Svit023394.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:109205576-109207615[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 1.7e+02 4.0 0.4 2 10 7 15 7 17 0.91 2 14 0.61 91 4.9 0.3 2 23 173 197 172 197 0.80 3 14 7.3e-05 0.011 17.2 3.0 1 23 203 225 203 225 0.98 4 14 2.8 4.2e+02 2.7 0.1 3 10 232 239 230 247 0.84 5 14 0.18 27 6.5 0.2 2 11 260 269 260 275 0.87 6 14 6.2e-05 0.0094 17.4 6.8 1 23 289 311 289 311 0.98 7 14 2.5e-05 0.0037 18.7 0.6 1 23 317 339 317 339 0.97 8 14 6.6e-06 0.001 20.5 2.2 2 23 345 366 344 366 0.97 9 14 0.016 2.4 9.8 2.1 3 23 375 396 373 396 0.90 10 14 0.00015 0.023 16.2 1.6 1 23 421 443 421 443 0.99 11 14 1.2e-05 0.0017 19.7 1.8 1 23 449 472 449 472 0.96 12 14 2.2e-05 0.0033 18.8 0.6 1 21 478 498 478 501 0.89 13 14 1.7e-06 0.00026 22.3 1.1 1 23 507 529 507 529 0.98 14 14 1.8e-05 0.0028 19.1 1.2 1 23 535 557 535 557 0.97
Sequence Information
- Coding Sequence
- ATGAGTATTTCAGAAAGGACTTGCAGAACCTGTGGCAAAGTATTTGAGTTGGACGACGGTACTTCTGCTCTCTTTCCACTATTTAACTCAATCGATTATGGAACtgaattaaaagttattttagaAGAATTCGAGATAtggaatttaaatATATCTCAAAACGATGGTCTACCACAGAAAATTTGTCTAACATGTTTTGATAGTTTTTGCCAAATTCATAACTTTCGCGTATTGTGTATAGAAGCACAaatgaattttggtgaaatGTGTACTGGCTTGGATATAATTATTCAAGATAAAATAACCGACGAAGATTATGATTATCCTGAAAATTTCGATGGCGAAGAGTCGGTGATTGTTCAAGAATACTTCACATTTCCTGGTGATGAATGTTTAAAATCATCATCGTTACCAAACATACCCGCCACTATAATATATCCGGTTGATTCTGAAGATGAAGATAAAAGAAACGATGAGAATCTCGGTCTATCAGAAAAGACCGAATTCAAAGAATATCGATGTGAATTCTGCATGGAAATTGTGAGTTTCGATGACCCTGACTTGCTTAATGAGCATTACAATAAATTACATTCAACAAATCTACCTTATACGTGTCCCAAATGTGACAAGTGTTTTGATACAAAACCAAAGCGAAATAGCCATGCACGAATTCACTACCGAATAGTTCTCGATTGtgaaaaatgtggaaaaaaagtAAGAGGTGGAGAAAAATTAATGATGCAGCATATAGACTATTATCACGTTAATAAAGACCGTGAATGCCCTACTTgtggaaaacaatttaaaatgatCTCTTTGAAAAGATTCAATTACCACAAGAGTTGGCATGATGATTCCAAGCTGCACAAATGtaaatattgtgaaaaaaagtttatccaAACTACTCACTTAACCGTCCACGAGAGAACTCATACTGGAGAAAGCCCATTTAAATGCAAAGAATGTGGATTGGcttttaaaaattcaaatcttttgGGCAACCATACTCAATTACATGGAGGCAGAGAAATCGTATGTCCCCAGTGCCCTAAAAAATTTTATCATCGCCATGCTTTGAGACTCCACATGCAAGTTCATAACCCAGAAAGGTTGAATTCTCATTGTGATATTTGTAATATAACATATCGCTCTCTAATGAACTTGCGTTTGCACAATTATAAAAAGCACAATGCCCCGGCCACACCGTCAATACTTAATATACTCAAAAAACGAGAAATAAAACATCCAATTATCAAACCTTATAAATGCAGTGAGTGTTCGCAGGCATTTGTATTGCACACACAATTagtgaaacatttaaaaattcacaaagaAGTTAGGCCATTCTCatgtaaaatttgtttgaaggcATTCAAAAGATTGGCGCATTTGAAATTACACATGGATTCGTtgcatttgaataaaaaaccaCATAAGTGTTCGATATGTGGATGGGCTTTCCCACAAaggaataatttaaaagaacacTTTGCTGCTAAACATGctaacaaaaaagattttaagtGTGAACTTTGCCCAAAAAATTTTGCGACATTAAAGTCTCTTAAAACTCATATGATAAAACATTCTGAGAAAAAACCATTTGTATGTACAGTATGTAATAAGAGCTTTAAGCAAATGTTTGTGCTAAAAActcACATGAATGCTCACTTAAGGAAGAACGAGGCAGACGTCGAAGGTGGTGATATAACGGATATTGTAATTAAAGATGAATTATGA
- Protein Sequence
- MSISERTCRTCGKVFELDDGTSALFPLFNSIDYGTELKVILEEFEIWNLNISQNDGLPQKICLTCFDSFCQIHNFRVLCIEAQMNFGEMCTGLDIIIQDKITDEDYDYPENFDGEESVIVQEYFTFPGDECLKSSSLPNIPATIIYPVDSEDEDKRNDENLGLSEKTEFKEYRCEFCMEIVSFDDPDLLNEHYNKLHSTNLPYTCPKCDKCFDTKPKRNSHARIHYRIVLDCEKCGKKVRGGEKLMMQHIDYYHVNKDRECPTCGKQFKMISLKRFNYHKSWHDDSKLHKCKYCEKKFIQTTHLTVHERTHTGESPFKCKECGLAFKNSNLLGNHTQLHGGREIVCPQCPKKFYHRHALRLHMQVHNPERLNSHCDICNITYRSLMNLRLHNYKKHNAPATPSILNILKKREIKHPIIKPYKCSECSQAFVLHTQLVKHLKIHKEVRPFSCKICLKAFKRLAHLKLHMDSLHLNKKPHKCSICGWAFPQRNNLKEHFAAKHANKKDFKCELCPKNFATLKSLKTHMIKHSEKKPFVCTVCNKSFKQMFVLKTHMNAHLRKNEADVEGGDITDIVIKDEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -