Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:60183668-60186884[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.8e-06 0.00026 22.3 0.7 1 23 10 32 10 32 0.97

2 15 3e-05 0.0046 18.4 0.4 1 23 38 60 38 60 0.97

3 15 8.4e-05 0.013 17.0 1.4 1 23 66 88 66 88 0.97

4 15 0.00068 0.1 14.1 4.1 3 23 96 116 94 116 0.98

5 15 0.0001 0.016 16.7 4.6 1 23 122 144 122 144 0.99

6 15 0.4 60 5.4 1.7 1 21 240 260 240 261 0.93

7 15 1.7e-05 0.0025 19.2 0.3 1 23 269 293 269 293 0.98

8 15 0.0041 0.61 11.7 0.2 2 23 295 317 294 317 0.88

9 15 0.00032 0.048 15.2 1.0 1 23 323 347 323 347 0.96

10 15 5.3e-06 0.0008 20.8 6.3 1 23 353 375 353 375 0.99

11 15 4.2e-07 6.3e-05 24.2 0.8 1 23 381 403 381 403 0.99

12 15 0.0001 0.016 16.7 0.1 1 23 409 431 409 431 0.98

13 15 0.0039 0.59 11.7 0.2 1 23 437 459 437 459 0.97

14 15 6.6e-05 0.0099 17.3 4.7 1 23 465 487 465 487 0.99

15 15 3.4e-05 0.0051 18.2 1.5 3 23 495 516 493 516 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.8e-06	0.00026	22.3	0.7	1	23	10	32	10	32	0.97
2	15	3e-05	0.0046	18.4	0.4	1	23	38	60	38	60	0.97
3	15	8.4e-05	0.013	17.0	1.4	1	23	66	88	66	88	0.97
4	15	0.00068	0.1	14.1	4.1	3	23	96	116	94	116	0.98
5	15	0.0001	0.016	16.7	4.6	1	23	122	144	122	144	0.99
6	15	0.4	60	5.4	1.7	1	21	240	260	240	261	0.93
7	15	1.7e-05	0.0025	19.2	0.3	1	23	269	293	269	293	0.98
8	15	0.0041	0.61	11.7	0.2	2	23	295	317	294	317	0.88
9	15	0.00032	0.048	15.2	1.0	1	23	323	347	323	347	0.96
10	15	5.3e-06	0.0008	20.8	6.3	1	23	353	375	353	375	0.99
11	15	4.2e-07	6.3e-05	24.2	0.8	1	23	381	403	381	403	0.99
12	15	0.0001	0.016	16.7	0.1	1	23	409	431	409	431	0.98
13	15	0.0039	0.59	11.7	0.2	1	23	437	459	437	459	0.97
14	15	6.6e-05	0.0099	17.3	4.7	1	23	465	487	465	487	0.99
15	15	3.4e-05	0.0051	18.2	1.5	3	23	495	516	493	516	0.97

Sequence Information

Coding Sequence: ATGCGAGTCCACACTGGCGAAAAACCATTCAACTGCGAACTATGTGGGAAAAACTTCCGACAGAAAGCCGCTCTAAAGACCCATTTATTGAATCATACGAAAATTAAACCATTCAAGTGTGGTCAGTGTGATCGAGCTTTTGTTACTCAAAAATATCTTTCAGCTCATTCTTTGATTCATTCCTGTGAAAGGCCCTTCAACTGTGAGGTCTGCAATAGATCATTTGTATCTGAGAAAACATTGAAATATCACAGAGCGCGACATACCAGGGGATATCCATTTGGGTGTGATATTTGTGAGATGCGGTTCTGCTATATGCATCTCCTGCGACGACACATGCTTACTCACACTGGAGAAAAGCCATTCAAATGTAAATATTGTGAAAAAAGCTTTAGACAAAGACACGAATCTGTTGTTCATATGCAAACACATCCCGAAGCCAATGGTGACAAAGATAAGCCATCACTCCAAAAAGTGCTCGAACTTATAAGCTCCCTGCCCCGAGAAGGAGACATGTTTGAATACAAAGATCAACAGATACCATCGTCAAACCACATCAACGAAAACAAATCTATTGAATGTTCGTCTAGTGTTGGCATCACAGAACCATCTAAACAACCGCATattgataatgaaattgaaaaaagtttaaatactGAAGACTTATCAGAAATCAATATTAAACCAGAACCAACGGCAATGGAGTTTCTTAAAAAGTTTATATGCAAATGTTGCGGTGCTCGCTTTGCTTTGCAAAATACGTTGAGTCATCATGTGCGACAAAATAAATGTTCTCAAGAGCATTTTACATGCCCAAATGCGAAGTGTAAAAAGGTGTTTGCCTCTCAAGAGAAACTTGATTCGCATATTCTTACTCACACATATTGTGATTTATGTGGCCAATCGTTTAACAATAGCGAAGAAATCGAAATGCATAAAGCAGAACAACACAATTTGAAGGTAAAACATCCGTGCCCGCATCCAAATTGCAATAAAGcTTTCTATAAAGGAGGACAACTCGAAAAGCATATTGAAACccacaatataaaaaaagaattccagTGCACGCTATGTGATAAAAGCTTTCATCGAAAATTCTATCTCACACAACACATGAATCGTCATACTAAAACGCGGCCTTTTCAGTGTGAACAATGTTCAAAAGCATTTTATAGCTCTGGGGAACTTCAAAGGCATATAATGCGACACACTGGCGATCGTCCGTTCCCATGTGATATGTGTGAAAAAACATATCCATTAGCAAGCGAACTAAGAGTTCACAAGCAATCACACTCAGGCGAAAGACCATTTGCTTGTGAATTTTGTCCAATGCGATTTGGATTTGCAAATGTTCTCAGAAAACATTTGATAACTCACACTGGTGAAAGGTCATTTAAGTGTAACATCTGCGGCCGAGGATTTGTCCACAAGCAAAATTGCGAAGACCATATGAAAACACATTCCGGAGAGAAAGAATACGGCTGCGAGATTTGTAACTCAAGATACTATACAAAAGATTCTTTACGCAAACATATgagaaaaaatcacaaaaatgaTGCACTAACTGAAGAAAATGTTAATGAAGGTATGAGTTAA
Protein Sequence: MRVHTGEKPFNCELCGKNFRQKAALKTHLLNHTKIKPFKCGQCDRAFVTQKYLSAHSLIHSCERPFNCEVCNRSFVSEKTLKYHRARHTRGYPFGCDICEMRFCYMHLLRRHMLTHTGEKPFKCKYCEKSFRQRHESVVHMQTHPEANGDKDKPSLQKVLELISSLPREGDMFEYKDQQIPSSNHINENKSIECSSSVGITEPSKQPHIDNEIEKSLNTEDLSEINIKPEPTAMEFLKKFICKCCGARFALQNTLSHHVRQNKCSQEHFTCPNAKCKKVFASQEKLDSHILTHTYCDLCGQSFNNSEEIEMHKAEQHNLKVKHPCPHPNCNKAFYKGGQLEKHIETHNIKKEFQCTLCDKSFHRKFYLTQHMNRHTKTRPFQCEQCSKAFYSSGELQRHIMRHTGDRPFPCDMCEKTYPLASELRVHKQSHSGERPFACEFCPMRFGFANVLRKHLITHTGERSFKCNICGRGFVHKQNCEDHMKTHSGEKEYGCEICNSRYYTKDSLRKHMRKNHKNDALTEENVNEGMS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01318424;
90% Identity: -
80% Identity: -