Svit022252.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrphus vitripennis
Gene Symbol
grau
Assembly
GCA_958431115.1
Location
OY288109.1:91128751-91142678[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.92 1.4e+02 4.3 2.6 2 23 220 242 219 242 0.90
2 31 8.2e-06 0.0012 20.2 1.4 1 23 274 296 274 296 0.99
3 31 0.00067 0.1 14.2 1.8 1 23 305 327 305 327 0.98
4 31 0.0044 0.66 11.6 0.7 3 23 337 358 335 358 0.96
5 31 3.6 5.5e+02 2.4 0.8 2 23 369 391 368 391 0.88
6 31 0.00013 0.019 16.4 0.3 1 23 398 421 398 421 0.94
7 31 0.12 18 7.1 0.5 2 23 638 660 637 660 0.93
8 31 0.00016 0.024 16.1 2.5 1 23 692 714 692 714 0.99
9 31 0.00034 0.051 15.1 2.6 1 23 721 743 721 743 0.98
10 31 0.0012 0.18 13.3 2.9 3 23 752 773 750 773 0.96
11 31 0.00061 0.092 14.3 1.3 2 23 782 804 781 804 0.96
12 31 0.00082 0.12 13.9 0.4 2 23 812 834 812 834 0.95
13 31 6.2 9.3e+02 1.7 0.2 1 14 840 854 840 857 0.82
14 31 0.024 3.5 9.3 0.3 2 23 1091 1113 1090 1113 0.95
15 31 0.38 57 5.5 1.0 6 23 1122 1139 1122 1139 0.99
16 31 0.00012 0.018 16.5 0.2 1 23 1145 1167 1145 1167 0.99
17 31 2.6e-05 0.004 18.6 1.4 1 23 1175 1197 1175 1197 0.99
18 31 0.00012 0.018 16.5 0.3 2 23 1204 1226 1203 1226 0.95
19 31 2.5e-06 0.00037 21.8 0.5 3 23 1234 1254 1233 1254 0.96
20 31 0.00089 0.13 13.8 0.4 2 23 1263 1285 1262 1285 0.95
21 31 0.00055 0.082 14.4 0.1 1 23 1292 1315 1292 1315 0.94
22 31 0.006 0.91 11.2 0.3 1 17 1321 1337 1321 1338 0.89
23 31 0.39 59 5.4 3.7 2 21 1548 1567 1547 1570 0.94
24 31 5.3e-05 0.0079 17.6 1.0 1 23 1602 1624 1602 1624 0.98
25 31 2.8e-05 0.0042 18.5 3.8 1 23 1632 1654 1632 1654 0.98
26 31 2.3e-05 0.0035 18.7 1.7 1 23 1662 1685 1662 1685 0.96
27 31 0.0082 1.2 10.7 0.3 3 23 1693 1713 1692 1713 0.96
28 31 0.00016 0.023 16.1 0.4 2 23 1722 1744 1721 1744 0.95
29 31 0.0039 0.58 11.8 0.1 1 23 1751 1774 1751 1774 0.92
30 31 1.9e-06 0.00029 22.2 0.9 1 23 1780 1802 1780 1802 0.98
31 31 4.7e-05 0.0071 17.8 5.0 1 23 1808 1831 1808 1831 0.98

Sequence Information

Coding Sequence
ATGATTTGCTTATTGTGTATATCGGAATCAGACCAAATGCTGAACATATTTGACCAAAACGGCATCAATTTAAATATCAGGGACATCATAACAAAGTACTTTTGGTTACAGCCAAATGCAGAAAATATCAATGCCAGGTCAATTTGTTGTTCATGTTGGATAACTGTTGAAACATttcatacatattatacatCAATTGAAAAAGCCCACAATAGACTTATATGCCTTAAACAAGATAAAGACGAATCGACTCATTTCCATAATTCTTCAGACTTGTCTACAACAGTTGTAAAACAAGAAGATTCTGATGAGAAAGAAAGTAACTTGCCAGAAATACTGGAAATTAATCCATTAATCCAGCCAAAAAATGACGAAGAGAACGATTCCGAATCTGAGTCAGAAGTTCCCCTAGCAATGCTTAGTGATTGccaaaaagttacaaaaaatgataaatatgaAGAAACTAGTGGTAATGAATCAAACTCGGATATTACTTCCATTGGGCAACACAACGCCACTTGCAGCGAAAGTGAAAGCGAATACACAGCACCCAAGAAAAAAGCTAAAGTAAAAGCTACGCCCACGGTAAAAGACCATAGTAAAAATTCAGTGCATCGTAAGGAATTCGATAGCTTTATTAAGacaaaaatagatatttctTGCAATGTTTGTACCAAACCCCTATCGAACTTCTTCAGCCTTAAAGAGCACTGCAAAAAAGTCCACAAAACAGATGGGTTTGTAATCTGCTGTGATAGACAATGGACAAGTCGCTTTTCCCTAGTACATCATTTGCTACTGCATCAGAATCCAGATCGATTCAAATGTGAAGAGTGTGATCGAGTATTGGCCAACAAGAAATCTTTTAACAATCACATGAAAACGCATCTGACGCAAAAACAAGAACCAATTCACAAGTGCGTAAAAtgtaacaaattattttcatccaTTGCGAAATTGGAAAGACATTTAAATATACACGTTCAAGCAATTGACACTGATCAAATATGTGAACAATGTGGAAAAGTCTATCACAGCAGGCAGGTTCTTGTAGCCCACCAAAAGCGAGAACATATGGGTATTGTAAAGAAATCTGAACGTGTGCAATGTCCAAAATGCGGAGTTTATTTGGGAGATTTATCAACCTTAAAGTTCCATACAAAACACCTACATCCTAAAATTAAAGTTGTCCATGCTTGTACGATTTGTGGGAGAGTTTCAGCGACTGCATATGGACTGAAGCGGCACATACAATATATGCACACAATGAAACGGATTCATAAGTGTACTATATGTAAGGACAAGGCATTTAAGACAGCACAGATACTCAggCCAAGTGCAGAAGATAACAATACAAAAGCTATTTGTTCTTCTTGTTGGAAAACACTAGAATCATTTCATAGATTCTATGAAACTATTGAAGAAGCACACACCAAGCTTACAACATGTCTTAAACTTCCCATTGAAGAAAATGATCCGGAATTGAATCATCATTTCGAGGTACTTTCAGACTTCTTTACACCAGTTGTAAAACAAGAAACTAATGTTGAGTTACCAGACACAATAGAAACTCCATCAATCCAACCAATTGATACTTTGGCAAAGAATGATGAAACTCTTAAAGCACTTAATTCCGATTCAGAGTCTGAAGTTCCTCTCGTTGAACTAAGTAATCAGGCAAAGTCTATAAAGGACGATAACGATGAAGAGGAAAACAGTGGTAATGAATCGGACTCAGCCCAAGACAACGGATATTATCAACAAGACGATGACTCTGGTAGTAGCTCAGATTCGGACAGTGAATAcaagaaaaaaggaaattggaaagttttggaaaaaactgatcggtcaaaaaaaaaacaaatgccgTGTAAGGAGTTTGACAGTTTTATCAAACAGAATATGGAACTCGTGTGTAATATCTGTAACGAGCCTGTTGATAATTTCTCTTGCTTAAAAGAACACTTTAAGGAAGCCCACAAGCTAAATGCGTTTGTTATATGCTGTGAAAAACAATGGACTAGTCGCTTTTCCTTAGTCCATCATTTGCTGTTGCATAAAAATCCAGATTTGTACAAGTGTCAAAAATGCGGTCGAGTTTTggccaacaaaaaaagtttcaagAATCACACGCAGTCGCATATTACCCAAGAACGTATTCACAAGTGCCCTAAATGCGTAAAGATGTTTTCGTCAATTGCCAAATTGGAAAAACACTCCAAAACGCACATCAAACCGCGCATTGATCAAATATGTGAACAATGTGGCAAAGTTTGCCATAGCAAGCAAAGTCTGATTGCACATCAAAAGCGAGAGCATTTGGGTTTTGTAAAGCAACGAGTTCAATGTCCGACGTGCGGCACATATTTGTCAGATTCATCAACCTTACACACTCATATGAAGTATCAACATCCAAAAGTCGAAGTTTTGAATGTTTGTAAGCTCTGTGGAAAGATTTCGTCCACTGGTTATGGACTGAAGCGTCACATGCAGTACATGCATTTAATGGAACGTGTTCATAAGTGTAATATTTGTGAAGATAAGGCATTCAAAACGGCTCAGAGACTCCGGCCTGATGCAAAGGACCCAAGTGCGAAATTTATATGCACAACTTGCTGGGCGGAATTGAGTACCTTCCATGAATTTTATGTGCAAGTTGAAGAAGCCCATGTCAGTCAGCGTAGAGTCATCGAAAATGATGAGGAGTTAAAATTGGAGAATGTTTTCACTCAATCGACGCAAGAAAATCCTCTTCCTGGCGAACAATTTGCATCGGAATTTTTGGATTCAGATATCAAACTAGAAGTCAAAGAAGATGCCGATGTTCGTCTGAATGCAGGTGATGATCATACTGCAGAATATAGCAAGAGTCAAACTCCTTCCCAAGAATCGCAGTCGGTTAATTTAGAAGCTCCACCTGCTAGCTCTACAAGAAGTCGTAGATCTGTAGACAAACCCTACGTTAAGAATGATTCTTCGACTAGTGAAGATGagaaaaactttgaaaacaaCTATGTTGACCGATGCAATTCAACAGACTGGCAAAACGAAGAAGATAACTCGGACAACACCGAAGAAGACAGTGATTATGAGGACAGAACATCCAAGTCAAAAAAGTCCAATGAACCTACCGCCAAAAAGCGTGGTCGACCGAGAAAAGGTGAGGCCAGAGCACCTCCTTGTAAGAAACGTCGAAATTCGGGAgaacagaatttaaaaagaaaacgcaTGCAAGAATTTGATGAAATAATTGCTCAAAATATGAAGCTTTCGTGTGCCATGTGTCAAAATATATTTGCTAATTTTGCTGCTCTCAAAAGACACTTTCGTTCGGAACACAACGAATGTGGATATGTGGTTTGTTGTACTAAAAAGTTTCGTAAACGCGGTGTTCTCGTGGATCACATATGCACTCATCAAAATCCAGAGTACTTCAAGTGTGAACAATGCGGAAGAGTATTGGCGAACAGAAAAGGTCTGGACAGTCACATGCTAACTCACGATACAGAAAAACAACGAATATATCAATGCGATCAATGTACGCTGAGTTTTTATACCAGGCCACTTTTGACTCGTCACTTGCAAACGCACATTTCCGAACGCAACATCAAGTGTCCTGATTGTGACAAGTTTTTCTCAACACAGGATATCTTACGAACTCATGTAAATAATGTGCACAATGCCGCATACACGAGGATCTGTGATCAATGTGGAAAATCATTCCGCCGGCCGGATGCTTTTCGACGCCATCAATTGGAACATGATGGCATAACGCAGCCAATGGTTCCTTGTGAAAAATGCAATGTGAAATTAACAAGCAAATATGGATTGAAGAGGCACATGGAATCAATGCATCCTGAACAAGATGTTAAACATATTTGTACTGAATGTGGAAAAGTCGCCCCAAGCGCTGCTGCATTGCAAAGACATATTTCCTATATGCACAAAATGGAACGAAAATACAAGTGTCCCATGTGTGATAAAGCATTTAAAAAGACTGGTGGACTAAAGCAAGTTGAAGAGGCGCACTTGTCTTTGCTAACAGCAACTGCTATCCCTGAAGAGGATTTAAAGCCCGAAGATGATGAGATTGCTGTTGAAGTTGAAGTTCGATTAATAGATAAATTTGATTCCAACGGAGATTATTCTAATACAGACGTTAAGCTGGAGGTAAAAGAAGATGGAGAGATTTGCTTGCCTCAAATCGAACACTCTTCCGAGATTGACCTCAAACTTGATGATCACGAAATCGAACAAAAACAGCAACATTCACTTATTGATTCAAGTGACAGTGATGATTCAGAAGTTCCACtagcaaatttttcaaaaactcactCGAAGATAAAACGTAGAACAAAAGTGAAGACAACAACGTCCAGTAATGATGATCAGGAATCATCGGCAGAGTGGCAAGACCCTAATATTTCacatgacgatgatgacgacgatgaagaAGACAgcgattttgaagaaaaacataaaCCCACACCCATACACAAAGTCCAAAGCGGTAAAAAACGTGGTCGCCCACTAAAAGGAACATCTAGAAATGCAACTCGCAAGGAAATCACTGAAGAACAAGTCAAAAAGCAACAACTCTCTCATGAGTACGATGATATCATACAAAAACACATGAAATTGACATGTAATATTTGTCAGTTAGCTTTGacaaatttcttttcattaaagAAACACTACCGCTGCAAGCACAATGAGCGAGGATATGCATTTTGTTGTAGCAAGAAATTCCTTAAACGTGGTGTACTCGTTGATCACATTTACACTCACTTAAATCCAGAACATTTTAAGTGTGATAAATGTGACAAGGTTCTTGCTGATCGGCGATGTTTGGAAGTTCATATGAATATACACAGTGAGGAGAAGCAACGCATCTATCAGTGTGATCAGTGCAATAAGAGTTTCTTTAAGAAGCCCCTACTGACGCGTCACATGCATATTCATATACCTCAGGAGGAGCGAAAGTTCCACTGTGAAGAATGCAATAAGTTCTTTCCATCGAATTACACTCTCCGTGCTCATATCAACAATGTGCACCAGAATGCATATGCTAAATTCTGCGATCAGTGTGGCAAGTCGATACGTGGACGGGAAGCATTCCAAAGGCATTTGCTGGAGCATGCTGGTGTTCCTATACCAAGTGTACAATGTGAAAAGTGTGGAGCTAAACTCAAGAACAAATATGGCCTCAAGAGACACATGAATGCAATGCATGCCGATTCGGCTGTGCCGCATGTGTGTAATTTGTGTGGCAAAGTAGCTCCAAATGCCCCTGCGCTACAAAGGCATTACTATTATGTGCACAAGTGTGAGCGCAGTCACAAATGTCCCATGTGTGATAAGGCTTTTAAAAAGGCTGCAGGATTGAAGgAACACATGACAACTCATACTGGAGAAGTTCTTTACACATGCCCACATTGTCCGAAAACATTTAACTCAAATGCTAACATGCATTCTCATCGTAAAAAAATGCATCGCAAAGAATGGGAAGAAAATAGAAGACATCCTCACATGGGAGCCAGTGCAATTTCAAATAATGTTACCGAGGAGAACacccagcagcagcagcagcagtag
Protein Sequence
MICLLCISESDQMLNIFDQNGINLNIRDIITKYFWLQPNAENINARSICCSCWITVETFHTYYTSIEKAHNRLICLKQDKDESTHFHNSSDLSTTVVKQEDSDEKESNLPEILEINPLIQPKNDEENDSESESEVPLAMLSDCQKVTKNDKYEETSGNESNSDITSIGQHNATCSESESEYTAPKKKAKVKATPTVKDHSKNSVHRKEFDSFIKTKIDISCNVCTKPLSNFFSLKEHCKKVHKTDGFVICCDRQWTSRFSLVHHLLLHQNPDRFKCEECDRVLANKKSFNNHMKTHLTQKQEPIHKCVKCNKLFSSIAKLERHLNIHVQAIDTDQICEQCGKVYHSRQVLVAHQKREHMGIVKKSERVQCPKCGVYLGDLSTLKFHTKHLHPKIKVVHACTICGRVSATAYGLKRHIQYMHTMKRIHKCTICKDKAFKTAQILRPSAEDNNTKAICSSCWKTLESFHRFYETIEEAHTKLTTCLKLPIEENDPELNHHFEVLSDFFTPVVKQETNVELPDTIETPSIQPIDTLAKNDETLKALNSDSESEVPLVELSNQAKSIKDDNDEEENSGNESDSAQDNGYYQQDDDSGSSSDSDSEYKKKGNWKVLEKTDRSKKKQMPCKEFDSFIKQNMELVCNICNEPVDNFSCLKEHFKEAHKLNAFVICCEKQWTSRFSLVHHLLLHKNPDLYKCQKCGRVLANKKSFKNHTQSHITQERIHKCPKCVKMFSSIAKLEKHSKTHIKPRIDQICEQCGKVCHSKQSLIAHQKREHLGFVKQRVQCPTCGTYLSDSSTLHTHMKYQHPKVEVLNVCKLCGKISSTGYGLKRHMQYMHLMERVHKCNICEDKAFKTAQRLRPDAKDPSAKFICTTCWAELSTFHEFYVQVEEAHVSQRRVIENDEELKLENVFTQSTQENPLPGEQFASEFLDSDIKLEVKEDADVRLNAGDDHTAEYSKSQTPSQESQSVNLEAPPASSTRSRRSVDKPYVKNDSSTSEDEKNFENNYVDRCNSTDWQNEEDNSDNTEEDSDYEDRTSKSKKSNEPTAKKRGRPRKGEARAPPCKKRRNSGEQNLKRKRMQEFDEIIAQNMKLSCAMCQNIFANFAALKRHFRSEHNECGYVVCCTKKFRKRGVLVDHICTHQNPEYFKCEQCGRVLANRKGLDSHMLTHDTEKQRIYQCDQCTLSFYTRPLLTRHLQTHISERNIKCPDCDKFFSTQDILRTHVNNVHNAAYTRICDQCGKSFRRPDAFRRHQLEHDGITQPMVPCEKCNVKLTSKYGLKRHMESMHPEQDVKHICTECGKVAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKQVEEAHLSLLTATAIPEEDLKPEDDEIAVEVEVRLIDKFDSNGDYSNTDVKLEVKEDGEICLPQIEHSSEIDLKLDDHEIEQKQQHSLIDSSDSDDSEVPLANFSKTHSKIKRRTKVKTTTSSNDDQESSAEWQDPNISHDDDDDDEEDSDFEEKHKPTPIHKVQSGKKRGRPLKGTSRNATRKEITEEQVKKQQLSHEYDDIIQKHMKLTCNICQLALTNFFSLKKHYRCKHNERGYAFCCSKKFLKRGVLVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNIHSEEKQRIYQCDQCNKSFFKKPLLTRHMHIHIPQEERKFHCEECNKFFPSNYTLRAHINNVHQNAYAKFCDQCGKSIRGREAFQRHLLEHAGVPIPSVQCEKCGAKLKNKYGLKRHMNAMHADSAVPHVCNLCGKVAPNAPALQRHYYYVHKCERSHKCPMCDKAFKKAAGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGASAISNNVTEENTQQQQQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-