Svit021673.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:81782848-81787046[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 9.9 1.5e+03 1.0 0.1 1 16 3 18 3 19 0.88 2 20 1.8 2.6e+02 3.4 0.3 3 23 180 201 178 201 0.89 3 20 3.3 5e+02 2.5 0.3 1 23 208 233 208 233 0.88 4 20 1.9 2.9e+02 3.3 5.3 2 19 244 261 243 264 0.92 5 20 4.7 7.1e+02 2.0 6.0 2 23 275 296 274 301 0.89 6 20 0.063 9.5 7.9 0.1 3 23 305 326 304 326 0.94 7 20 0.00051 0.077 14.5 4.0 1 23 332 354 332 354 0.98 8 20 0.19 28 6.5 5.9 1 23 360 382 360 383 0.95 9 20 9.3e-05 0.014 16.8 2.1 2 23 390 412 390 412 0.95 10 20 0.00088 0.13 13.8 0.1 1 23 459 481 459 481 0.96 11 20 0.0095 1.4 10.5 2.0 1 23 486 508 486 508 0.99 12 20 0.12 18 7.1 0.2 1 23 524 548 524 548 0.96 13 20 0.00012 0.019 16.4 3.5 1 23 552 574 552 574 0.98 14 20 0.0022 0.33 12.5 1.1 1 23 581 604 581 604 0.96 15 20 0.0036 0.54 11.9 1.2 2 23 610 632 609 632 0.95 16 20 1.3e-05 0.002 19.5 0.3 2 23 636 658 635 658 0.97 17 20 6.2e-05 0.0093 17.4 1.4 1 23 664 687 664 687 0.96 18 20 0.0024 0.36 12.4 1.1 1 23 693 715 693 715 0.98 19 20 0.00053 0.08 14.5 3.9 1 23 721 743 721 743 0.98 20 20 0.002 0.31 12.6 0.1 1 23 749 774 749 774 0.96
Sequence Information
- Coding Sequence
- atgaaATTCAAATGCCTTCGATGCAATGCTTCGCTCTCAGATGAGttccaattgatttttgatGAAACTGGCATTGAACTGCAGCTGGACAAACTTCTTGTTGAATACTTTGAGATCTGCGTTGTGAAAGATCCAAAAACAACTCAAGCCCTTTGCACTGAGTGTGTTAACAAACTTATAGAACTCTATGATACTCAAGTTTATAAAGAAGAAAAGCTAGATATAACCGAGAATGATGAGAGCATTCAAGCAGGGATATTAACCCCCACCAAAGATGACACCCAAGGCGACGAGGGCGATGATATGATAATTGAAGAATTCGAAGAAGAAATTGACAATGATAGAGATTTTGAGGAACTAATTGAAGAATCAATGTTCACAGATAACGAAGAATTTTTTGGATTCGAGGAAACTGAAGAAAATGTAGAAAACTTTGATGATAGGATTTCCAATCTGGGCGGGAAAAGCCTTCAGCAATATTTGGATAGTGTTATTAAAAGTGACCTAGGTCAAATTGCTTTTGACCAGAATTCCATTTGTAGACTATGTAATGAGACATTAAACAGTCACAGTGATGTACTTGTGCATGCTTTGGAAAATCACGAATCTGAATCCGAAGAGTATCCATGCGTTTTCTGCGAGGAACTAAAGCATTTCGATTCTATCTTAAATTTGGCACGCCACATTGTCTTAAAACACTATGACTTGTATTCgatgaCGATTTATTGCACGTGTCCAGAATGTAATTCGAGATTTTCATCTTTTCTAGAATTTAATAAACATTCTtgctacaaacaaaattttggcaacCGTTTACAACAAGAATGTAATAAATGCTCGAAAAAGTTCATTTCAAATAAACGATATCGATTTCACTTGCAATTCcatctcaaaaaacacagaccTAAAGCTTGTTTTATCtgtgacattttattttctgatgaaaatgaattttttgaacacattatGTTTGCTCACGAGAAGGATGATTCATTCGTATGCAAgaaATGCGATCGAGTATGCACAACAAAACAGCTTTACGACAACCATATGAAACTTCACGATGCTGTTCGATCATTTCACTGTCAGTACTGTTCGAAATCTTATTTGTATAATCAAATGCTAATGAATCATATTcaacaACATCACACCAACGAACAATCGAATGAATGTACAATCTGCAAGAAATCTCTGGCCACTAGACATCTTCTAACGCGACATATGCAATTGATGCATCAGCAAGAAATCGAGAACGATGTATTTGTATGTTTAACTTGCGGCCTTATTGGAATTTCTGAAGATGATACAATGTTCCATGCAGGCAATGATAAGTGTCCAGCACAAGAAATTAGCATTGAGTGTTTGAAAATTGCTTATGCTTGTGAATTTTGTGAATTAGCATTCAAAAGCATCGAGAATTTGAAAACCCATTGGGCAATTCATGATGATAACATTTTTAAGTGCTGGATGTGTGAGAGTAAATATTCAGAGTATAAAAAGCTGAAAACGCATATTCTCACTCACAAAAATATAGAACCCATACAAAAATCATTTCCAATCAACAGATATTATGTATGCAATATTGATTCGTGTGACCAATCATATCTAACATGGCCATCTTTACGTGCTCACAAGACACGGCATGCAACTAAATTCAATTGCGAAGTTTGTTCTCAAACATTTACCACCGAGTCAAAGCTCCATACACACCTTAAATCCCACGATAATGATAATGAAGGATATCCCTGCCAATTTTGCTCAAAAGTGTGTATTTCACAAATGTCACTTTCTGTGCATATTGCACGAAAGCACAATAACAatTGCAAATCATGCCCTACTTGTAAGGCTACTTGCAGTTCTGAAGAAGCCCTCAAAACACATATCGAAAGCCAACACACCGAGGTGAAATGTGATCAATGTGGCAAGATAACGAAGAGTAAACGAAATCTTGAAATTCACATTCAAATGATTCACAGTCAAATTAAGAGGTTCTTTTGTTCTACATGCAATAAGGGTTACTTTAATAAAAGCGATCTTAAGGCTCATGAGAGATCTGTCCACACAGAACTCAACAAATTCAAATGTGAATTATGTAATTTTAGCTCAAGCTATGAGGCATCTTTTAAAGCTCATCTGCTAAAGCATACTCAAAATAAACCATTTAAATGTGAAGAATGTTCAAGAGAATTTACTCGCAAAGCATGTTATAAACTGCATGTACTCAGGCACTCTGATGAAAAACCATTTATGTGTCCAGTTGAACATTGTGGTCGAAGTTTTGTAATGCCAGGGATTTTAAATACACATATTAAAAATGCTCATCCAGAATgTACTGATGAAAGCAAAGTTAGGAAAACTCCTCAGCGTCCAGCTAAAAAGAAGAAGCCAAATTCAAAGCCTTCGAAGCAAGATGTGGAATCTGCCAACTCATCTGATTATGTTATAACGGAAGTCTATTCTGAAAGTGAATATTTAGATGGAGACGGTGATATTGTTATATTTGATGGAACAAGTGCTGAAGAAGAAATTATATTAACTGAAGGAAAGATGATGTACATAGATTAA
- Protein Sequence
- MKFKCLRCNASLSDEFQLIFDETGIELQLDKLLVEYFEICVVKDPKTTQALCTECVNKLIELYDTQVYKEEKLDITENDESIQAGILTPTKDDTQGDEGDDMIIEEFEEEIDNDRDFEELIEESMFTDNEEFFGFEETEENVENFDDRISNLGGKSLQQYLDSVIKSDLGQIAFDQNSICRLCNETLNSHSDVLVHALENHESESEEYPCVFCEELKHFDSILNLARHIVLKHYDLYSMTIYCTCPECNSRFSSFLEFNKHSCYKQNFGNRLQQECNKCSKKFISNKRYRFHLQFHLKKHRPKACFICDILFSDENEFFEHIMFAHEKDDSFVCKKCDRVCTTKQLYDNHMKLHDAVRSFHCQYCSKSYLYNQMLMNHIQQHHTNEQSNECTICKKSLATRHLLTRHMQLMHQQEIENDVFVCLTCGLIGISEDDTMFHAGNDKCPAQEISIECLKIAYACEFCELAFKSIENLKTHWAIHDDNIFKCWMCESKYSEYKKLKTHILTHKNIEPIQKSFPINRYYVCNIDSCDQSYLTWPSLRAHKTRHATKFNCEVCSQTFTTESKLHTHLKSHDNDNEGYPCQFCSKVCISQMSLSVHIARKHNNNCKSCPTCKATCSSEEALKTHIESQHTEVKCDQCGKITKSKRNLEIHIQMIHSQIKRFFCSTCNKGYFNKSDLKAHERSVHTELNKFKCELCNFSSSYEASFKAHLLKHTQNKPFKCEECSREFTRKACYKLHVLRHSDEKPFMCPVEHCGRSFVMPGILNTHIKNAHPECTDESKVRKTPQRPAKKKKPNSKPSKQDVESANSSDYVITEVYSESEYLDGDGDIVIFDGTSAEEEIILTEGKMMYID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00664305;
- 90% Identity
- -
- 80% Identity
- -