Svit026329.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288110.1:40555584-40557534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.5e-06 0.00067 21.0 2.2 1 23 119 141 119 141 0.99 2 10 3e-06 0.00046 21.5 7.1 1 23 147 169 147 169 0.98 3 10 9.7e-07 0.00015 23.1 2.0 3 23 183 203 181 203 0.95 4 10 0.3 46 5.8 2.4 2 21 210 229 209 231 0.92 5 10 5.8e-08 8.7e-06 26.9 4.9 1 23 237 259 237 259 0.98 6 10 1.2e-06 0.00019 22.8 0.4 1 23 265 287 265 287 0.99 7 10 3e-06 0.00045 21.5 1.9 3 23 295 315 294 315 0.99 8 10 0.0027 0.41 12.2 0.3 1 23 321 345 321 345 0.93 9 10 0.0017 0.25 12.9 3.3 1 23 351 373 351 373 0.98 10 10 0.0006 0.09 14.3 2.1 1 23 379 401 379 401 0.95
Sequence Information
- Coding Sequence
- ATGAAGCCGCTTTATGGTTTTTCTTTGGACGAAATGCTACGCTCCCTTGCTGGCATAGAGGTGGAACCTAATGATGGCCTTCCAGAGCTCTTATGCTTTCAATGCGTTCTTCAGTTAAGTCGAGCTTTCCGTTTTAAATTGCAATGCCAAAAGTCAAATATAACTATGCTAGAATTTATTCAAACGGCTCGATTTCATGGCAACGAAGTCAATAGCTATTGCGAGGAAAGGGAGGATGTTGTTTTTAATACTGATGAAAATCAAAGTTTCGAACTGACTTCAAGCAAAGAGAAATCTTGTTTATCTATTGAAAAGCCTCAGACTACTGCTTTAGCTGAAGTTGAAATAATTAGTTTCAAATGTGAGACTTGTAGGAAGGTATTTAATTTACGGAAGCAACTTGTACGGCATATGAAAATTCATGATGACAATAAAGCCCACAAATGTTTAGAGTGCAATAAAACGTTTTCACAAAGTTGTAACCTAAATAAGCACATGCTAAAACATAATGCTGAATTAAATACTACTTCAAATAGCCAGCATCTATGTTCAGTTTGTGgAAAAAGCTTTAAGTACGCCAGTTCCCTTTCTAAACACATAAAACTTCATACGGGAAAACACCTTTTATATTGTCCTACCTGTCCGAAATTCTTTTTAGAGACTACCACTCTGAATAATCACTTGCGATGTCATACAGGAGAACGCCCATTTGTTTGTCGCCATTGCAATAAAAGCTATACAAATTCGTCTAATCTCAAAAAACACATAAGATCACATGGTGATAAAAGACCGTTCAAATGTAACATATGCGGCCGAGCATTTGCAGAACGGAATTATTTGACTATCCACGTCAAAACTCACAGCACGCAACAGAATGCACTTTGTAGCAAATGCGGGAAATGTTTAGCAAATGCCAAGAGCTTAAATGCTCACATGCGTACACATACCAGCAAACGAACACATCCGTGCGGATTTGAAAATTGTGTCAAGAGTTTTTCTCGGCCGGACACAGCTGCAATACATAGAAGGGTTCACATAGGTAAGAAACTGTTCTCGTGTGATAAATGCAGCAGTTCCTTCAAAACACGAAATCAGATGTTAAGTCACTCAAGGACACACATTGCCGAAAAATGTTTTGCGTGTAATCTATGCTCATTGACATTTTCTTCGAAAAGAAACTTTAATctgCATTCAAATAATCATTACTGCGCTGAATCAATTGGACATATTATCAACCAGGAAAATGAACATTGCATTCTTCAACAAGGAGaggaaaaaagtgaaattctaGAGCAATCGTTACTCTTGTTCAAGCTTAATGAAACCGGAGAGTTGGTTCCGGAATCAGAATTTTCTCTTATATCCCCTTAG
- Protein Sequence
- MKPLYGFSLDEMLRSLAGIEVEPNDGLPELLCFQCVLQLSRAFRFKLQCQKSNITMLEFIQTARFHGNEVNSYCEEREDVVFNTDENQSFELTSSKEKSCLSIEKPQTTALAEVEIISFKCETCRKVFNLRKQLVRHMKIHDDNKAHKCLECNKTFSQSCNLNKHMLKHNAELNTTSNSQHLCSVCGKSFKYASSLSKHIKLHTGKHLLYCPTCPKFFLETTTLNNHLRCHTGERPFVCRHCNKSYTNSSNLKKHIRSHGDKRPFKCNICGRAFAERNYLTIHVKTHSTQQNALCSKCGKCLANAKSLNAHMRTHTSKRTHPCGFENCVKSFSRPDTAAIHRRVHIGKKLFSCDKCSSSFKTRNQMLSHSRTHIAEKCFACNLCSLTFSSKRNFNLHSNNHYCAESIGHIINQENEHCILQQGEEKSEILEQSLLLFKLNETGELVPESEFSLISP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -