Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:95775925-95779000[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0039 0.58 11.8 0.5 2 23 118 140 117 140 0.96

2 20 0.0012 0.18 13.3 0.7 1 23 146 168 146 168 0.98

3 20 0.00011 0.017 16.6 1.2 2 23 177 198 176 198 0.98

4 20 0.0051 0.77 11.4 0.3 2 23 205 227 204 227 0.95

5 20 0.00038 0.057 14.9 2.9 1 19 259 277 259 279 0.97

6 20 5e-07 7.6e-05 24.0 2.5 1 23 287 309 287 309 0.98

7 20 4.2e-07 6.3e-05 24.2 1.8 1 23 315 338 315 338 0.98

8 20 0.14 21 6.8 2.4 1 23 349 372 349 372 0.95

9 20 3.3e-06 0.0005 21.4 3.5 3 23 467 487 465 487 0.97

10 20 1.6e-05 0.0023 19.3 1.7 1 23 493 515 493 515 0.99

11 20 0.0026 0.39 12.3 0.1 1 23 527 551 527 551 0.97

12 20 0.002 0.3 12.7 1.3 1 20 557 576 557 578 0.93

13 20 0.33 49 5.7 3.4 1 23 616 638 616 638 0.97

14 20 2.8e-06 0.00043 21.6 1.4 1 23 644 666 644 666 0.98

15 20 5.6e-05 0.0084 17.5 1.7 1 23 672 694 672 694 0.96

16 20 3e-05 0.0045 18.4 2.3 1 23 700 722 700 722 0.97

17 20 1e-07 1.6e-05 26.1 2.2 1 23 831 853 831 853 0.98

18 20 0.0017 0.26 12.9 4.5 1 23 859 881 859 881 0.99

19 20 1.9e-05 0.0028 19.0 0.4 1 23 888 910 888 910 0.97

20 20 0.00073 0.11 14.0 4.3 1 23 916 938 916 939 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0039	0.58	11.8	0.5	2	23	118	140	117	140	0.96
2	20	0.0012	0.18	13.3	0.7	1	23	146	168	146	168	0.98
3	20	0.00011	0.017	16.6	1.2	2	23	177	198	176	198	0.98
4	20	0.0051	0.77	11.4	0.3	2	23	205	227	204	227	0.95
5	20	0.00038	0.057	14.9	2.9	1	19	259	277	259	279	0.97
6	20	5e-07	7.6e-05	24.0	2.5	1	23	287	309	287	309	0.98
7	20	4.2e-07	6.3e-05	24.2	1.8	1	23	315	338	315	338	0.98
8	20	0.14	21	6.8	2.4	1	23	349	372	349	372	0.95
9	20	3.3e-06	0.0005	21.4	3.5	3	23	467	487	465	487	0.97
10	20	1.6e-05	0.0023	19.3	1.7	1	23	493	515	493	515	0.99
11	20	0.0026	0.39	12.3	0.1	1	23	527	551	527	551	0.97
12	20	0.002	0.3	12.7	1.3	1	20	557	576	557	578	0.93
13	20	0.33	49	5.7	3.4	1	23	616	638	616	638	0.97
14	20	2.8e-06	0.00043	21.6	1.4	1	23	644	666	644	666	0.98
15	20	5.6e-05	0.0084	17.5	1.7	1	23	672	694	672	694	0.96
16	20	3e-05	0.0045	18.4	2.3	1	23	700	722	700	722	0.97
17	20	1e-07	1.6e-05	26.1	2.2	1	23	831	853	831	853	0.98
18	20	0.0017	0.26	12.9	4.5	1	23	859	881	859	881	0.99
19	20	1.9e-05	0.0028	19.0	0.4	1	23	888	910	888	910	0.97
20	20	0.00073	0.11	14.0	4.3	1	23	916	938	916	939	0.95

Sequence Information

Coding Sequence: atgcaaaacaacACTGATTTGTTTACTCCCCTACCAGTGGAGTTATCCACACCAAATGGACTCCTCTATCAATTCAACGAAGAGAAATTCCTCAAAAATCATGACTTTTATACATTTGAGATGGATTGTTTTACTGTTCCTGAAATTACAGACATTCCACCTCCGATAGTTGGTTTAAGTCCAATTCCAGAAGAAACTAGTTGCTCGATGATGGTTCATTCATTGGAACCTTTATTTTCTCCTGTTGAACCAGTTCCTCTACCTACATCGTCTTCCTTGGTACCTAATTCAGTTGAAGCTGAATCTGAAGAAGAGTCAGAACCACCTATGGCAACAACGATTAAACAACTTTCGTGTGATCTATGCGAAGAGACATTCTTTTCAACTCAAGCTCTACGCCTTCACCGCCGAGTACAACACATCTCAACCAAAGAATTCCGCTGCCGCAAATGCCCAGCATCATATAATTTTGAATCGAATCTTTTTCTACATTTGGCATCCCATGTCTCAAGTTGTAGTACGAATAAGCAATGTCCTGAGTgcaaaatggttttcaaacGAATTTCCAGCTTCAAAGGTCATTTAAAGTCACACCAAACAAACGATAGAATCCAGTGTAAACGCTGTGACAAAGAGTTCGAATTAAAAGTTTACTATGAACAGCATTTGGCTAAAGCCCACAAACCTGGCAGTGACGGGACTATTGAGGAGGTTCTCTTCAAAGTGGCAAATAACACAAAATGTCGACGAACATCCAAACAGGTCAATGGCAAATATCGTTGTCAATATTGTGAGAAGAAATTCACCAAACCTTGTTTGTTGAAACGACACGAAGTTTGCCATACAGGAGCAAAACCATTTCAATGCAACCATTGCGATCAGGCATTTACCCAAAAATCATCTCTCGATAGACATATGCTCCTGCATCAGGGTGTAAAAGATTACAAATGTCCTATGTGCAGCTATAGCTTTTCCCAGAAAAACAATCTAATAACCCACATCAAACGAACTCATCCAACCAACAACGCCaatgttgaaaatatgtttgctTGTGAATTTTGTTCGTGTCTCTTTACAAAATTAAGCAGTGTCAATCGCCATCGTGCAATGATGCATCCAGAAAAAGATAATTTAACCGGTGAGAATGCAAACGACGATattgatgacgatgatgataatgtGAATGTTGCACGAGTTATGGaacaattgaaaagttttcaagaatCCATGGGAATTATGGATATGAAACCACCTGCTCTAGAACTTTCCCTAATGAAACCTCCATCACCTGGACCGATAGTCAATACAATTACAATTGTTGATACAACAAATCCAACAAAAgagaaaacattcaaaaaaatcaaagaaatcatTTACAAAGGAGAACGAACAATTGCGTGTGTTTATTGTGATAAACCATTTAAGAGGCAACATGATCTCTTGAGACATCATCGAACACACACCAAAGAAAAACCATTCCAATGTAATGTTTGCATTAAAAGTTTCTCCACAAAAACTGGCCTCAAAACACATCTCAACACACATAGCTCGTCAATGGAAACAAAAGCTGCTAGGGCTTATCAATGTGCTGTAGATGAGTGTCAGAAGCGTTTTGCATCTTTGCGGGCGTTAGATATTCACACAAAAATCCACACACATTCCATATCGTACATTTGCCCCATCTGTTCGAAAATCTTCACCTCCAAAGCTGGTTTCTCATCGCACAAACATCATACAAAAGATCAAGAATTCGATAGCATTCGCGAGTTGCTAAAGTCTCCGGTGCAAATTGAATCGAATGTCGCTGAAGAAGCTTTCAAAGCCGAAGAGTATTTGAAAAGAAGCCATCAGTGTTTTGTGTGCggcttaaaaatgcaaaaattatctCATTTGCGGCAACATGAAGCCACTCATACGGGAGAGAAACCATTTCAATGTGAAATTTGTTTTAGaacctACACTACACAAAGTTCTCTCAATCTTCATCTGAAAATCCACACAGCTGAGAAAACACACATCTGCCAAGTGTGCAATGCAAAGTTCTTCACACAATCTTTGCTTATGCGGCATATGATATCACATAGTACAGAGCGAAACTTTGCCTGTCCCTACTGCGATGAACGTTTCAAAACTAACGACAATTGCAAAAATCATATCTTAACCCATGCCCGAAGTTTATTGGCAAGTCCTGATCCTCAACCGCCGCCCTTGCCGCCTCCAGATGAATATATTATAGATCTTGATGAAATTCAAGATGAACCCGCGGTAAATTCTATCAGTCAGCAATTCATTGCAGTTGTTGAGAGTCCCAACAAGAATCTCTCTCCGAAATTCCTTCAATTAGAATtggttaaaaattgcaaaaaacataagcacaaaaatttaacaatcgAAACCCTGACGACAATAACTTCctcaccaaacaaaaaaacgtcTTCCTCCACCAAGAAGTCCTTAGCAAGATCGGTCAAACAAATCAATCAAACTGGACACAAATGCAGTGATTGTCCAAAGGTATTCTTCAAAGCCAGTGATTTACAACGTCATATACGAActcatacaaaagaaaaaccatATGAATGCAGTGTTTGTTCGAGACATTTTGCATTGAGGTGCACTTTGGTGCAACATATGAAGACACATGATGCACAGCGGGAAACGTTCGATTGTCAGGTGTGCGGAAAGAAGTATACATCGAAGAAAGTTTTGATAGTGCATTTGAGAATTCACACGGGCGAGAGACCTTTTCAGTGTGGAGTTTGTAAGAAGACGTTTCGGACATCGGGGCATAAGATTTCACATGTAAAGGCAcatcataaaaagaaaaaatag
Protein Sequence: MQNNTDLFTPLPVELSTPNGLLYQFNEEKFLKNHDFYTFEMDCFTVPEITDIPPPIVGLSPIPEETSCSMMVHSLEPLFSPVEPVPLPTSSSLVPNSVEAESEEESEPPMATTIKQLSCDLCEETFFSTQALRLHRRVQHISTKEFRCRKCPASYNFESNLFLHLASHVSSCSTNKQCPECKMVFKRISSFKGHLKSHQTNDRIQCKRCDKEFELKVYYEQHLAKAHKPGSDGTIEEVLFKVANNTKCRRTSKQVNGKYRCQYCEKKFTKPCLLKRHEVCHTGAKPFQCNHCDQAFTQKSSLDRHMLLHQGVKDYKCPMCSYSFSQKNNLITHIKRTHPTNNANVENMFACEFCSCLFTKLSSVNRHRAMMHPEKDNLTGENANDDIDDDDDNVNVARVMEQLKSFQESMGIMDMKPPALELSLMKPPSPGPIVNTITIVDTTNPTKEKTFKKIKEIIYKGERTIACVYCDKPFKRQHDLLRHHRTHTKEKPFQCNVCIKSFSTKTGLKTHLNTHSSSMETKAARAYQCAVDECQKRFASLRALDIHTKIHTHSISYICPICSKIFTSKAGFSSHKHHTKDQEFDSIRELLKSPVQIESNVAEEAFKAEEYLKRSHQCFVCGLKMQKLSHLRQHEATHTGEKPFQCEICFRTYTTQSSLNLHLKIHTAEKTHICQVCNAKFFTQSLLMRHMISHSTERNFACPYCDERFKTNDNCKNHILTHARSLLASPDPQPPPLPPPDEYIIDLDEIQDEPAVNSISQQFIAVVESPNKNLSPKFLQLELVKNCKKHKHKNLTIETLTTITSSPNKKTSSSTKKSLARSVKQINQTGHKCSDCPKVFFKASDLQRHIRTHTKEKPYECSVCSRHFALRCTLVQHMKTHDAQRETFDCQVCGKKYTSKKVLIVHLRIHTGERPFQCGVCKKTFRTSGHKISHVKAHHKKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00664262;
90% Identity: -
80% Identity: -