Basic Information

Insect: Syrphus vitripennis
Gene Symbol: su(Hw)
Assembly: GCA_958431115.1
Location: OY288108.1:21529429-21535280[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0002 0.031 15.8 0.8 1 20 147 166 147 168 0.95

2 12 1.5e-05 0.0022 19.4 0.3 3 23 219 240 217 240 0.92

3 12 0.12 19 7.0 0.0 1 23 246 268 246 268 0.95

4 12 5.9e-05 0.0088 17.5 4.1 1 21 275 295 275 296 0.94

5 12 2.5e-06 0.00037 21.8 0.4 3 23 309 329 307 329 0.97

6 12 0.00026 0.039 15.5 5.8 1 23 341 363 341 363 0.98

7 12 3.7e-05 0.0056 18.1 0.7 1 23 369 391 369 391 0.96

8 12 0.00016 0.025 16.1 0.7 1 23 397 419 397 419 0.99

9 12 2e-07 3e-05 25.2 2.1 1 23 425 447 425 447 0.98

10 12 0.00014 0.021 16.3 2.8 1 23 451 473 451 473 0.96

11 12 0.00086 0.13 13.8 0.7 1 22 499 520 499 523 0.90

12 12 0.74 1.1e+02 4.6 0.6 2 23 530 552 529 552 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0002	0.031	15.8	0.8	1	20	147	166	147	168	0.95
2	12	1.5e-05	0.0022	19.4	0.3	3	23	219	240	217	240	0.92
3	12	0.12	19	7.0	0.0	1	23	246	268	246	268	0.95
4	12	5.9e-05	0.0088	17.5	4.1	1	21	275	295	275	296	0.94
5	12	2.5e-06	0.00037	21.8	0.4	3	23	309	329	307	329	0.97
6	12	0.00026	0.039	15.5	5.8	1	23	341	363	341	363	0.98
7	12	3.7e-05	0.0056	18.1	0.7	1	23	369	391	369	391	0.96
8	12	0.00016	0.025	16.1	0.7	1	23	397	419	397	419	0.99
9	12	2e-07	3e-05	25.2	2.1	1	23	425	447	425	447	0.98
10	12	0.00014	0.021	16.3	2.8	1	23	451	473	451	473	0.96
11	12	0.00086	0.13	13.8	0.7	1	22	499	520	499	523	0.90
12	12	0.74	1.1e+02	4.6	0.6	2	23	530	552	529	552	0.91

Sequence Information

Coding Sequence: ATGTGCTACGAAGATCTATGGAAAAAAGAAACGAAACCATCTAGTACAATTTTCCCAACAATCGAGACTACAAGATCAACAAGAAGTAAAACCTTTAAAGAACCATTAAAAACACAAACGTCtatcaaaaaatatctcttAAATACCAACAAACCAATACGAACTACCGAATTAGAAAATGAAGTAGAATTTATTCTAACAGAAAATGAAGCTCCAACTGAACATTATGTCTTAACAGAGTTCAAAAATGACGACGAAGAGCAAGAAAACGAGATAAACTTTGTACTAACGGATAATTTTAATGTTGATAATGAAGGACCAGTAGCCGAAGTTACGGAAGAAATTCAAATTGATGAAGAGGTAGATGAGGACGAATTAGATGACGATGATGAGGATGATGTAGACGCAATGGTTGTAAGGACACAAGAAATTGTCGAACATGTTTGCGGTAAATGTTACAAGTCATTTCGAACAGTaaagGCTTTAAAGCGACACAttgcattttgtgttttttccgCTGAATTAGTATCGCGCAGAGAAGAgatgttaaaaaatatcgaaaaaattgaATCAGAATCTTTGCATATGCATAAAAAGGATATTTGCTTTTGTTGCGGTGATAGCTACGACACATGTCATGGAGGTCATATTAATTGTGCTGATTGTCCTAAAACGTTCAAAACTCAACTAAGTCTCGAACGTCACATGTTTCTAATTCATTCTGAGAACAATGATTTTCCTTGTCCAATATGCAATGGTAAAATTCGAACAGCAGCTTTATTAGATCTTCATATTGACCAGCACATGACACGTGGCAAACCATTTGCGTGTAAATCATGTGGCAAAGATTTTACTCGACATTATCATTTGAAACGACATCTAAACTTTTCGACATGTGGTGGGAAAAAAGCCGAAACGATGGCGTGTAGAGTGTGCGGCAAGGATTTTGCTCGATTGGATAATTTACGTTCGCATTTAAAAACCCATTTGGGCCAAGGGCCATCGACAAAGAAATCTGATTATATGTGTCCATGTTGCAAAAAGTGCTTCTATAGTTTGTCGACATTGAaTATTCATATTCGAACTCACACTGGGGAGCGGCCTTTTGATTGTGATCTTTGTGATAAAAATTTCCCATCATTGGTTGCTTTGAAGAAGCACAGGAGGTTCCACACAGGCGAGAAACCATATACTTGTTCGGtgtgcaATTCGAATTTTGCAGTCAAAGAAGTTCTCAACAGACATATGAAACGTCACACTGGAGAAAAACCACATAGCTGTGATGAATGTGGTAAGCGATTCATCCAAGCCactcaattaaaaaatcatcttcGAACACATTTAAGGCCGCATGAATGTTCAGAATGTccagaaaaattcaaaacccgAATTCAATTGGAAAAACACTTTAAACaacataaatctttaaaaaagaaagaggCTAGTCCCATATTAATTGACCCTAATGCAAATAAAAGAAGAcaacacaaacaatacaatTGTGAAGATTGTAATCTGAGCTTCCGGACTGTAGCGTCATTTTTGCGCCATGAGCAGTCTCAGCAGCATATGGaaaacgcAAAGAAACGGTGCCAGATATGCGGTTTGGAACTCAAGAATACAAAAGCTCTACAATTTCATGTTCTCAAATACCATGAAACTTCAACGGAAAATgggTCACCAAATGAGGCTGAAACAGTCAAAACAGAAAACgatgaaattattattcaagAATACGTTCTTCAATCACTTCCCGaattagaagaaaaagaacTTCCTGAAAGACCAACGGTTCAAAGTTATACCATCATAGCAAAAGATAATGAAGTTTCCCCCGAATTTGTGAAACCACTTAAACCGTCAACGACAAAAGCCAGTCTTAGATCCGAACTTAGAAAGTCTATGGCGGAATGTTTACGTGAACCGAGTAAAAAGAATCTTGAAGCGGGTGCAACTGAGGAAGAGATACAGATAACTAAAAATGTTGGACAGTTACTTGATATGTTGGTGGATGCTGAGACACTTGCCAAATTCGGCTGGCCCGCAGATACTGTTGAAAAGGTCCTTTGTAAAGTCATTGAAAATTGTGGATACAATATGGCTCAGACAATATTTACCGATGAATATTGCACAAGAATGAGGGAATATGTTAAGTTACTCTTCACTGTTGTGATACAAAATGATACTATAAAAGAACTATTGAATAATTATCCAATCGATGAGGTAATCGAGTTTgttctttcaaatgaaaatgatgacgatgatgattag
Protein Sequence: MCYEDLWKKETKPSSTIFPTIETTRSTRSKTFKEPLKTQTSIKKYLLNTNKPIRTTELENEVEFILTENEAPTEHYVLTEFKNDDEEQENEINFVLTDNFNVDNEGPVAEVTEEIQIDEEVDEDELDDDDEDDVDAMVVRTQEIVEHVCGKCYKSFRTVKALKRHIAFCVFSAELVSRREEMLKNIEKIESESLHMHKKDICFCCGDSYDTCHGGHINCADCPKTFKTQLSLERHMFLIHSENNDFPCPICNGKIRTAALLDLHIDQHMTRGKPFACKSCGKDFTRHYHLKRHLNFSTCGGKKAETMACRVCGKDFARLDNLRSHLKTHLGQGPSTKKSDYMCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCDKNFPSLVALKKHRRFHTGEKPYTCSVCNSNFAVKEVLNRHMKRHTGEKPHSCDECGKRFIQATQLKNHLRTHLRPHECSECPEKFKTRIQLEKHFKQHKSLKKKEASPILIDPNANKRRQHKQYNCEDCNLSFRTVASFLRHEQSQQHMENAKKRCQICGLELKNTKALQFHVLKYHETSTENGSPNEAETVKTENDEIIIQEYVLQSLPELEEKELPERPTVQSYTIIAKDNEVSPEFVKPLKPSTTKASLRSELRKSMAECLREPSKKNLEAGATEEEIQITKNVGQLLDMLVDAETLAKFGWPADTVEKVLCKVIENCGYNMAQTIFTDEYCTRMREYVKLLFTVVIQNDTIKELLNNYPIDEVIEFVLSNENDDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00694875;
90% Identity: -
80% Identity: -