Svit022251.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:91125358-91127301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0058 0.87 11.2 0.4 2 23 255 277 254 277 0.96 2 10 0.67 1e+02 4.7 2.4 6 23 286 303 286 303 0.99 3 10 6e-05 0.009 17.5 1.3 1 23 309 331 309 331 0.98 4 10 4.2e-06 0.00063 21.1 3.1 1 23 339 361 339 361 0.98 5 10 3.2e-06 0.00048 21.5 0.4 1 23 369 392 369 392 0.96 6 10 0.0016 0.25 12.9 0.2 3 23 400 420 399 420 0.96 7 10 0.0017 0.25 12.9 3.1 2 23 429 451 429 451 0.94 8 10 0.055 8.3 8.1 0.1 1 23 458 481 458 481 0.88 9 10 6.8e-07 0.0001 23.6 1.4 1 23 487 509 487 509 0.98 10 10 3.8e-06 0.00058 21.2 3.3 1 23 515 538 515 538 0.98
Sequence Information
- Coding Sequence
- ATGCTTTGCATTTTATGTATTAGCAATAGTCTTGATCAAACAATTGATATATTTAGTGAAGAAGGAATAACGTTGAATATATGCAGTATAATAAGCAAACACTTTTGGATACAGccaaataaagatgaaaaaaactCAAGATTCATTTGTTCACCTTGCTGGGATTCTTTGCATTCATTTCACAAGTTCTTTAAACAAGTTGAGGAGGCCCATTTATCTTGGATTGCAGATGTTAAGGTTGAAGATGACAATAAAGATACCATTGAAACCTGCCTGCCACTGGTCGTAACTGTTTTAAAcaatgaattaaatattaatactgATGAAACTACTTATGAAAAGCACGAATCAGCCGATGTACAAAAATTAGATGACTCAGACTCGGAGGTTCCACTTGCAGTATTAAAGCAAACTtgtaaaacaaaaccaaataacaGTTCTAGTAATGAAGATGTAGAATCATCGACAGAGTGGCAAGATCAAAACTCGGATAATGACGGTGAAaataatgttgatgatgatgagtctGATGGTGGCGATGATgtcgataatgatgatgatgaagaagataAACAGAATGTAAAACAGCCAAAAATAGCTACCGACACAAAAGCTACCCCACCAACAGCTGGCAAAAAACGCGGTCGACCACTCAAAGGCACTCCTAGAAAAACAATACCAAAACAAGTATCCGAGGAACTTATCAAAAGGAAAAAACTCTCACAAGATTATGATAACATCATACAGGAACACATGAAACTGTCATGCAGCATTTGTCTAATAAATCTGCCCAACTTTTCGGCTCTACGAAAACACTATCGCACCCAGCACTCCAAGCGAGGATATGCATCCTGCTGCGACAAAAAATTCCACAGCAAAAGTATTCTCGTCGACCATATTCATACTCATTTGGACCCGGAGCGTTTCAAGTGTGAGAAATGTAACAAAGTATTGGCTGATCGACGATGCTTGGAGGTTCATATGGATATGCACATCGAGGACAATCAACGCAGTTATCAATGTGACCAGTGTAAGAAAAGTTTCTCCAAGGAAATACTCCTAACGCGtcatatgcatatacatattcCCGAAGAAGAACGAAAGTTTCCTTGTGAGGAATGTAACAAGCTCTTCTCATCAAATTATACACTGAAAGCTCACATCAACAACGTCCACCAGAATACCTATGGAAAAATCTGCGACCAGTGCGGCAAGTCTATAAGAGGCCGAGAAGCATTCCAAAGACATTTACTAGAGCATGCTGGTATTCCAGTGCCCGGGGAACAATGTGATAAATGTGGagcgaaattgaaaaataaatattgcctCAAGAGGCACATCAGTGCCAAGCATGCGGATCTGAATGTACCACATGTTTGTATCATTTGTGGTAAAACCGCTCCAAATGAGCCTGCATTACAGAGACATTACTATTACGTGCACAGATGTGCACGCAATCACAAGTGTCCTATGTGTGAAAAGGCCTTTAAAAAAGCTAGCGGACTGAGGGAACACATGACCACTCACACCGGAGAAGTTCTATACACATGTCCATATTGTCCGAAAACATTCAACTCAAATGCTAACATGCATTCACatcgaaaaaaaatgcatcGCAAGGAATGGGAGGAAAACCGCCAAAACGCCGCACTAAAATTGTAA
- Protein Sequence
- MLCILCISNSLDQTIDIFSEEGITLNICSIISKHFWIQPNKDEKNSRFICSPCWDSLHSFHKFFKQVEEAHLSWIADVKVEDDNKDTIETCLPLVVTVLNNELNINTDETTYEKHESADVQKLDDSDSEVPLAVLKQTCKTKPNNSSSNEDVESSTEWQDQNSDNDGENNVDDDESDGGDDVDNDDDEEDKQNVKQPKIATDTKATPPTAGKKRGRPLKGTPRKTIPKQVSEELIKRKKLSQDYDNIIQEHMKLSCSICLINLPNFSALRKHYRTQHSKRGYASCCDKKFHSKSILVDHIHTHLDPERFKCEKCNKVLADRRCLEVHMDMHIEDNQRSYQCDQCKKSFSKEILLTRHMHIHIPEEERKFPCEECNKLFSSNYTLKAHINNVHQNTYGKICDQCGKSIRGREAFQRHLLEHAGIPVPGEQCDKCGAKLKNKYCLKRHISAKHADLNVPHVCIICGKTAPNEPALQRHYYYVHRCARNHKCPMCEKAFKKASGLREHMTTHTGEVLYTCPYCPKTFNSNANMHSHRKKMHRKEWEENRQNAALKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00426589;
- 90% Identity
- -
- 80% Identity
- -