Svit000050.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- CAUAQF010000053.1:17232-26361[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.35 12.4 0.1 1 23 143 166 143 166 0.97 2 13 0.016 2.5 9.8 0.1 2 23 182 202 181 202 0.97 3 13 0.058 8.7 8.1 0.4 2 23 329 349 328 349 0.95 4 13 0.0017 0.26 12.9 1.7 1 23 355 378 355 378 0.95 5 13 1.4 2.2e+02 3.7 0.7 3 23 386 406 384 406 0.90 6 13 2.7 4e+02 2.8 5.6 2 23 411 432 410 432 0.96 7 13 6.7e-05 0.01 17.3 1.0 1 23 438 460 438 460 0.96 8 13 4.4e-07 6.6e-05 24.2 1.5 3 23 472 492 471 492 0.97 9 13 3.2e-05 0.0047 18.3 2.6 2 23 500 521 499 521 0.97 10 13 0.00036 0.054 15.0 0.6 2 23 527 548 526 548 0.92 11 13 0.00039 0.059 14.9 3.6 1 20 554 573 554 576 0.94 12 13 0.00089 0.13 13.8 0.6 2 23 582 603 581 603 0.91 13 13 2.9e-06 0.00043 21.6 0.3 1 23 608 631 608 631 0.98
Sequence Information
- Coding Sequence
- atgtttgaCTCTTTGCCCGTTTGTCGGGTGTGCTTAAAAACATCACTCGAATATATTGATTTTGATACACCATTCGAGATGGACGCCAGCATCAAATCAATGGACAACGATCTTACGTATCTTGATTGTTTTCAAGCTTGCACTCGTATCGAAATCGAATTCGATAACAATTACCCGCAGAGTTTATGCAGTTCATGTGGTTATGAACTTAAAATTgcttttgaatttcttcaaaaagcCGAGGTTGCCGATAAGACGCTACGTGAGTTATCTGCAAGTACAAAAGTTGAAAAGTTCGATGATGAAGAAATGAAATGTTTCCTTGAACCTGAATTAATATCATCTAATAATGATAATTTGTCAACTGTTGATGAAAATCCTCAAAATCCGAAACCAACAGAAAGCCTATTGGATGATGAAAAAACATATGTTTGCACAGTTTGTggagaacagtttttttcacaACTAGTTCTCAACATACACGTCAACCGTTTACATTCAAAAAACTTGATTGATGATCAAAGCAATGCAATTGAGAAAGTTGAATGTCCGATTTGTGAAACGATCTTGTCTTCAGATAGCTTGAACACCCATTTGCAAATGCACGAAGAAGAATCCGATGTTCAAGACAATGACAATGATAATGACCATGATAAtgagaatgaaaatgaaaataatgagAAAACGACAATGTATGAAGAAGTAGTTGTGGATGAACCGGAAGATGTCGAatttgaaatgcttgatatgACCAATATTTCaacagaagaagaggaagaacaAGTAAGAATTTTAAATGAGTCTGAAGATGCTAACTACTCTCAAGATGTTACTGGAGCTGCTTCCGATGGTTATGAACCTGTTGACCAAGATGAAGAGGAAATGCttgcacaaataaaaaatgaaacagatGAAGATTTTAATGTCATAGCTAAAATGATAACTGAACAAGAAAAACATCGAGTTAAAAAGGAGAAACTTAAACAATGTGAAATTTGCAAGAAGTATGTTCGAATAACTGCATTTACTGCCCACATGAACGTACATAATGGTGTACGTCAATTTCCATGCCAATACTGTTTCCAGGCATACTTTTCCAAACGTTCATTGCAAAAACACGTTAAGGCTAATCATTCTGACATTCTGGACTCTTGTTGTAAAACTTGTAATGAAACAGTTGAAGCTTCTGATATGAAGGCTCACATAGAAGAAAAACATTCACATATAGTGAAATGCACGGAGTGTGACCATGAATGCCAAGAGACTAAAATGAAAGAACACATGAAGCGGAAACATTCAGAGTCTAAAGACTATTTATGCAACGTTTGTTCCAAAACATTCAGTGCGCTTGGCTTACTCAATGCCCATATGAAACATcacgaaaaaaaagatatcagcGCTAAATCGGAGGCATGTGATATATGTAACAAAGTATTCTCTTCGAATCATTATCTTAAAAAGCATATGCTAATACATCAGGAGCAACGTAATCTATTAGAATGTAGATATTGCGAAAAGACCTATCATTCCAAAAATTCTCTAGAAAATCATATGCGAATTCATACCGGTGACACTATCAAATGCATTATGTGTTCAAAAGAATTTGGCCGCCAATACGAATTGAATGTTCACATGCGATTTCACACAAAAGAATATCCATTCCAATGTGAATTGTGCCACAAAAAATTCGCCATTAAGGGTCACTTGAGAACACATATGTGGCGTCATCAAGGTCTTAAATTGCAGTGTGAAGAATGTGGCAAACTTTTTACATCTACAAAAGCGTTGCAAGAGCACTCCTTCTATCATTCTGAGATGCCCTACCAATGTCCGTACTGTCCAAAAGCATATCCTTCGAAACCGAAATTCAAAGTTCATTTGAAAACTGCTCACATGGTGGAATTCTCGAATGAGGAATTGcaaaaaatgtgcaaatttaCTATACCAAAAAGACCCCGCTCCAGAAAGTTTACCTTAGTTCAGGCGGACACCGTTATTAAAGAAGTTGAAGtccatacaaaatttgaaattgattag
- Protein Sequence
- MFDSLPVCRVCLKTSLEYIDFDTPFEMDASIKSMDNDLTYLDCFQACTRIEIEFDNNYPQSLCSSCGYELKIAFEFLQKAEVADKTLRELSASTKVEKFDDEEMKCFLEPELISSNNDNLSTVDENPQNPKPTESLLDDEKTYVCTVCGEQFFSQLVLNIHVNRLHSKNLIDDQSNAIEKVECPICETILSSDSLNTHLQMHEEESDVQDNDNDNDHDNENENENNEKTTMYEEVVVDEPEDVEFEMLDMTNISTEEEEEQVRILNESEDANYSQDVTGAASDGYEPVDQDEEEMLAQIKNETDEDFNVIAKMITEQEKHRVKKEKLKQCEICKKYVRITAFTAHMNVHNGVRQFPCQYCFQAYFSKRSLQKHVKANHSDILDSCCKTCNETVEASDMKAHIEEKHSHIVKCTECDHECQETKMKEHMKRKHSESKDYLCNVCSKTFSALGLLNAHMKHHEKKDISAKSEACDICNKVFSSNHYLKKHMLIHQEQRNLLECRYCEKTYHSKNSLENHMRIHTGDTIKCIMCSKEFGRQYELNVHMRFHTKEYPFQCELCHKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFYHSEMPYQCPYCPKAYPSKPKFKVHLKTAHMVEFSNEELQKMCKFTIPKRPRSRKFTLVQADTVIKEVEVHTKFEID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335316;
- 90% Identity
- -
- 80% Identity
- -