Svit022090.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Syrphus vitripennis
Gene Symbol
grau
Assembly
GCA_958431115.1
Location
OY288109.1:88990853-89003494[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.11 16 7.2 0.1 2 23 254 276 253 276 0.94
2 37 0.015 2.2 9.9 1.8 1 19 308 326 308 331 0.96
3 37 0.013 1.9 10.2 2.4 1 23 339 361 339 361 0.94
4 37 1.4e-05 0.0021 19.5 0.3 1 23 369 392 369 392 0.94
5 37 0.18 27 6.5 0.2 3 23 400 420 398 420 0.95
6 37 0.087 13 7.5 1.1 2 23 429 450 428 450 0.96
7 37 1.7e-05 0.0025 19.2 0.2 1 23 455 478 455 478 0.97
8 37 3.4e-06 0.00052 21.4 4.9 1 23 484 506 484 506 0.98
9 37 7.9e-05 0.012 17.1 6.2 1 23 512 535 512 535 0.98
10 37 0.23 34 6.2 0.1 2 23 769 791 768 791 0.94
11 37 4.1 6.2e+02 2.2 0.2 6 23 800 817 800 817 0.98
12 37 0.0023 0.34 12.5 4.2 1 23 823 846 823 846 0.97
13 37 0.0006 0.09 14.3 1.3 1 23 854 876 854 876 0.94
14 37 9.7e-06 0.0015 19.9 0.5 1 23 884 907 884 907 0.96
15 37 4 5.9e+02 2.3 0.1 3 23 915 935 914 935 0.93
16 37 0.011 1.6 10.3 0.2 2 23 944 966 943 966 0.96
17 37 2.6e-05 0.004 18.6 0.1 1 23 973 996 973 996 0.97
18 37 2.9e-06 0.00043 21.6 4.1 1 23 1002 1024 1002 1024 0.99
19 37 0.00066 0.1 14.2 4.7 1 23 1030 1053 1030 1053 0.98
20 37 0.27 40 6.0 0.3 2 23 1271 1293 1270 1293 0.93
21 37 0.022 3.4 9.4 3.3 1 23 1325 1348 1325 1348 0.97
22 37 0.9 1.3e+02 4.3 0.2 1 23 1356 1378 1356 1378 0.97
23 37 3.6e-06 0.00054 21.3 2.1 1 23 1386 1409 1386 1409 0.97
24 37 0.0007 0.11 14.1 1.2 3 23 1417 1437 1416 1437 0.96
25 37 0.47 71 5.2 0.4 2 23 1446 1468 1445 1468 0.94
26 37 6.7e-06 0.001 20.4 1.4 1 23 1473 1496 1473 1496 0.96
27 37 0.00017 0.026 16.0 1.6 1 23 1502 1524 1502 1524 0.98
28 37 0.00036 0.054 15.0 1.1 1 20 1530 1549 1530 1551 0.96
29 37 0.85 1.3e+02 4.4 0.2 2 23 1697 1719 1696 1719 0.94
30 37 0.00011 0.017 16.6 2.3 1 23 1751 1774 1751 1774 0.90
31 37 0.00049 0.073 14.6 3.2 1 23 1782 1804 1782 1804 0.95
32 37 4.8e-05 0.0072 17.8 0.5 1 23 1809 1832 1809 1832 0.96
33 37 0.94 1.4e+02 4.3 0.1 3 23 1840 1860 1839 1860 0.95
34 37 0.072 11 7.8 1.0 2 23 1869 1891 1868 1891 0.95
35 37 0.00061 0.091 14.3 1.4 1 23 1896 1919 1896 1919 0.95
36 37 0.0005 0.076 14.5 2.9 1 23 1925 1947 1925 1947 0.97
37 37 0.0036 0.55 11.8 5.3 1 23 1953 1976 1953 1976 0.98

Sequence Information

Coding Sequence
ATGGTGTGTCGTTTGTGTTTAAATGTAGCCGATGAAAATATTGCTATATTTAGTGAGGAAAAAATCCAAAAGTATATAGCAAAGTTTCTTCAATTAGAGCTATCACCAGAAGATCCGGTTTCCAAAGTAATATGCGCTCGTTGCTGGCAACAACTagatagttttcaaaatttttgctTGGAAGTAGAGCAGGCTCAAAAAACTCTTAACGCTTCGATCGAAGAATCAAAACAGAACTTAGTTGTTGTGAGTCCTGAAGTAAATAATTTGAATGTCATTAAAAAAGATGTAGAAGAGTCTGATGATGATACTCGTGATTATAATGAAACACTATTCTGCCTGGATGAAGCAATAGCTAAGACTGATGAAGTGTGCAACGAACAATTATCCAAACCAACAACTACAATTTGTTCCCCTGAATCAACAGAAAACGATTCAAATCGAAGAGTTAGTCTTCGACAGTCAAATGCTCGAAAATTCGAGTGCGATGATGTTTCTGATATTGAACCGGTAAGAAAAAAACGTGGTCGACCTAAAAAGAAAGAAGTGAAAATCCCAAAGGAAGAACTAACTGAAGAAGATAGTAAAACTGAATTGTTTAACGTTAGCCTTGACCCGAATGCAAAGAGAAAACGAGGCCGACCCAAAAAAGGCGAACAAGTTTCACCAAAAGTTAAACGACCCAGATCAGAACAATGTTCGAAAATGATGCAAACTGCGAAAGAATTCGatgaaatcattcaaaaaaatatgaatctttCGTGTAATATTTGTTCAGTTAGGCTTATTGACTTTGCTGAATTGAAACGACATTTTCGAGCTGTTCATCAACGCAGAGGCTATGCTGTTTGCTGCGATAAGCGACTTTTTAAACGTGGTCTAGTTGTGGACCATATTAATGTTCATAACGATCCTGAGCATTTTAAatgtACAAAATGTGGTAAAGTTTTGGCTGATAGGATGTGCTTACGCAATCATGATCTGTTGTTCCATCAGACGGAGGAATTAAAAACCTTTCAATGTGCTTATTGTCCCAAAAAATATGCCAAACAATATCTATTGGACCATCATAGTGTTAAACATGTCCCGCAAGATGAATGCACATTCTTTTGTGCCGAATGTGGAAAAGGattcCCGACAAATTCAACCCTGACAAAACATGTAAATCAAATCCATTCCAATATTTATGATAAAATGTGTGAAATCTGTGCTAAACTTATTCGAGGAAAAGCCAATTTTGAGCGACACATGGAAGAGCATGAAGGTATTGTACAGCCTCAAGTGCAATGTACGCAATGTGGTTCATGGttgaaagataaaaatagtCTTCGAAAGCATATGTACAAACATGATGGTAAAACTTACAACTGTAACGTTTGTGGTAAAAATGCACCAACAAAAAGTGCCCTTCAAAGTCACATGAGATACGTTCATCAGTTATCGCGAATGTTTCATTGTACATATTGtgataaatcatttaaaaagagCGTTAATTTAAAAgAACATATGACAACTCACACCGGAGAAGTTCTTTACACATGTCCACATTGTCCAAAGACATTTAACTCAAAAGCTAATATGCACTCTCATCGAAAGAAAAAGCATCGAGAAGAATGGGAAGCAAATAGGCGTTATcctaaaaaagaaatgaaaagcgAACTTTCACCAGAAGATCCTATATCTAAAATTATATGCAACCCTTGTTGGCTGCAATtggataattttcaaaagttcagTTTACAAATAGAAGAAGCTCAAAAAACTCTAAAGAAAACGAATGAGGTAGTTCAAAACTTGGggataaataataatgaaaGCTTAGATGAAGTTAAAGAAGAAGATCATTCAGAAGAATCAATTGGACATTCTAGCGATAACGAAGATTTACTTTGTATAGATGAAGATACTTTCAAATTTGAGTCACACAATGAACAAGACGATAAATCAAAACCTACAACCTCTGAATCATATGAATCTATCACAACGCCAAGGGCTACACGGCGGTCAGCTTTAAATAAAtctgaattcaaaattttttcaaacttaaatggaaaacgaaaaagaagtcAAGAAATTGAAGTCGAACAACCTGCATCAGAAAGAAAAACAGAAAGTGAAGACAGAGAAGAGAAAGAAAAGGATGATGATATTAGCACCAAAataaatgtaaagaaaaaaccCACCCGTCCCAAAAAAAGTGAGCAGATTAAGTCCAAGGAAAAAGCACAAAAGtctgaaaaatttataaaagccATGCAGACTTCTAAGGAATTCGATGAAATCATTCGAAAACATATGAACTTAACTTGTGATATTTGTTCAATTCAACTTTCTGATTTTGCCGAATTAAAACTTCACTTCCGACTTGTCCACAAAAGAAGAGGATATGCAGTTTGTTGCAATAAGCGGCTCAATAAACGTGGTCTATTTGTAGACCATATTAATGTACACAACAATCCTgagtattttaaGTGCACAGAATGTGATAAGATCTTATCAGATAGAATTTGTCTGCACAAACACATGATATCGTTCCATCAAACTGAGGAACTTAAAACATTTCAATGTGATTATTGTCCAAAGAAATTTGCTAAACAATATCTGCTGGATCAGCATAGTGTTAAACATGTTCCACAAAATGAATTCACATTCATTTGCAGTGAATGTAAAAAGGGTTTCCCAACAAATTCAACTCTAAAAGCACATTTGAAACAAGTTCACTCAACATTGTACGACAGAATGTGTGAAATCTGCGCCAAATTGATTCGAGGTAAAGCAGCTTTTAAGCGACATGTAGAAGAGCATGAAGGAATTGTTCATCCACAAGTTCAATGTACAGAATGTGGTGCCTGGTTGAAggataaaagaaatttaagaaagcACATCGTGACACAACATGCAAATGATGATAAAAATTATTCCTGTGATATTTGCGGCAAAAAAGCACCATCGAAAGGTGCTCTTCAAAGTCACATGCGATATGTTCATGAATTATCGCGTATATTTAAATGCACATTTTGTGATAAGTCGTTTAAAATGAACGATCACCTGAAggaacacATGGCAACTCACACTGGAGAAATACTTTACACATGTCCATATTGCCCAACAACATTTAATTCAAGGTGTAATATGTATGCTCATCGAAAGAAGAAGCATCGTCTATCACCGGATGATCCAGTTTCCAAAGTAATATGTGCTAATTGTTGGCAGCAATtggataattttcaaaagttctgcCTTCAAATTGAAGAAGCACAAAAATCACTCAAAGTATGTTCAGATAATTTGGTTCAAGAAgctaaaaaagattttattaaagATTTAAGTCCTGTTAAGGAAGAGGATCCCGCAGACGAATCAAATGagGATCCCTGTGTTTTTGAGGATTTATTGCCTTGTCTTGATGAAGACACTTTAAAATTGGAATATAAATCtgatgaagaaaataataaacaaaagccTGCATCTTCTGATTCTTCTGAATTAAAAGAGCCTCTTCCAAAACGAAgtttaagagaaaaaagaaagacaatagtaaaagaaaaaagtgaatCAGAGTATTCAAGtccagaagaagaagatgatgatgatgatgaagacgatgacgatgatgaggaagaacaagaaaaaagagaacagcaaaaaagaaaaagagctGTCTCAAATACAAAAAGGAAATATAGTCGAGCGAGAAAGGATGATCAAAATATCTCGGGAGAGAAGAAATCAGGAAGGTCGAGAAAGCCTTCACGAGCTATGCTGCTCGCTAAGGAACAGGAcgaactaataaaaaaatatatgaaactaACATGTGATATTTGCTCGATTGACCTCACTGATTTTAATGACTTGCAAAATCATTTTCGATTCATTCACAACCGCACTGGTTATGCtgtttgttgcaaaaaaaaacttaaaaatcgtGGTCTAACTGTTGATCATATCAACGCGCATAACGATCCTAATTATTTCAAatGCGCAGAATGTGGTAAAGTTATGTCTGATAGATTTTGCATGCAAAGACACAAGCTAACTTTTCATCCAACCGAAGAACTGAAAACATTTCAATGTGCTTATTGTCCTGACAAACTGGCCTCTCAATATCTTTTAGATTTGCATACTATAAAACATGTACCAGAGGATAAATGCACCTTCATTTGCAAAGATTGTGGAAAGGGATTCCCAACAAACTCAACTCTGCATAGTCATATAAAACGCAAACATTCGACAGCATACGATAGGATGTGCGAAATCTGCGCTAAACTATTTCGGCATAAATCAGCTTTTGAACGCCATATGGAAGAGCATATGGGTATTGTTCATCCTCAAGTACAATGTACGGAATGTGGTTCATGGTTGAAAGACATGTCGAGTCTTAAAAAGCATGTTAATAATAAACATGATGGAAAACAACATACCTGTAATATATGTGGCAAAAGTTCAACCTCGAAGAGTGCTCTTGAAAGTCACATTAAATATATGCATGAAACAATGCCTGAATTTAAATGCACATTTTGTGAAAAATCCTTCAAAAAGGCTATTAAACTGAAGgaaCACGTGGCTACTCATACTGGAGAAGTTCTCTACACATGCCCGCATTGTCCAACAAAGTTTAATGCTAGATCCAATCTGCATTCGCATCAAGATGCTTACGATAACGTTCAAACAAAACACTCTCTGGATAAAGAAATATTACAAGTTGCTTTGgtaattgaaaaagaagaagatgtgTTAATACCGGAAATGAATGACTCATCTGAAACAGAAAAATCTATTCCAAAACGAAGAGCTACGAGAAagtcaactttaaaaaaattagactgCAGTAGCCCTCCAGGCGTcataaaagaaaagagaaaacgATCCATTAAGAAAGAAATCATAAAACATGAGTCCTCCTCTGAAGATGAAGTAGAAAGCACCAATGATGCCGAATTTGGCCAAAATGTTAAGGCACAAGTTAATAGATcgagaaaaattgaacaaaatcatAAAGAGGATACAGAAAGCAGATcggaaaagtttttgaaaaatatgaaaactacAAAAGAAAACGAtgcatttattcaaaaacatatgAAACTGTCGTGTGATATTTGTATCATAGATTTTCCTGACTTTACAAAGCTGAAAAATCATTTTCGTGTAGTTCATCAACGCAGAGGATATGTTGTGTGTTGCAATAGACAGTTGAAAAAGCGTGGCCTAATTGTAGATCATATTTACACACACAACGATCCTGAGTATTTTAAATGCACGGAGTGTGGTAAGGTTCTTTCTGATAGATCTTGTTTGCAAAGACACAATATTCTATTCCACCAAGCCGAAGAATTAAAAACGTTTCAATGCAATCATTGTCCTAAGAAATTTCCCACACAAAAATTACTAGATTTGCATATTGTCCATCACAACGAATGCACTTTCATCTGCAGCGAATGTGGAAAAGGattCCCAACAAAATCAACTATGAATATTCATTTTAAACGAATTCACTCGACATTGTGCGACAGGATGTGCGAAATCTGTGCTAAGCTTATTAAAGGCAAAACAGCTTTTGAGCGTCACATGGAAGAACATGAAGGTATTGTTCAGCCCAGAGTGCAATGTAAAGAATGTGGTTCATGGTTGAAGGATAAGAATAGTCTTCGAAAACATATGTATAGCAAACATGATGGAAAAACACACGATTGcaaaatttgtggaaaaaatacACCATCGTATAGTGCATTGTATAGTCACATGAAGTATATGCATGAATTATCGGCAATGTTTCATTGCACTTTTTGTGATAAGTCATTTAAAAAAGCTATTAAACTTAGGGAACATGTGGCAACACATACTGGAGGATTCCTCTACACATGTCCACATTGTCCAACAACGTTCAATGCAAAAACTAACATGCATTCTCACCGAAAGAAAATGCACCGAGAAGAATGGGAAGCAAATAGACGTTATGCCAAAAGAACTCCAACTGGTGAAgcagtttcaaacacaaaagtCTCGGATGTTGATATTCCGAAGTGA
Protein Sequence
MVCRLCLNVADENIAIFSEEKIQKYIAKFLQLELSPEDPVSKVICARCWQQLDSFQNFCLEVEQAQKTLNASIEESKQNLVVVSPEVNNLNVIKKDVEESDDDTRDYNETLFCLDEAIAKTDEVCNEQLSKPTTTICSPESTENDSNRRVSLRQSNARKFECDDVSDIEPVRKKRGRPKKKEVKIPKEELTEEDSKTELFNVSLDPNAKRKRGRPKKGEQVSPKVKRPRSEQCSKMMQTAKEFDEIIQKNMNLSCNICSVRLIDFAELKRHFRAVHQRRGYAVCCDKRLFKRGLVVDHINVHNDPEHFKCTKCGKVLADRMCLRNHDLLFHQTEELKTFQCAYCPKKYAKQYLLDHHSVKHVPQDECTFFCAECGKGFPTNSTLTKHVNQIHSNIYDKMCEICAKLIRGKANFERHMEEHEGIVQPQVQCTQCGSWLKDKNSLRKHMYKHDGKTYNCNVCGKNAPTKSALQSHMRYVHQLSRMFHCTYCDKSFKKSVNLKEHMTTHTGEVLYTCPHCPKTFNSKANMHSHRKKKHREEWEANRRYPKKEMKSELSPEDPISKIICNPCWLQLDNFQKFSLQIEEAQKTLKKTNEVVQNLGINNNESLDEVKEEDHSEESIGHSSDNEDLLCIDEDTFKFESHNEQDDKSKPTTSESYESITTPRATRRSALNKSEFKIFSNLNGKRKRSQEIEVEQPASERKTESEDREEKEKDDDISTKINVKKKPTRPKKSEQIKSKEKAQKSEKFIKAMQTSKEFDEIIRKHMNLTCDICSIQLSDFAELKLHFRLVHKRRGYAVCCNKRLNKRGLFVDHINVHNNPEYFKCTECDKILSDRICLHKHMISFHQTEELKTFQCDYCPKKFAKQYLLDQHSVKHVPQNEFTFICSECKKGFPTNSTLKAHLKQVHSTLYDRMCEICAKLIRGKAAFKRHVEEHEGIVHPQVQCTECGAWLKDKRNLRKHIVTQHANDDKNYSCDICGKKAPSKGALQSHMRYVHELSRIFKCTFCDKSFKMNDHLKEHMATHTGEILYTCPYCPTTFNSRCNMYAHRKKKHRLSPDDPVSKVICANCWQQLDNFQKFCLQIEEAQKSLKVCSDNLVQEAKKDFIKDLSPVKEEDPADESNEDPCVFEDLLPCLDEDTLKLEYKSDEENNKQKPASSDSSELKEPLPKRSLREKRKTIVKEKSESEYSSPEEEDDDDDEDDDDDEEEQEKREQQKRKRAVSNTKRKYSRARKDDQNISGEKKSGRSRKPSRAMLLAKEQDELIKKYMKLTCDICSIDLTDFNDLQNHFRFIHNRTGYAVCCKKKLKNRGLTVDHINAHNDPNYFKCAECGKVMSDRFCMQRHKLTFHPTEELKTFQCAYCPDKLASQYLLDLHTIKHVPEDKCTFICKDCGKGFPTNSTLHSHIKRKHSTAYDRMCEICAKLFRHKSAFERHMEEHMGIVHPQVQCTECGSWLKDMSSLKKHVNNKHDGKQHTCNICGKSSTSKSALESHIKYMHETMPEFKCTFCEKSFKKAIKLKEHVATHTGEVLYTCPHCPTKFNARSNLHSHQDAYDNVQTKHSLDKEILQVALVIEKEEDVLIPEMNDSSETEKSIPKRRATRKSTLKKLDCSSPPGVIKEKRKRSIKKEIIKHESSSEDEVESTNDAEFGQNVKAQVNRSRKIEQNHKEDTESRSEKFLKNMKTTKENDAFIQKHMKLSCDICIIDFPDFTKLKNHFRVVHQRRGYVVCCNRQLKKRGLIVDHIYTHNDPEYFKCTECGKVLSDRSCLQRHNILFHQAEELKTFQCNHCPKKFPTQKLLDLHIVHHNECTFICSECGKGFPTKSTMNIHFKRIHSTLCDRMCEICAKLIKGKTAFERHMEEHEGIVQPRVQCKECGSWLKDKNSLRKHMYSKHDGKTHDCKICGKNTPSYSALYSHMKYMHELSAMFHCTFCDKSFKKAIKLREHVATHTGGFLYTCPHCPTTFNAKTNMHSHRKKMHREEWEANRRYAKRTPTGEAVSNTKVSDVDIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-