Svit007367.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:80319185-80328212[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0019 0.28 12.7 3.3 1 23 484 506 484 506 0.98 2 28 4.3e-06 0.00065 21.0 1.1 1 23 513 535 513 535 0.97 3 28 0.00025 0.037 15.5 1.6 1 20 654 673 654 677 0.91 4 28 6 9.1e+02 1.7 6.4 1 23 684 706 684 706 0.96 5 28 2.1 3.1e+02 3.2 0.3 1 21 714 734 714 735 0.91 6 28 0.017 2.6 9.7 0.1 3 22 747 766 745 766 0.91 7 28 5e-06 0.00075 20.9 0.9 2 23 779 800 778 800 0.97 8 28 0.00024 0.036 15.6 1.8 1 23 807 829 807 829 0.96 9 28 0.29 44 5.9 0.3 3 23 844 864 842 864 0.93 10 28 0.024 3.6 9.3 0.7 1 23 941 964 941 964 0.96 11 28 0.42 62 5.4 0.4 1 21 973 993 973 994 0.93 12 28 6.4 9.6e+02 1.6 0.3 3 20 1005 1022 1004 1024 0.88 13 28 0.005 0.75 11.4 2.7 2 23 1035 1056 1034 1056 0.98 14 28 2.3e-05 0.0035 18.8 0.7 1 23 1063 1085 1063 1085 0.98 15 28 0.0042 0.63 11.7 2.7 1 23 1233 1256 1233 1256 0.98 16 28 0.0063 0.94 11.1 1.5 1 23 1293 1316 1293 1316 0.96 17 28 0.035 5.2 8.8 3.6 1 23 1326 1348 1326 1348 0.96 18 28 4.3e-06 0.00065 21.0 1.0 1 23 1355 1377 1355 1377 0.98 19 28 0.0022 0.33 12.5 0.1 2 23 1401 1423 1401 1423 0.96 20 28 0.00047 0.071 14.6 0.7 1 23 1464 1487 1464 1487 0.97 21 28 0.12 18 7.1 0.7 1 23 1524 1547 1524 1547 0.91 22 28 0.0006 0.09 14.3 1.9 1 20 1553 1572 1553 1573 0.95 23 28 0.00014 0.02 16.3 1.9 1 23 1583 1605 1583 1605 0.98 24 28 2e-05 0.0031 18.9 0.3 2 23 1627 1648 1626 1648 0.95 25 28 0.00031 0.047 15.2 3.3 1 23 1654 1676 1654 1676 0.99 26 28 9e-07 0.00014 23.2 3.4 1 23 1682 1704 1682 1704 0.98 27 28 7.7e-07 0.00012 23.4 2.4 1 23 1710 1732 1710 1732 0.99 28 28 0.00032 0.048 15.2 0.2 1 23 1738 1762 1738 1762 0.93
Sequence Information
- Coding Sequence
- ATGGAGACTTCACCTATATTAGTGGACATATCGGTGACAGACTACGGTGCGATTTCTGGAAAATGGATAGATTACGTAAATCATTTCAAAGTTGAGCAAAACATATGTTTAGACAATATGCCAATTAAGTATGCAGAACCATTGGTAGAAGACCAAATTCTTGATGCGCACATATCGTTAAATGAGTTAATTATGGTGATCCAACAAGCAAAACCGGGTAAAGCTCCAGGACCAGATCGTGTTTCAACAGAATTATACAAAAACGCACCAATGCAATTCCTTCGAAGAATTTGTGAAAGTTTTAACTTCATTTTAACACTGCCCAGGTACCTGACTCTTACAAATGCAATAGCAAAAATCTTTACAGCAGTGCTATTGCAACGATTAACAAAATGGGTAGACGAAAATAGACACCTTAGTGTGTATCAATCAGGTTTCCGTTCAGGTTTCTCGACAACTGATAATATTTTAGTGATGAATACAATTAGTCAGGACTTCCAACTCCGTCAACGCAAATTATACATTTTCTTCGTAGATTTCAAGGCAGCCTTCGACACTATAGATAGAAAAGCTCTATGCTATAAATTAAGCCAAAAGCTTCAGAAtgACGATATAACATCTTATCTACCCGCCGGAATAACCATAGCTAATACTGTCGTAAAATGTCTTCTGTACGCTGATGATCTGATCCTGCTTGCTGAATCACCTGAAAGTTTACAGCTAATGATTAATAGGCTAAACGAGTATTGCATCTTTTGGAATCTTATCAACCTTGATAAATCTAGTCATGATAGCGGGATGTACGAGAGGAAGATGTTCACAAAGAGAAAAATGGTATTGCGGCAGAGAGAATATCGAAGCAGTCAAAAGTTACAAGTACCTGGAATAGATGTAACTCCAACCTTCAATATGAAACAACATCTCACAGCAAATCTGGTCACAACTAAAAGTGCTATTAATCAAAGTTGGAATCTACTACTAAAAAAGAAAGAGGTacttaattcaaataaacacaaaGTGTATGAGGCGGTACTACGTTTAATGATGTGCTATGAAGCCCAGGTGTGGGGTTTTCAAGAATACGAAGAAGTCGAAAAACTGCAAAGATTCTAcatcaaaaaagttttccagCTCCCTATAAATACGCCAAACTACATGATTCATCTCGAAACAGTATGGTTACAACGTGTTTTAGGACTGTACGCTATTGAGAGGAACCACCCCTTCATACAAAAGTGGAAAGAACTGCTTAATCTGAATGGAACATCCTTTATCAACACCGAAACCAACTACTGCACACTCTGTAACCAACATGCGAGAGAAGACACGTTTCTTTTTATAGGCGCCTGCCCGATtaaaaaatcaaagaaagcgCTTAAGACTCGAAGCCAACGTACCAACATGAGCACAaggagcaaaacaaaaaaaaacaaatcaaaatctgGTCGTTTTGAGTGTGACCATTGTAGTAAAACGTTTGCGTGGAAAAAGGATCTATTTCGTCATGAAAAATCACATGAACCTAACACAAAGAAGTATGCGTGTCCACATTGTGATCGTCGTTTTATACGGAAAGATAAGCTGCAATCACATGTGCTAGTTCATTTGGGTGGTATTGTTAAACCACGTTGTTCAAAGGCCACTCTAGCATTCTCACGTCAATTGTATTctcaagaaaaattcaaagaaatagtATGCATGATTTGTAACTACGACAAAGCGATAACTATAAAAGAACTCTGTCAGCATATAAGTTTACACGATATGCAACAATCTGAATGTTTTGAGAATAGTGAATGTGTGAAGAGGTTCTACCCTGATAAAAACTTGCAAGAGGTCATGACACTTATAGCTAATCAAATAGAACAAAATGAATTTGGAAAACTACATTCCATTGTCAATGCAAATGGGTTTGAGATGGGTATCAATGACTCAGATGAGAGCGATGCAGAAATTTCTTATACATGCGAAATTTGCAACGAGTCATTCAATCGAAAGCATAAACTTATAACACATTCATTTGCTGGACATACAGTTGATGAATGCTTATATAAATGCGAGAAGTGTAAACTGGAATTCACTTGCAAAGAAGTGTTCGAGAGTCATCTGAAACACCATTGTAACAATGTTGACAAAGAGTTCCACTGTGAAAACTGTCCAGCTGGATTCGTGTGGCCTCAAAATTTGGCGAATCACAAGTGTATCAAAGAAAACGAGTCTCTTAAAGACAAAACTGTGTGCGAACCTTGCGGAGAAGTATTCGCCACTCAAAAGGCTTTGCGTCTTCATAAAAAGACTAAATGTGGCACAGTAGAGCTTGACAAAGGGAGCACAACATGTGAAATTTGCGATAAAGTATTTAGTTTCCCAAGAGATCTGAGAAAACATAAGAAAATTCATATTCCGGACGGTAAGTCTCATGACTGTTCTGTATGCGGCGAAAAATTCCTTCGTTCGGATAATCTCCGAAATCATTTGAAGTCGCACACCAGTAAATTTGAAAGGCCGTTAGTAGCTAAGAAATTAATATGTATGCTCTGCGGCGACAAATTCACAACCATAGGTAGCCTTAGATACCATTTGTTTAACCATTCCGATGGCCAAACTGATATTGACTTCGATAACTCCGGTTTCGTTTTAAACTTTTATCCTGGCGTGGGCAAAGAAGTAATTTCAGATTACATAAAGAATTGTTTTAATGAGCAAAAACTTTCGCAATTGTACTTGGCGGTGAATAAAATTGGTCTCGAAATGACATTGAGTGATTCTGATAGTGATGACGATGAACCCTACAAAGACCAAGAAACGCCTTCCAAAAGTTACGTATGTGAGCTGTGCAATGTGAAATTCCCACGTCGACAAGCAATTCTTCAGCATCAACATTCTGAACATGATTCAAAAGAGAATAAATTTCCTCATAAATGCGTCAAGTGTGAAGACCAATTTGTATCTGCAGCCCTTTTGGAGCGTCATTTCAAAAGTGAGTGCCAAAATGATGCCAGAACTAATGCTTGCGTGAAATGTGGCATTAAATTCATTTGGAAAGAAAATTTAGTGGGTCATACTTGTTTCAAAGAAGAGAAGAGTCCGGAGGAGAATAAACAATGCGAAGTTTGTGGTAAGAAGTTTATTTGGCTGAAGGATTTGCATCGACATAAACGAAGTCACATACCTTATGAGAAGAAATTTGAGTGTCTTGTGTGTGCTAGAAAGTTCAACCGCAAGGACAACATGAGAGCTCATATGAAAGTCCATACCACAGAAAATCAAGTTAAGGATAAAGCAAAGATATCGATTAAGTGGGAACAGCAAGACGAGAATCTATGCAAACCTAACGGACATAAAGTTATTCAGTGTAAGATCTGTTTGTCAAAGCATAACACAATTAAAGATTTAACAAATCATTTGATGAGTCACAAAGATCCTGCGACCTTCAAACAAAGAGAAGCAGAGGCAAGGGAGATTTCAATGATGATATATGGCAAGCAAATGGAGATGCAAACTCTGGAAAGAGCAATTTGCAAAGATCTTGAGAAAGGTGCCAATACACGCTTCTATTCAATCACTAATGAAGCAGGTTATGAGCTAAATTTAAATGATTCGGAAACGTGTTCGGACTTCGATGcggacgatgatgatgatgatgatgacgaagacGATGATCTACTAAAAGATCGGAAACGTGTCCTCAAGGGCTACAACTGCCAAATATGTagtcaaaattttaatagaaaatttaaaatatttgagcaTCAAAGAACAGAACACCAATGGGAGGAACTGCCATACGAGTGCAACCGATGTGGTTCTAAGTATGTGTGTGAGAGAATTTATCAATTACATTTGCAAAATGATTGTGAGAATAATGAGAAACAATTCAAATGTAAAACTTGCCCGATGAAGTTCGCTTGGAAGGAGAATCTCAAGAATCATGAGAAATATATGCATGATCAGAATCCAGCAATGCCAAAGAAACATCATTGCGATATTTGTGGAAAGAGTTTTCTATGGGTAAAAGACTTAACACGCCATCAGAAGACACATCAAACGGAAGATGAGAAATTCGAATGCACTTGGTGCTTTAGAGTCTTCATGCGTAGAGATAATCTTAAGGTTCATATGAAAGTTCACCAGAACGCTACACACATTCTGTTGCCAGACATCTACTACCTTGCTCGACCCAACGGTTCAAAAGTTGCACAATGCAAACTTTGTGATCAGCAGTATACAAACATATCTGATTTAGCAGAACACATTCAAAATGGGCATATTAAATTGCAGATGCTCAGCATCACTCCCAACCCCGCTAGCTATTCAATAACAAACGCTTTGGGTTATGAGATGGATATAAACGATTCCGAAACAGAGCGCGAGGGTGATGATGAGAAGTACGTTTGTGAAATTTGTGACGCTCGGTATAACCGTCGCTTTAAATTACTGCAACATCAGCAATCGCTACATTACTCTGATAACATTCCTCACAAGTGTATTGATTGCAGTTTCAAATGCGTCTCAGAGCTTGTGCTGAATTATCATATGCGAACGCAGTGTATGAATCTTGTCAAGCAGTTCCGCTGCAGCAAGTGCACTATGCGTTTTATGTGGAAGGAGAACCTCGAGAATCATGAGAGTTTAATACATGATGGTAAGCGAAAACACACTTGTACGGTTTGCAAAAAAGATTTCGCGACGCAGCATGACCTGAGAAATCACACCGAATGCAAAGCCCCGGCAGATGAAAAACTATTCAAATGTGATTTGTGTGATCGtaaatataatcgaaaagatcGACTCATGAAACATGCAAAGGTTCATACAGCAGGGGGTAAAGAAACAAAAGCAAAGCGTATTAAAACCGAAGCATCGGACAAAAAATTCTTATGTGCATTTTGTGGGAAGGAAGTATCCAGTTCGTCCAATCTTGTTATACACATGAGACGGCACACAGGTGAGAAGCCATTTAAGTGTGAATTCTGTAATAAGGGTTTTCCAAGATCGTCAGATTTGGCTTGTCACAGACGAACGCACACTGGAGAAAGACCACATAAGTGCACAGTGTGTGAAAAGGCATTCTCTCGCTCTTACAAACTCCAGACTCATATGCGAATTCATTCTGGGGAGAGGCCTTACAAGTGCACTTATTGTGAGAAAAGCTTTACACAATCTAATGACTTGACACTCCATGTACGTCGTCATACTGGTGAAAGACCCTACGTCTGTGAAACATGTGGCGAAAGATTTATACAAGGAACTGCACTTAAAAACCATCGAAGAATGCGTGGACATTATGAAATTTAA
- Protein Sequence
- METSPILVDISVTDYGAISGKWIDYVNHFKVEQNICLDNMPIKYAEPLVEDQILDAHISLNELIMVIQQAKPGKAPGPDRVSTELYKNAPMQFLRRICESFNFILTLPRYLTLTNAIAKIFTAVLLQRLTKWVDENRHLSVYQSGFRSGFSTTDNILVMNTISQDFQLRQRKLYIFFVDFKAAFDTIDRKALCYKLSQKLQNDDITSYLPAGITIANTVVKCLLYADDLILLAESPESLQLMINRLNEYCIFWNLINLDKSSHDSGMYERKMFTKRKMVLRQREYRSSQKLQVPGIDVTPTFNMKQHLTANLVTTKSAINQSWNLLLKKKEVLNSNKHKVYEAVLRLMMCYEAQVWGFQEYEEVEKLQRFYIKKVFQLPINTPNYMIHLETVWLQRVLGLYAIERNHPFIQKWKELLNLNGTSFINTETNYCTLCNQHAREDTFLFIGACPIKKSKKALKTRSQRTNMSTRSKTKKNKSKSGRFECDHCSKTFAWKKDLFRHEKSHEPNTKKYACPHCDRRFIRKDKLQSHVLVHLGGIVKPRCSKATLAFSRQLYSQEKFKEIVCMICNYDKAITIKELCQHISLHDMQQSECFENSECVKRFYPDKNLQEVMTLIANQIEQNEFGKLHSIVNANGFEMGINDSDESDAEISYTCEICNESFNRKHKLITHSFAGHTVDECLYKCEKCKLEFTCKEVFESHLKHHCNNVDKEFHCENCPAGFVWPQNLANHKCIKENESLKDKTVCEPCGEVFATQKALRLHKKTKCGTVELDKGSTTCEICDKVFSFPRDLRKHKKIHIPDGKSHDCSVCGEKFLRSDNLRNHLKSHTSKFERPLVAKKLICMLCGDKFTTIGSLRYHLFNHSDGQTDIDFDNSGFVLNFYPGVGKEVISDYIKNCFNEQKLSQLYLAVNKIGLEMTLSDSDSDDDEPYKDQETPSKSYVCELCNVKFPRRQAILQHQHSEHDSKENKFPHKCVKCEDQFVSAALLERHFKSECQNDARTNACVKCGIKFIWKENLVGHTCFKEEKSPEENKQCEVCGKKFIWLKDLHRHKRSHIPYEKKFECLVCARKFNRKDNMRAHMKVHTTENQVKDKAKISIKWEQQDENLCKPNGHKVIQCKICLSKHNTIKDLTNHLMSHKDPATFKQREAEAREISMMIYGKQMEMQTLERAICKDLEKGANTRFYSITNEAGYELNLNDSETCSDFDADDDDDDDDEDDDLLKDRKRVLKGYNCQICSQNFNRKFKIFEHQRTEHQWEELPYECNRCGSKYVCERIYQLHLQNDCENNEKQFKCKTCPMKFAWKENLKNHEKYMHDQNPAMPKKHHCDICGKSFLWVKDLTRHQKTHQTEDEKFECTWCFRVFMRRDNLKVHMKVHQNATHILLPDIYYLARPNGSKVAQCKLCDQQYTNISDLAEHIQNGHIKLQMLSITPNPASYSITNALGYEMDINDSETEREGDDEKYVCEICDARYNRRFKLLQHQQSLHYSDNIPHKCIDCSFKCVSELVLNYHMRTQCMNLVKQFRCSKCTMRFMWKENLENHESLIHDGKRKHTCTVCKKDFATQHDLRNHTECKAPADEKLFKCDLCDRKYNRKDRLMKHAKVHTAGGKETKAKRIKTEASDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLACHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYVCETCGERFIQGTALKNHRRMRGHYEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -