAGAAGAAAAGCAgttaaacaaataattgaaaCACTAGCACGTGAACATGATTGTGTTCTTACACTTGATGAATTTCGATATCAAATTCGTTAtctaaaaaattcatattatagAACCCTGCGCCAAGAGAATGCCGGTCAAGCTGATATCGCAAATTCTTACATACCAAGACCATTTTTTTTCGATCGATTATCATTTTTGGAACCTTATGCGGAAACATTTCCAATTACTGTACATAATTTGAATTCTGAAGTTTCAAAGCCTGTGGAAGATTTTTCGTATCTGGTCGAAAATAAGCCTTTAATGATTGATTTTATTGAAGTTTATAAGGAATATCCTTGTTTGTGGGACGCATATCACAAGGACAAAAAGAATTTACAAGCTCATTCAGAAGCTTACGATAGGATTATAAGtacgtttttgaaatacaacaTAACATTAAGCAAGGACGATGTTTTAACGGCAATAAGGTTTCTTCACTTTTCTTATGTtaagcagcaaaaaaataatgatgtgAAATTAGAAAGTGAAAACACTAACGAGCCGCATATATGGTTTTATGATCATCTTCTTTTCCTTCGAAAAATACGTAAAAACATTGATAAACATTGTTCGCATTGTGATCAGAATTTCATCACATTAGCAGAATATGAGAAACATAAAATCGAAATTGCCGGCGATTATCCCTACAAGTGTTCGGTGTGTAGTGCTGGATTTATATCACGTTCAAAGTATGTATATCATCAAAATACCCACAAAGAACCTCATAAATGTGACCAATGCGATTTTCAAGCACACGATAAACATAACTTCAATGTCCACATGCGACGTCATAAAGGTATAACACCTTTTAAGTGTTCAGAATGTGGCAAAGGATTTGTAACGTCTACAGAATTGATTCGACATACTCGAATGCACACTGGCGAGCGGCCTTATATTTGCGATATATGCGGAAAATCTTTAACATCCAACTCGGAATTTCGTGTGcataaaaagaaacattctAATCAACGAGATCACAAGTGTGATATTTGTGGGAGTGCATTCTATACACCTAAGGGACTGCGTGACCATATGGCAACGCATTCAAATGAACGTGCACACGTCTGTGAAATTTGCGGAGCAGcttttaaaagaagaaagactCTGCTTCAGCATGAGGCACTTCATGCTGAGATAAAGAAACATGAGTGCAAGATTTGCGGCAAGATGTTCGCTCAAAAAGCGGGTGTTTATTCGCACATGAAATCACATGGTCTAATGGCTGgaagttaa
Protein Sequence: MSCTEISSIVAYNPKPITNRCGEVHCCEKLENFSIYCGSCPQEFNLLSCTLFIKHIKECKSMVFQNFGEQNFTTQDICNYTTDNLLKDASTSNNIDSSGGVNTEVPHIDPLMHLKLEIIKKKDEPQVCNEPVQDEEYLSDYVEEDELSLEKVISRKKIEGIINEYRKHPILWDPRMSRSTTSAEKMVHYRQITRSVNLKFKMNLRCNELQQQILELRQAYKRVLKRKNNFDFTKGSTKFNSKLWYFKHLTFIQGLSNDIEVELPSLDESNYNLIAKQENSDSETEPISKKQERDNYKTLNDPNIISDLIAQYKQYPFLWDQTVPLYNCNYTTKKTYLKITAYINKKFNKNITYKNVKQQIVKLCNGYRKVQRTKGNADCPISLWYYDDLSFIDRQANEENNVIPIEVDVPENLNEEEDSIIEYQPEESEAETDEKEETNEAEIILALIEEYKEHPCLYNNYRYNTNCRFSRAEAIDEILTNINNKFNTSFTEVDIKARISKLRSSYRRNLRTKEGFEKLHANAKRKFHPKWKYFDKMSFIDTKESDLQQVHSKKKEGQDGKTKKEMEDTAEFEDEDTITDKDDSDNDNDTKAKNDPIHHDEKMSVDTDDGEKSDKLFKIEFLPEEDEDQPIKFAHLSDHDEDKTMPTHRVLLTAIIDEYKKLPCLWAVKHYTNNNTYRRKAFEVIAKNVNNQLNTSYNYKDISSEIVKLRASYKRMAKRKQDDPTYESKLWYADKLSFIEGKGQEGNGIPSYANESEDDNMEEIFNKKYKIKSKEMVYQIIELYKRAPMLWNTSHPMHTLRTERRKAVKQIIETLAREHDCVLTLDEFRYQIRYLKNSYYRTLRQENAGQADIANSYIPRPFFFDRLSFLEPYAETFPITVHNLNSEVSKPVEDFSYLVENKPLMIDFIEVYKEYPCLWDAYHKDKKNLQAHSEAYDRIISTFLKYNITLSKDDVLTAIRFLHFSYVKQQKNNDVKLESENTNEPHIWFYDHLLFLRKIRKNIDKHCSHCDQNFITLAEYEKHKIEIAGDYPYKCSVCSAGFISRSKYVYHQNTHKEPHKCDQCDFQAHDKHNFNVHMRRHKGITPFKCSECGKGFVTSTELIRHTRMHTGERPYICDICGKSLTSNSEFRVHKKKHSNQRDHKCDICGSAFYTPKGLRDHMATHSNERAHVCEICGAAFKRRKTLLQHEALHAEIKKHECKICGKMFAQKAGVYSHMKSHGLMAGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -