Svit022253.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288109.1:91144594-91158955[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 8.9 1.3e+03 1.2 0.3 2 23 230 252 229 252 0.93 2 38 0.59 89 4.9 0.0 6 23 262 279 262 279 0.98 3 38 0.18 27 6.5 0.4 1 23 285 307 285 307 0.95 4 38 1.1e-05 0.0016 19.8 1.7 1 23 313 335 313 335 0.97 5 38 0.0014 0.2 13.2 0.3 2 23 344 366 343 366 0.91 6 38 0.00097 0.15 13.7 1.2 3 23 375 395 373 395 0.94 7 38 0.0012 0.17 13.4 0.4 1 23 403 426 403 426 0.94 8 38 0.032 4.9 8.9 3.2 1 23 433 456 433 456 0.93 9 38 0.035 5.3 8.8 0.3 1 13 462 474 462 478 0.90 10 38 0.009 1.4 10.6 0.3 1 23 758 780 758 780 0.98 11 38 3.5e-05 0.0052 18.2 4.0 1 23 786 808 786 808 0.98 12 38 0.0028 0.43 12.2 1.3 1 23 814 837 814 837 0.91 13 38 0.0012 0.18 13.4 0.6 3 23 843 863 842 863 0.96 14 38 0.13 20 7.0 1.2 1 23 871 894 871 894 0.91 15 38 0.0018 0.27 12.8 0.3 3 23 903 924 901 924 0.94 16 38 0.021 3.2 9.4 0.2 1 16 930 945 930 946 0.87 17 38 0.32 49 5.7 0.2 6 23 1170 1187 1170 1187 0.98 18 38 0.00034 0.051 15.1 0.4 1 23 1193 1215 1193 1215 0.98 19 38 3e-06 0.00045 21.6 2.5 1 23 1221 1243 1221 1243 0.99 20 38 0.0021 0.31 12.6 0.6 1 22 1249 1270 1249 1272 0.90 21 38 0.0035 0.52 11.9 0.5 3 23 1280 1300 1279 1300 0.96 22 38 0.0031 0.46 12.1 0.1 2 23 1309 1331 1308 1331 0.96 23 38 0.022 3.4 9.4 0.5 1 23 1338 1361 1338 1361 0.92 24 38 0.008 1.2 10.8 0.2 1 16 1367 1382 1367 1383 0.87 25 38 0.11 16 7.2 1.5 1 23 1609 1631 1609 1631 0.97 26 38 0.0005 0.075 14.6 1.1 1 23 1637 1660 1637 1660 0.93 27 38 0.00037 0.055 15.0 1.6 1 23 1666 1689 1666 1689 0.93 28 38 0.001 0.15 13.6 2.0 3 23 1697 1717 1696 1717 0.97 29 38 0.003 0.45 12.1 4.0 1 23 1725 1748 1725 1748 0.97 30 38 0.029 4.3 9.0 0.6 1 23 1755 1778 1755 1778 0.90 31 38 0.074 11 7.7 0.3 1 16 1784 1799 1784 1800 0.88 32 38 1.7 2.6e+02 3.4 1.6 2 23 1996 2018 1995 2018 0.95 33 38 2e-05 0.0031 18.9 2.1 1 23 2050 2072 2050 2072 0.99 34 38 0.0016 0.25 12.9 3.0 1 23 2079 2101 2079 2101 0.98 35 38 0.0035 0.52 11.9 3.6 3 23 2110 2131 2108 2131 0.96 36 38 0.34 52 5.6 1.7 2 23 2140 2162 2139 2162 0.95 37 38 0.00061 0.092 14.3 0.4 3 23 2171 2192 2170 2192 0.96 38 38 4 6.1e+02 2.3 0.1 1 16 2198 2214 2198 2215 0.88
Sequence Information
- Coding Sequence
- ATGCTgtgtattttgtgtttgaaaccaCCCAACGAACCAATAAACATATTCGGAGAAAATGGTCTAAGTCTTGACATCAAAGGGATTATCTCGAAATATTTTTGGTTCAAGCCATGTGCTGAAGATTCCTATACGAGCATAATATGTTCTAATTGTTGGAATTCCCTTGATTCATTCGACAAATTCTACAAAGGCGTAGAAACAGCACATAAGCTTCTCCAACTTAATCCAAATCATTCGAAAGAATATAACAAAGCAGAAGAAGTTCATAATACTATGGCTGatgatttaaatgaatttaacaataatttgaGCACTGGAATAAAGATTGAGGTCAATGAAGACTCAACCGATCAAACATTGCAGCATGACCAAGCCGACATTACCGAAGATcctcttaaaacaaaaatagaagtcGACGAAACATGCGAAGACATCAAATATGACTCGGAATCAGAAATTCCAATTTCTCAGCTTTCTAAACAATACAAAGAAGACACAAATGTAGACTCCACAAAACCAATTACTAGCTCCGAATTCTTTAGATTCAAAAATACTAAACCTGGTGAAgatatatttcatataaaagaCGGTATATGGCTCGCTAATTCCTATGCTGAAGAAACCACTGACAAAAGAATCAGTCACGAGGAGTTTGACAAATTTATCAAGAAAAATTTGGAACTCTCTTGTGACTTGTGTCTCAAGCCTATGGTAAATTTCACAGCTCTTCAAACACACTTTCAGAAAGACCATAATGCAGCGAAAGCTTACGTCACCTGTTGCGACAAGAAATTCAACCTACGTGCGGCTTTAGTTGATCATATTCTCCTGCATAAGTTACCTAATTACTTCACATGTATTCTCTGTTCGAAAGTTCTGACGGGTCGCAAAACCCTAATTGAACACCAgaaaatacacaacaaaaaacTCATCTACCAGTGTCCTGGCTGTGACAAAAGCTTTCATCGGAAAATAAATCTTGATCGACACAAAGATGTTCACGTTGACTATTCGGAACGTACAGTTGAGTGTAGTCAGTGTGATAAGCTATTTGCTTCAAAATTCTCACTCAAACAACATATTTACGATGCGCATAAAATTGCTTGCACTAATGTAATTTGTGAATTATGTGGCAAAGTTTGTCGAGATCAACCGACTTTTCGACGTCATCAATTTGAACATACAAATgctgaaaaagaatttttcccATGTGAAATATGTGGCACTAGAATTGCGACCAAAGACGGTTTGAGGCGACATAAGAAATTTCAACATCCAAAGGatgataagaaatatttttgcaattattgtGGCCTCCAATCAACAACAGCACATGCACTGCATCGTCATGTTACCTATATGCATACCGTTGAGCCACGTTATAAATGTACGATGTGTGAAAAAGTCTTTAAGCGGGCTCTTAGACTAAAGCCAAATCAAGACGATGACAATTCCAAATTAATATGTTCCTCATGTTGGGTATCAGTAAATGCTTTCCATAAGTTCTATGAAGAAATTAAAGAAGCGCACTGTTCGTTTCAAGAAATAAAACCCACAGTGGTGGTGACTGAAGATGATTTTCAAGAAAGTGGAAATATATCCAACAACGACACTCATTTCAATGACAACAATATGTATTTGGAGGATGAAGatATTAAAATCGAAAACTTCGAATCGAGTAATTTTGCAATAGAACTACAATGCCATGTTAATCCTTTAGAAATAGCAGTTAAAAGTGATGAAAGAGACGTTGATATCAAGTCCGACTCGGAATCTGAAATGCCTTTATCTCAGTTGTCCAAACAACTTcacaaaaaggataaaaatcCGAAGACAAACAAGATTGCGGGGGTtaaattgcaaaagaaagatAGAACTTCTAACAACAACATCGGGGCAccaaaaaaagttagaaaaaaggatacaatttcaaaaaaatctaaaacagaATCTAAAGTGAGTTCCGAGAGTAAAGACACGAGTGACGAAAAACTCCACATCCACGATGGCAAATGGCTAGCTACTTGTTATGCAGAAGAAACTTATTCAAAGCCAATCAACTCTGAAGAactagataaatatttaaaacaaaacatagaaCTTTTGTGTGGAGTTTGTCAAATACCAATGGACGAATTCGCATCCCTCCATCCGCATTTCTTAAAGTATCACGACAAAACAAAACCCTTTGTCTCTTGTTGTGGAAGAAAACTTAAATATCGAGCTCACATAATCGATCATAGTTTAGTGCATAAGATACCTGAGTATTTTAAGTGTGTGGAATGCTCCAAAGTTTGGCCATCTCGTCGCAATCTGAAGGAACACTTATCAATacacaataaaaatttcatataccACTGCGACAAATGTAACAAGAGTTTTTGCAGTAAGCCTGCTCTCGAACGTCACCAGGAAGTGCACTTTGTCGAACGGCCATTTAAATGTGACGAGTGTGATAAGTTCTACGCAACAGAATATCGACTTAAGCAACATGCCTATAATATGCatcaatataagaaaatttgtgAACAATGTGGTCAAGTATTTCGTGAGAAGGAAACATTTGTTCGGCATCTATTCAAACATACAAATGAACCTAAGccattttttgaatgcaaaatatGCGGCGCTAGACTTTCGAGTAAGAAAATTCTTCAGAAGCATAACAAGTTTCAGCATTTGGAAGATGCAATCGAACAAAATTGTGAACTGTGTGGGATCACAGTGAAAAACTTGCAAGCTCTAAAACGACATATGAATTTCGTTCATAAATATCAGCGGGAACATAAGTGTTCAATGTGCGACAAGGCATTTAAGAGGGCGCTTACACTTAAgCCAAATGAAGATGATTCGAGTTTGAATTCCATTTGTACTATTTGTTGGACAGCTTTAGAATCATTTCACAAATTCTATGAAGATATCAAATCAGCTCATTGTTCACACATGAAAATTAAAGCTGCAAATAATTATAAAGATAAGGAAGTAGAAGCCAATTCAAGTGATTACCATTTAGATGATTATAGCGGTATCCTGTATCAAGcaataaaaGTTGAACTAAAAGAGGAAACTACTAATGATCGAACAGAGCCAGCTACCCCTGAAAGTATAAAATGTCCAATAGAATTGGATGTAAAATATGATCAGGACGAAAATGATAGAGAAGATGATATGGAGGACTCGGATTTAGAAATCCCGCTTTCCAAACTGGCCAAAGATGACCAAGAAGATAAAGAAAGCCTTGAAATTAGTTCTGGGCCCGAATCAGTAAGCCAAAGAATAAACACCACTGACGACCAAAAGATTCACATTCAAGACGGTAAATGGCTTGCCAAATGTTTTGGCGAAGAAACCACCGATAAGCCCATTTGTCACAAAGAGTTGgataagtttttaaaagttaatattgAGCTTACATGCGAAATATGTCGAATACCAATGATAGACTTTCTAACACTCCAAAAACACTTCAAAGATACCCATACTTCAAAGGCGTTTGTAACTTGTTGCGATAAAAAGTTCTCACTACGTAGTCGTTTGGTGGATCACATTTTACTACACAAGCTACCTGCCTACTTTACATGTGTGGTTTGCTCCAAGCTCTTGTCTTCTCGAGAAAACTTAAGAAAACACATGATTGTGCATGATAAGAAATATGACTTTCAATGTGATAAGTGCGATAAAACTTTCTACCGCAAACAACTGCTTGATCGTCACATGGATACCCATGTATTGgatcgaaaatttaaatgtgACGTATGTGATAAACTCTTTACATCAAAATTTTCTCTTGGACAACACGTCTATGGTGTTCATAAAGGAGGCTATAAGAAAATTTGCGAACAATGTGGCAAAGTTTCTCGTGATCACGAAGCTTTCGTTCGTCATCAATTACTACACACAAATCAACCGCAACCATATGTGGAATGTCCCCAATGTGGTATCAAACTTGTTGATAAAAATGGCTTACGTAAACATGTGCAATCTCAGCATCCAGAAGAAATACGTGAACACGTTTGTACTGAGTGCGGAATTATTACGAATACAATATTTGCATTGCGACGACATATTACGTTTATGCACAAGAGAAAACGTGATCATAAGTGTCCAGTGTGTGATAAAGCTTTTAAACGAGCGCTCACTTTAAAGTTCTATGAAGAAATTGAGGAAACCCATCGTTTGCTTAATGAATTAAATGCTGCAACTGAAAATAAGTTTCAAGATGGAATCGAAACAAATGATGTTCATTTAGATAAAAACGAAGATGCCTTGTATCAAGgcattaaaattgaattgaatgatgAGCCTAATATACAACATCCACTTGACGTGGACTGTGtagaagataaaaatattaaatgccCGTTGGAAATTGAAGTAAAATCCGATCAAATTGAATTTGTGGGAGGTGCTGAGATGGATCAAGAGGAATCTGATTCGGAAATACCACTATCAAAATTGACTGTTCAGCTGCAACATAAGGAGGAAAGTTCAGAAAGCAATTCCAGTACGAAATGGGATGACAAAGATAAAAACACCAAGGAAGGAAAGGTCCACATCCATGAAGGAAAATGGCTAGCCACTTGCTTTGGCGAAGAAACTGTTACTAAACCGATAAGTCACCACGAGTTGGataaatttctcaaattaaaCACGGTCCTTACTTGCGAAATATGTCGCATTCCAATGGAAGATTTTCTAACCCTCCAGACGCACTTCAAAGATTCTCATACTGTTAAACCATTTGTAACTTGTTGCGATAAAAAATTCGAACTTCGCTGTCGTTTGGTTGACCACATTATATTGCACCAGCTGCCAAACTACTTTACATGTGTTGTCTGTTCTAAAGTCTTATCGTGCCGccttaatttaagaaaacacaTGGTTGTTCACGACAAGAAAGAAGCTTTCCAATGTGATCAATGTGAAAAGACCTTCTACCGAAAAGAGGTCTTTAATCGTCACGTCTTGGATATACACACTTTAgatcgaaaatttaaatgtgAAGAATGCGATAAACTCTTTGCTTCGAAATGTTCACTTAATACACACATCTATGGTGTTCATAAGGGCCgatataagaaaatttgtgAGCAATGCGGCAAGGTATCTTGTGATCAAGAAACTTTTCTCCGTCACCAAATGAAGCATTCTAATAAACCTCAAACATATTTTGAATGTCCAAAATGTAGTGTCAAACTCTCAACAAAACACGGATTACGGCATCACATTAGGTATCAGCATTCGGAAGACACCAGAGAACATGTTTGCAATGTTTGCGGAAACAAATCGACAAGTGAAGCGGCATTGAAACGACATGTTACGTTTATGCACAAGTATAAACGCGATTTCAAATGTTCGTTGTGTGAAAAGGCTTTTAAAAGGGCTCTTACTTTGAAGcCCAATGCAGAGGTTGACCATGCCAAAGCTATTTGCTATTCCTGTTGGAACACAGTGCAAtcgtttcataaattttataaaaccatCGAAGAAGCTCACACTAAATTTACAGCATACCTTAAACTTCCCGATAAGGAAAGTGATCATGAATCGTCTCATTTTGAGTCTTTTTCTGATTTGTTTACAACAGTTGTGAAACAAGAAAATTCTGAAGAGACTACAAAAGTTGAGCTATCGGGATCTCCAGAAAATGCGTCACAAAATCACGAAGAAAATGAATTCCTGAATTACAACTCTAACAATGAATCAGAAGTTCCTCACATCAAGTTAGACAGTAACAAAAGTTccttgaaaaacaataaatatgaagAAAGTCAAGGCAATGAAACTGACTCGAAAGATGCTTCTTCTGCTGAAGACAATGACAGTGAACAACAAGATTACGATTCGGACAGCGATAGCGAATACAATACTCCTAAGAAAAAACCGAAAGTAAAAGGTTCTTCGTCTATTAAAAATGAGTTCGGGAAGAATAGAATACCATGTAAGGAGTTTGAtagttttattaagaaaaatattgaactttcGTGCAGTTTGTGCAACGAATCTATAGAAAACTTCGCCTGCCTCAAGGAGCACTTCAAAAAAGTCCACAAAATAGATGCCTTTGTAACCTGCTGTAAAAAACAGTGGACCAGTCGCTTTTCTCTAGTACATCACTTGCTTTTGCATCAAGATCCAGATTTATACAAGTGTAAAAAATGTGGTCGCGTTCTGGCTAATAACAGGTCTTTTAAAAATCACATGCAATCCCACGTAACCCAAGAACGAATTCATGAATGCACGAAATGTAGAAAAAAGTTTGCTTCCATACCGAAACTAGAGAAACATTTGAAATCACACATCCGAACACATATTGATCAGATATGTGAACAATGTGGTAAAGTTTGCCATAGCAAGCAGAGCCTTAGTGCTCACCAGAAGCGAGAGCATATGGGTTTTGTTAAGCAAAGAGTTCAGTGTACGAAATGCGGGGCATATTTATCGGACTCATCAACTTTACATTTTCATATGAAGTATCAACATCCAAAAACTAAAGTTGTAAATGCTTGCCACCTCTGTGGGAAGATATCGGCGACTGCATATGGATTGAAGAGACATATACAATATATGCATACGATGGAACGTGTTCATAAGTGTACTATATGTGAGGACAAGGCATTCAAGACAGCTCAGATGCTTAGGgGAACAATCTTTGTTGCCGTTACTTTGTCAGTTATGTAG
- Protein Sequence
- MLCILCLKPPNEPINIFGENGLSLDIKGIISKYFWFKPCAEDSYTSIICSNCWNSLDSFDKFYKGVETAHKLLQLNPNHSKEYNKAEEVHNTMADDLNEFNNNLSTGIKIEVNEDSTDQTLQHDQADITEDPLKTKIEVDETCEDIKYDSESEIPISQLSKQYKEDTNVDSTKPITSSEFFRFKNTKPGEDIFHIKDGIWLANSYAEETTDKRISHEEFDKFIKKNLELSCDLCLKPMVNFTALQTHFQKDHNAAKAYVTCCDKKFNLRAALVDHILLHKLPNYFTCILCSKVLTGRKTLIEHQKIHNKKLIYQCPGCDKSFHRKINLDRHKDVHVDYSERTVECSQCDKLFASKFSLKQHIYDAHKIACTNVICELCGKVCRDQPTFRRHQFEHTNAEKEFFPCEICGTRIATKDGLRRHKKFQHPKDDKKYFCNYCGLQSTTAHALHRHVTYMHTVEPRYKCTMCEKVFKRALRLKPNQDDDNSKLICSSCWVSVNAFHKFYEEIKEAHCSFQEIKPTVVVTEDDFQESGNISNNDTHFNDNNMYLEDEDIKIENFESSNFAIELQCHVNPLEIAVKSDERDVDIKSDSESEMPLSQLSKQLHKKDKNPKTNKIAGVKLQKKDRTSNNNIGAPKKVRKKDTISKKSKTESKVSSESKDTSDEKLHIHDGKWLATCYAEETYSKPINSEELDKYLKQNIELLCGVCQIPMDEFASLHPHFLKYHDKTKPFVSCCGRKLKYRAHIIDHSLVHKIPEYFKCVECSKVWPSRRNLKEHLSIHNKNFIYHCDKCNKSFCSKPALERHQEVHFVERPFKCDECDKFYATEYRLKQHAYNMHQYKKICEQCGQVFREKETFVRHLFKHTNEPKPFFECKICGARLSSKKILQKHNKFQHLEDAIEQNCELCGITVKNLQALKRHMNFVHKYQREHKCSMCDKAFKRALTLKPNEDDSSLNSICTICWTALESFHKFYEDIKSAHCSHMKIKAANNYKDKEVEANSSDYHLDDYSGILYQAIKVELKEETTNDRTEPATPESIKCPIELDVKYDQDENDREDDMEDSDLEIPLSKLAKDDQEDKESLEISSGPESVSQRINTTDDQKIHIQDGKWLAKCFGEETTDKPICHKELDKFLKVNIELTCEICRIPMIDFLTLQKHFKDTHTSKAFVTCCDKKFSLRSRLVDHILLHKLPAYFTCVVCSKLLSSRENLRKHMIVHDKKYDFQCDKCDKTFYRKQLLDRHMDTHVLDRKFKCDVCDKLFTSKFSLGQHVYGVHKGGYKKICEQCGKVSRDHEAFVRHQLLHTNQPQPYVECPQCGIKLVDKNGLRKHVQSQHPEEIREHVCTECGIITNTIFALRRHITFMHKRKRDHKCPVCDKAFKRALTLKFYEEIEETHRLLNELNAATENKFQDGIETNDVHLDKNEDALYQGIKIELNDEPNIQHPLDVDCVEDKNIKCPLEIEVKSDQIEFVGGAEMDQEESDSEIPLSKLTVQLQHKEESSESNSSTKWDDKDKNTKEGKVHIHEGKWLATCFGEETVTKPISHHELDKFLKLNTVLTCEICRIPMEDFLTLQTHFKDSHTVKPFVTCCDKKFELRCRLVDHIILHQLPNYFTCVVCSKVLSCRLNLRKHMVVHDKKEAFQCDQCEKTFYRKEVFNRHVLDIHTLDRKFKCEECDKLFASKCSLNTHIYGVHKGRYKKICEQCGKVSCDQETFLRHQMKHSNKPQTYFECPKCSVKLSTKHGLRHHIRYQHSEDTREHVCNVCGNKSTSEAALKRHVTFMHKYKRDFKCSLCEKAFKRALTLKPNAEVDHAKAICYSCWNTVQSFHKFYKTIEEAHTKFTAYLKLPDKESDHESSHFESFSDLFTTVVKQENSEETTKVELSGSPENASQNHEENEFLNYNSNNESEVPHIKLDSNKSSLKNNKYEESQGNETDSKDASSAEDNDSEQQDYDSDSDSEYNTPKKKPKVKGSSSIKNEFGKNRIPCKEFDSFIKKNIELSCSLCNESIENFACLKEHFKKVHKIDAFVTCCKKQWTSRFSLVHHLLLHQDPDLYKCKKCGRVLANNRSFKNHMQSHVTQERIHECTKCRKKFASIPKLEKHLKSHIRTHIDQICEQCGKVCHSKQSLSAHQKREHMGFVKQRVQCTKCGAYLSDSSTLHFHMKYQHPKTKVVNACHLCGKISATAYGLKRHIQYMHTMERVHKCTICEDKAFKTAQMLRGTIFVAVTLSVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -