Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288108.1:112459165-112468892[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 7.2 1.1e+03 1.5 0.0 10 21 303 314 301 315 0.90

2 23 4.5e-06 0.00068 21.0 4.3 1 23 546 568 546 568 0.98

3 23 0.00068 0.1 14.1 1.1 1 23 575 597 575 597 0.98

4 23 0.00058 0.087 14.4 2.6 1 23 618 640 618 640 0.99

5 23 0.0001 0.015 16.7 1.8 1 23 648 670 648 670 0.98

6 23 1.5e-06 0.00022 22.5 0.3 1 23 676 698 676 698 0.99

7 23 8.1e-05 0.012 17.0 6.2 1 23 704 726 704 726 0.97

8 23 1.9e-07 2.8e-05 25.3 0.9 1 23 732 754 732 754 0.95

9 23 0.11 17 7.2 3.5 1 23 760 782 760 782 0.97

10 23 7.7e-05 0.012 17.1 2.2 1 23 788 810 788 810 0.98

11 23 1.6e-05 0.0024 19.2 3.0 1 23 816 838 816 838 0.99

12 23 3.1e-07 4.7e-05 24.6 3.3 1 23 988 1010 988 1010 0.98

13 23 0.00015 0.023 16.2 1.9 1 23 1017 1039 1017 1039 0.98

14 23 8.7e-05 0.013 16.9 0.2 1 23 1056 1078 1056 1078 0.99

15 23 0.0045 0.67 11.6 0.9 1 23 1088 1110 1088 1110 0.98

16 23 8.3e-05 0.012 17.0 0.9 1 23 1115 1137 1115 1137 0.97

17 23 5.5e-06 0.00083 20.7 2.4 1 23 1143 1165 1143 1165 0.97

18 23 3.5e-07 5.2e-05 24.5 1.3 1 23 1171 1193 1171 1193 0.95

19 23 0.00011 0.017 16.6 0.2 1 23 1199 1221 1199 1221 0.98

20 23 7.9e-06 0.0012 20.2 2.3 1 23 1227 1249 1227 1249 0.99

21 23 0.0071 1.1 10.9 6.5 1 23 1255 1277 1255 1277 0.98

22 23 2.3e-05 0.0034 18.8 2.0 1 23 1283 1305 1283 1305 0.98

23 23 2.5e-05 0.0038 18.6 0.2 1 23 1311 1333 1311 1333 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	7.2	1.1e+03	1.5	0.0	10	21	303	314	301	315	0.90
2	23	4.5e-06	0.00068	21.0	4.3	1	23	546	568	546	568	0.98
3	23	0.00068	0.1	14.1	1.1	1	23	575	597	575	597	0.98
4	23	0.00058	0.087	14.4	2.6	1	23	618	640	618	640	0.99
5	23	0.0001	0.015	16.7	1.8	1	23	648	670	648	670	0.98
6	23	1.5e-06	0.00022	22.5	0.3	1	23	676	698	676	698	0.99
7	23	8.1e-05	0.012	17.0	6.2	1	23	704	726	704	726	0.97
8	23	1.9e-07	2.8e-05	25.3	0.9	1	23	732	754	732	754	0.95
9	23	0.11	17	7.2	3.5	1	23	760	782	760	782	0.97
10	23	7.7e-05	0.012	17.1	2.2	1	23	788	810	788	810	0.98
11	23	1.6e-05	0.0024	19.2	3.0	1	23	816	838	816	838	0.99
12	23	3.1e-07	4.7e-05	24.6	3.3	1	23	988	1010	988	1010	0.98
13	23	0.00015	0.023	16.2	1.9	1	23	1017	1039	1017	1039	0.98
14	23	8.7e-05	0.013	16.9	0.2	1	23	1056	1078	1056	1078	0.99
15	23	0.0045	0.67	11.6	0.9	1	23	1088	1110	1088	1110	0.98
16	23	8.3e-05	0.012	17.0	0.9	1	23	1115	1137	1115	1137	0.97
17	23	5.5e-06	0.00083	20.7	2.4	1	23	1143	1165	1143	1165	0.97
18	23	3.5e-07	5.2e-05	24.5	1.3	1	23	1171	1193	1171	1193	0.95
19	23	0.00011	0.017	16.6	0.2	1	23	1199	1221	1199	1221	0.98
20	23	7.9e-06	0.0012	20.2	2.3	1	23	1227	1249	1227	1249	0.99
21	23	0.0071	1.1	10.9	6.5	1	23	1255	1277	1255	1277	0.98
22	23	2.3e-05	0.0034	18.8	2.0	1	23	1283	1305	1283	1305	0.98
23	23	2.5e-05	0.0038	18.6	0.2	1	23	1311	1333	1311	1333	0.97

Sequence Information

Coding Sequence: ATGGAAACGTTATCGAAATcaaaagatacttttttctctaatttcaacaaaatatgcCGAACTTGCATTAAAACAATAACAGAACCTCTTCATCAAATATTCGAATCGGAAGTTGTGGTGTTAAATGAAAGTATTAAAACTTGCGAATTGCTAATTGCTGTATCTACTCTAAAAATGCATCCCGACGATGATTTACCTAAAGCAATATGCCTCCAATGTCTTGATAGCTTAACAAAGgcatataattttcaaaaaatgtgcatTCTCTCGGATCTATGCATGAGAAGTGCTATACTTCCACCTGAGTTGCAGATTACCTTGCAAAAAACTTCACTTACTAACTCTGACGTGGTTAGCAAGAAACAAGAAGATATATTCTTTGAGACATGTATCCAAAATCTAATAAATCCTATTGAAAAtccaaatagttttaaaattttatactcTGAGCCAATGAATACAGATATTGAAAATATTGGAGCAAGCGAAGAGTCTATTGTCTCAAAACCAATCATGCAACAAAGTGATGTTCTTTCAAGCCAAGATATAAACAACATGAAGTTTTTGTTTCTGCCTGCTGAAAGTGAACTGATTCATCATTCGGGAACAAACATGATCATTCCAAGTGAAATTAACACAAGTATGAACGTTTTTACGCCTCTTACTTCTACAATAGCCAACGTAGACCATTTGGGAACAAGCATAGTCATTCCGAGTGATATCAGTGAAGTAATGCTTTTGGAGCAACAAATgcaaaaaactttaattacaAATGATCCTCAACTTGATTTCACAAATGTTTCGCTGTCGGAAGTTCCACCATGGAAAAAgggaacaaaatttcaatctgTTAACCAAGACATATGTGTCCAAACTGTCCTAATTCCAagtgaaaacgaaaatattttcccCACCAATTCATTGCTCACAAGTCATATTAACAACTTAAATATGGCAAATATATCTGAAACATGCAAGCAAAGTACGACAACTCcgattgaaaagaaaaacactaaCAATAGATTGCCAATAGAGATGTCGCTTACAGTTAGTgaaccaaatcaaatttttaatgaagcaGTTGAACAAAAAGAAGATGGGAAGATAATCCTTAAAACTGATTCCAGAAGCTGCTCTAAGAGTTTGCCCGCTAAAACATTGCCTCCAGAAGACGAAATCGTGATTTTCCATCAGACTACATCTTCAAGAACTGTACCAACGTCTGAATACGATGAGAATAGTGATAACGAAAAACCAAATGTCCCTGGTCGCTTACGAGCTGATTCGGATTCTATAGAACATAATATTAATCAATCTGAACCAATCAATGTAGTGAAGGTAAAAACCATTGGACCAACATCCACCGAAGATGCCGATAATCATGAAGATGAAGGAACAAAAACtttggttgatgttgatgttgaggatttaatacaaacaaatatCGTGGACAGTAAAGCTAAGAAGAAAGAAGAACCTATTTACAGTACGTCAGAAGAATCTGAAGAATCAGGTAGTGAATGTTCAGACCAAAACatcattaaagaaaatattgataACGAAATGGAAAATCCTGATGATCCAGTTGTGCAAGAAATTGAGAAgccGAATCCTCgcaacaaacaaattatatgCTTCACTTGTGAAACTTGTGGTAAAAGTTTCAGTCGCGAATATCGTCTTCATCGCCATATGAAACTTCACAAAGTAGAAGGTCAACCATTCGAATGTGAACACTGCAGGAGACGTTTCCCCCTGGATGGCCTATTGCAGCGCCATCTTATAACCcatgaaaagatatttttggaCATAGTTGAAGCAAAGCAAAACAATGAAAAGAAGGTTGATGCATACCAGTGTCCTAAGTGTccaagaaaattccaaaagcatGAATCACGAGCCTCTCATATGAGAATTCATGAAAAAGAAATGAACAAACAATTCACGTGTGATATATgttcaaagatttttgaaacTCTGTATCGCCTCACAAGGCATAAACGATTGCACCAAGAAAATCGCAGATTTAAGTGTGATATTTGTGGAAAAACGTTCGACTTAAGTTCTCAATTAGTTGATCATCTCAACATGCACAACGGTCGTAAGCCACATGTTTGTGATCACTGTCAGAAATCCTTTACACAAGCCTGTACACTAAGAGAACACATACGATTACACACTGGTGAGCAGAATTTCCTGTGCTCAGAATGTGGAAAAACATTTAACAGTGCCAGCAATTTAAGACAACATCTAATGCGTCACACTGGTGTTAAACAATTTCAGTGCTCAGAGTGTCCGAGTAAGTTTACTTGTAAAAGTGGTCTTTTCTCGCACAGAACCATTCATCGAACTCAAAAACCCTATGAGTGCAGTACTTGCGGCTCAAGATTTACCAAAAGCTTCTCGCTAAAGAAACACGAAAGAATACACACTGGGGAGAGGCCGTTTAAATGTGAACAATGTGAAATGAGGTTCAATTCCGCAGATCATGCAAAACGCCATATGCGAACACACACTGGAGAGAAACCGTATAAGTTATCTGATCGAAACATAAGAAAGATTAAAGATCAATCCAGGCCGAATATTGAAAAATCGGACAAGATCACTGAATTCGATTCCCCCTTATCAAGTGAAATCAAAGATATAGTAAATGTTTGGGTCACGGAAACATTGCCGAAAGTAAGCGAATCTATTGATGAATGCGATGTGCGAATTGATGTTTTAAAACGTGAGCAAACCTACGATACAAATATTaattttgatgaacaaaaagGAAATATAAAGGAGGAGGGATCTGAAAACAACTCAGATTCACCAGACAATGAGGAAGCAGACGAGAACAAAGGAAGTATAAACTCTGATAATAAAGAGCATTTTTTAAcgttaaaagaagaaaacttacATGAAGCAATAAATCAAAACATAGAGAGGCCAAACCCTAGCAATAAGAGAAATTCTTGCTTCACTTGTGAAGACTGTGGTAAGTCGTTCGATCGCCGGCATCGTCTTCGTCGTCATATGAATGTTCACAAAAAAGAAGGTCGGCCATTTGAATGTGAACACTGCAAAAGGCGATTCGTTCAGGAAGGCCGTTTGCGACGTCATGCTATCACCCATGATAAAACTTTTCTAGAAaagacgaaattaaaaaaaaatgttaatggaTACCAATGCCCCGAGTGCCCTAGAAAATTCCTCAAGCAAGTGTCACTTGCTTCTCACATGAAAATTCACCGAAAAGAAAGCGATATTGATAAACCTTACGAATGTGAAGAATGTCTAAAGATTTTTGAGGGAAAACAGCGCTTAAATAGGCACAAAAAACTTCACGAGGAGAAATCGTATGACTGCGATACTTGTGGGCAAACTTTCGGCTTAAAATCGCATTTGATTGATCATATTAGCAAACATAATGGGATTAAACCACATATTTGTCAATATTGTGAAAAATcGTTTCAGCAATCCAGTACTTTGAAAGATCACATACGCATTCACACTGGAGAAGAACCGTTCTTATGCTCGGAATGTGGAAAAGGATTTAAGAGTTCAAGTAATTTAAGACAGCATCAGTTGCGACACAAAGGAGTCAAACCTTTCCAGTGTTCAGTGTGTCCAAGCAAGTTTCCGTTAAAAAGTGATCTTGCCAAACATATGGGTACTCACGGAAATGAAAAGCCATATACTTGTGACATTTGtgattcaaaatttacaaaaaattcctCATTGACGAAACATAAAAGAATACACACGGGCGAGAGGCCATATAAGTGTGATTGCTGCGAAATGAGGTTTAGGGCTTCAGATCACATGAAGCGCCATATGCGAACACATACTGGAGAGAAGCCGTACGCGTGTAAATATTGCGAAAGAAAGTTTTCTCAAACGAACGATATGATAAAACATCTTCGAACACATGTTGGAGAGAATGTCTATGAATGCAAAGAGTGTGATGCATCTTTTAGGTTGAGCacggaattaaaaaaacatatcgCGGAACATTACCAAGCACAAATGAAGAATGATGCAAcagaaacaaaatga
Protein Sequence: METLSKSKDTFFSNFNKICRTCIKTITEPLHQIFESEVVVLNESIKTCELLIAVSTLKMHPDDDLPKAICLQCLDSLTKAYNFQKMCILSDLCMRSAILPPELQITLQKTSLTNSDVVSKKQEDIFFETCIQNLINPIENPNSFKILYSEPMNTDIENIGASEESIVSKPIMQQSDVLSSQDINNMKFLFLPAESELIHHSGTNMIIPSEINTSMNVFTPLTSTIANVDHLGTSIVIPSDISEVMLLEQQMQKTLITNDPQLDFTNVSLSEVPPWKKGTKFQSVNQDICVQTVLIPSENENIFPTNSLLTSHINNLNMANISETCKQSTTTPIEKKNTNNRLPIEMSLTVSEPNQIFNEAVEQKEDGKIILKTDSRSCSKSLPAKTLPPEDEIVIFHQTTSSRTVPTSEYDENSDNEKPNVPGRLRADSDSIEHNINQSEPINVVKVKTIGPTSTEDADNHEDEGTKTLVDVDVEDLIQTNIVDSKAKKKEEPIYSTSEESEESGSECSDQNIIKENIDNEMENPDDPVVQEIEKPNPRNKQIICFTCETCGKSFSREYRLHRHMKLHKVEGQPFECEHCRRRFPLDGLLQRHLITHEKIFLDIVEAKQNNEKKVDAYQCPKCPRKFQKHESRASHMRIHEKEMNKQFTCDICSKIFETLYRLTRHKRLHQENRRFKCDICGKTFDLSSQLVDHLNMHNGRKPHVCDHCQKSFTQACTLREHIRLHTGEQNFLCSECGKTFNSASNLRQHLMRHTGVKQFQCSECPSKFTCKSGLFSHRTIHRTQKPYECSTCGSRFTKSFSLKKHERIHTGERPFKCEQCEMRFNSADHAKRHMRTHTGEKPYKLSDRNIRKIKDQSRPNIEKSDKITEFDSPLSSEIKDIVNVWVTETLPKVSESIDECDVRIDVLKREQTYDTNINFDEQKGNIKEEGSENNSDSPDNEEADENKGSINSDNKEHFLTLKEENLHEAINQNIERPNPSNKRNSCFTCEDCGKSFDRRHRLRRHMNVHKKEGRPFECEHCKRRFVQEGRLRRHAITHDKTFLEKTKLKKNVNGYQCPECPRKFLKQVSLASHMKIHRKESDIDKPYECEECLKIFEGKQRLNRHKKLHEEKSYDCDTCGQTFGLKSHLIDHISKHNGIKPHICQYCEKSFQQSSTLKDHIRIHTGEEPFLCSECGKGFKSSSNLRQHQLRHKGVKPFQCSVCPSKFPLKSDLAKHMGTHGNEKPYTCDICDSKFTKNSSLTKHKRIHTGERPYKCDCCEMRFRASDHMKRHMRTHTGEKPYACKYCERKFSQTNDMIKHLRTHVGENVYECKECDASFRLSTELKKHIAEHYQAQMKNDATETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -