Basic Information

Insect: Syrphus vitripennis
Gene Symbol: -
Assembly: GCA_958431115.1
Location: OY288110.1:71185774-71202648[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.12 18 7.0 1.9 1 23 114 137 114 137 0.95

2 23 0.018 2.7 9.7 1.5 3 23 144 164 143 165 0.93

3 23 0.00065 0.098 14.2 6.4 1 23 174 197 174 197 0.96

4 23 7.1e-07 0.00011 23.5 0.3 1 23 335 357 335 357 0.97

5 23 0.0006 0.09 14.3 0.9 2 23 363 384 362 384 0.96

6 23 3.7e-06 0.00056 21.2 1.8 1 23 390 412 390 412 0.96

7 23 1.9e-06 0.00028 22.2 0.7 1 23 418 440 418 440 0.98

8 23 8.9e-07 0.00013 23.2 1.2 1 23 446 468 446 468 0.98

9 23 3.8e-06 0.00057 21.2 4.2 1 23 474 496 474 496 0.99

10 23 0.015 2.2 9.9 0.1 1 23 501 524 501 524 0.92

11 23 0.004 0.6 11.7 0.3 1 23 607 630 607 630 0.95

12 23 0.00033 0.049 15.1 0.2 3 23 637 658 636 658 0.94

13 23 1.9e-05 0.0029 19.0 2.8 2 23 669 691 668 691 0.96

14 23 0.0011 0.17 13.5 3.8 3 23 1185 1205 1183 1205 0.97

15 23 9e-06 0.0014 20.0 3.4 1 23 1211 1233 1211 1233 0.98

16 23 0.0002 0.03 15.8 2.5 1 23 1239 1261 1239 1262 0.96

17 23 3.6e-06 0.00054 21.3 0.9 2 23 1275 1296 1275 1296 0.97

18 23 0.0018 0.27 12.8 0.3 2 23 1302 1323 1301 1323 0.96

19 23 5.9e-06 0.00089 20.6 1.8 1 23 1329 1351 1329 1351 0.96

20 23 0.00011 0.017 16.6 3.2 1 21 1357 1377 1357 1379 0.94

21 23 1.7e-06 0.00025 22.4 0.8 1 23 1385 1407 1385 1407 0.96

22 23 4.5e-06 0.00068 21.0 3.0 1 23 1413 1435 1413 1435 0.99

23 23 0.00014 0.021 16.3 0.2 1 22 1440 1461 1440 1463 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.12	18	7.0	1.9	1	23	114	137	114	137	0.95
2	23	0.018	2.7	9.7	1.5	3	23	144	164	143	165	0.93
3	23	0.00065	0.098	14.2	6.4	1	23	174	197	174	197	0.96
4	23	7.1e-07	0.00011	23.5	0.3	1	23	335	357	335	357	0.97
5	23	0.0006	0.09	14.3	0.9	2	23	363	384	362	384	0.96
6	23	3.7e-06	0.00056	21.2	1.8	1	23	390	412	390	412	0.96
7	23	1.9e-06	0.00028	22.2	0.7	1	23	418	440	418	440	0.98
8	23	8.9e-07	0.00013	23.2	1.2	1	23	446	468	446	468	0.98
9	23	3.8e-06	0.00057	21.2	4.2	1	23	474	496	474	496	0.99
10	23	0.015	2.2	9.9	0.1	1	23	501	524	501	524	0.92
11	23	0.004	0.6	11.7	0.3	1	23	607	630	607	630	0.95
12	23	0.00033	0.049	15.1	0.2	3	23	637	658	636	658	0.94
13	23	1.9e-05	0.0029	19.0	2.8	2	23	669	691	668	691	0.96
14	23	0.0011	0.17	13.5	3.8	3	23	1185	1205	1183	1205	0.97
15	23	9e-06	0.0014	20.0	3.4	1	23	1211	1233	1211	1233	0.98
16	23	0.0002	0.03	15.8	2.5	1	23	1239	1261	1239	1262	0.96
17	23	3.6e-06	0.00054	21.3	0.9	2	23	1275	1296	1275	1296	0.97
18	23	0.0018	0.27	12.8	0.3	2	23	1302	1323	1301	1323	0.96
19	23	5.9e-06	0.00089	20.6	1.8	1	23	1329	1351	1329	1351	0.96
20	23	0.00011	0.017	16.6	3.2	1	21	1357	1377	1357	1379	0.94
21	23	1.7e-06	0.00025	22.4	0.8	1	23	1385	1407	1385	1407	0.96
22	23	4.5e-06	0.00068	21.0	3.0	1	23	1413	1435	1413	1435	0.99
23	23	0.00014	0.021	16.3	0.2	1	22	1440	1461	1440	1463	0.90

Sequence Information

Coding Sequence: atgctagACTATGATATTGATAAAATGTGCAGAGTGTGCCTCCAAACGaatcttgatttatttttgctgttCGATGAACAAAATGCAATCGAAGGAGTATGCCTCTCAAATATGATTTCAGAAATGACAATATTTACAATCCGGCGTTATGATGACTTTCCCCATCAGATTTGTTTGGAATGTATGCGAAGAGTTCGTAATGCATACGaactcaaaaaacaatttgagcAATCTCATCGTAAACTTCTTACTTATCTAGAGtctatcaacaaaaaaacaatagacaCGACTCCTGATATGAGAAATCACAAGGAAGTCCAAACAGAAGATGCGGTATTATATCCATGTGAGAAATGCGATCATAAGTTTCTGTCCTATCAAAAACTAAGGGTACACCGTATAGTGTCACATAAAGGAACTGCAAATAATTGCCGATTCTGTTTCAAAGAATTCAACCGCATCGGAGACCTTAAAAACCATATTGCTGCGCATCACCCCGAAGTACAACATTTCAGTCCCCACGAATGCCTTATCTGCAATCGAAGGTTTACTCGTAAGCACCATGTTAGTCGACACATGGCAAAGATACATAAAATAGAAAGTGGGCAAATATCTGAAGATGACATTACAATTGGAATAAAATCTGATCATAATAAAGAAGAGATGATGGTTGAAACTGAAATGGACTATGGAAGTCTTACAAAAATAGAAGATGCCTCCGAAGTCTTATCAAATATAGATCCGGAAGACTACGATGATGGAAGTATTGGTGCAGCAGAAGATCCATTTAGTAGCGATGATGATGACAAGCCTTTGGCTGGTTTGCGAAATACAATTAATGCCAAAAATaaagctttggaaaatatttcaataaaagaagAACTCGATGATACTCCTGCGGAAGAACCACCAACCTGTTCCCCAAATTCCGAAGAAACGGAAACTGATAACAAGGATAAATTATTGTTCCTTGATAATTCTCAAGATTATGTCAAATCGgaatttatttgtgaaatttgtGAAAAGGCATTCAGCTCTAAAGCTTATTTGCAAAAACACATGGACATGCATCTGAATAAATCTTGGAAATGCAAGCTGTGTTCAAAAGGTTTTGAGTCCAAAGAAGCTTTGAAGGAACATAATAAATCacataaaaaggaaaaaccatttttatgtTCGGAATGTGGCTTGAGTTTCGTTAAAAATGATCATTTGCTGAATCATATGCGAAGGCACACTGGAGAAAAGCCATACAAATGTAAATATTGTGATAAAGGCTTTCCACGGGCAACGGATTTAAATGTACACGTTAAATATCATACTGGAGAGAAAACACATGTGTGTACAACTTGTGGCAAAGGATTCCAACGATCGTACAACTTAGTTGTACACATGCGAGTACATACTGGTGAAAGACCGTATCAGTGTTCCCATTGTCCAAAAAATTTTGCACAGTGCAATGACTTGAAAGCTCACATTAGGAGGCACACTGGTGAACAGTATAAATGTGATATATGTTCAGCTGGATTTGTACAAGGCTACCTGTTGACACAACATAAAATCGCAGTTCATGGGATTGAGAGCGGGGCCAGAAACGGAAGAGTTTCAAAaGTCAATCGGCATGATGAGTTTCCACATCTTATATGCTATGAGTGCATTGAACGAGTCGAAAGTGCCTACTCCTTCAAAAAAGACTTCGAGCAATCTCATCGTAAGCTTGTCACATACTTGGATGCAATCAATAAATACCAACCAATCGCTGACGTAAAACACAAACCAACAGAGGAAAAAAGCACCCAAACCATAGACTCAACTTTGTATCCATGTGAGAAGTGcgatcaaaaatttattaaatatgaacGATTGCGGGAACATCGAGCCATTGCACACAAAGGGTCGGCTAATTTATGTCGAATTTGTAATAAATCTTTCAACCGCTTGGCAGGCTTAAAGAGTCACATTAGTGCAGCGCATCCAGAAATTGGATATCACAACTCCTCCAATCAGTGTTATGTGtgtaataaaatgtttacaCGCAGAGATCACGTTACACGTCACATAAGAAATGTTCATAAGATCCAAACATCTGAATTTGGCTTCGGATTAGAATCCTTAATGTACAAGGATGGAGATCCTACAAGCCATATATTGGAGGAGGGAGAATGTAATGCAGAAAATGTAATGAAAGAAGAACAGCAGCCTCAACCATATATCGAATGTCTGGTAAATTCCTTTGAAAATGAAGTGGAGTTGCTCGCCGAGcctgatatatttaaaaattacacaaatgaagaagatgaagaaataTCAAATGATTATGATATTGAAGGCGGCGGtggtgatgatgacgatgatgatgatgatgatgatgaagatgttGATCATGATGATGGTTTAGACACAAATGATGATGGAGCTATTAATAGTACCGAATTTGTGGcggcaaataattttattaaatgtgaAACTGAAATATTGGAATCGCAAACTCCACCACAACCTGAAGattttgatctAACGTCTTGTCTTTCGCTTGACAAATCGCAGTTTCTAAATGAGGAAAATAATTCTACCGAATCTAAACAACAGATCATTGAAAAGAACACTATCAAAGAAGAACAGGATTCAAGTATGGAAGACAATAATTTAGATACGATAACAGTTAGTGctgataaaaatatacaaaatccCCATTATTGGCAAAGGAATATTGCAAAACAGGCGAGACAAGCTGGACAGTCGTATGTAAACAAACAAGGGAACATCGTCCAGGCTCGAGTACTCAAAAAAGGATGCAATGAAACATGTAGAttaaaatgcaattcaaaattaacaGAACAGCAAAGATTCGAACTTTTCAATGAGTTCTGGAATATAGAAACACACGAAAAAAAATGGGAATATCTTACAAAGAGTGTTTTACTTAAGCCTATCAAGTGCCCAACAACCAAATGGGAATCGAGAAGAAAAGAATCTCGAACCTACAGTTTTTGGGTTGACGGAAACAACATATTGGTGTGCAAACCTATGTTCTTGAAAACATTTGGTATAAATGATACATGGGTAAGAACAGCATTACATAAGAAAGTAAGCAACAACGGCTTAACAcctgattttcgaaaaaaaaagaaacatgtaTTAGATCCATTGTTAGTTTCTATTGTCAAAGAACACATATCGGTATTTCCAAAAGTTGCTTACCTTTACTCTCACAAGGACAAAAAATATTGCGAATACGAGTATCTAGACGAAAGccttaatatcaaaaaaatgtacaatttttataaaacttggaTGGGAGAAAATTTTTCAACTCAAACCCCGACTGCCTCTCAGCGACAATATAAGCACATTTTCAACACCGAATTTAATCTCCGTTTTTACAAACCGAAAAAAGTTAACActTCAGAAGTAAACAAAGTTACAATTAAACAAGAAAAGCAAGAATTTAACATCACCGAAATTATTTATTCTGCACCTAAAGAAACAAAACGTGGAATAAAGGATACATCTTTTGATTGTTTCCACAGGATAGAAGATGGAAAATTTGGATGTAATTTGTGTGAAAAAACGTTTAAATCTTCTTATCACGTCAAAAGACATTTCCTATCACACACTCAAGAAAAAGCATTCCAATGTGAGGTTTGTGAGATGCGGTTTAATAGAAATGATCATTTGAAAAACCACATGACAAAACATAACCCGGTAAAGCCATTCCAATGTGATAGCTGTGGTGCGAGTTATGGTCGCGCAGATCACCTTAAACGtcataaagaaatgcaccatTCAAATGATCCGAATGCTCCTCCAATAAAAGGAGAAGTTTGCGAATTATGTAATAAATCATACAGTTCTAAGGCTTATCTACAAAAGCATATGCTCAAGCATACAGAAAAATGTTGGAAATGTAAACTTTGTTCTGTTGTGTTTGAAACTAGTGAGGCTCTAAAAGAGCATTCGAAATCACACAGCAAAGACAAACCATTTTTGTGCTCAGAATGTGGTTTATGTTTCCCAAGGAAAAATTATCTTATTATTCATATGCGAAGGCACAATGGTGAACGACCGTACAAATGTCAATATTGCGATAAAGGCTTTCCACGTTCTACTGACTTAAAAGCACATGAaaaGTGCCACACCGGAGAGAAAACCCACTTTTGCAACGTGTGTGGCAAAGGATTTCCGCGCCCTTACAAATTGTCTGTTCATATGCGAATTCATACCGGTGAAAAACCTTATCAGTGCATGCATTGTCCAAAGGCTTTTGCTCAGTGTAACGATTTGAAAGCACATATTCGGAGACACACTGGGGAGCGATTCAGATGTGAATTATGTGGGGCTggatttatacaaaaatacaatttgacaCAACACAAAGCTGATGCGCATGGTATTATAAAGGAGTCTCGTTTAGGTCGAGTGGCCAAAATACCAATGCCTGAGCCAGTTGGAGAGaCTATGAACATGACCGAAGTTTTAAATAATACGGATTCTGAAAAATTACAAGTGGGACTTTCAACTAGTATGATGTTTCGTGGTGTGGCGCttcattaa
Protein Sequence: MLDYDIDKMCRVCLQTNLDLFLLFDEQNAIEGVCLSNMISEMTIFTIRRYDDFPHQICLECMRRVRNAYELKKQFEQSHRKLLTYLESINKKTIDTTPDMRNHKEVQTEDAVLYPCEKCDHKFLSYQKLRVHRIVSHKGTANNCRFCFKEFNRIGDLKNHIAAHHPEVQHFSPHECLICNRRFTRKHHVSRHMAKIHKIESGQISEDDITIGIKSDHNKEEMMVETEMDYGSLTKIEDASEVLSNIDPEDYDDGSIGAAEDPFSSDDDDKPLAGLRNTINAKNKALENISIKEELDDTPAEEPPTCSPNSEETETDNKDKLLFLDNSQDYVKSEFICEICEKAFSSKAYLQKHMDMHLNKSWKCKLCSKGFESKEALKEHNKSHKKEKPFLCSECGLSFVKNDHLLNHMRRHTGEKPYKCKYCDKGFPRATDLNVHVKYHTGEKTHVCTTCGKGFQRSYNLVVHMRVHTGERPYQCSHCPKNFAQCNDLKAHIRRHTGEQYKCDICSAGFVQGYLLTQHKIAVHGIESGARNGRVSKVNRHDEFPHLICYECIERVESAYSFKKDFEQSHRKLVTYLDAINKYQPIADVKHKPTEEKSTQTIDSTLYPCEKCDQKFIKYERLREHRAIAHKGSANLCRICNKSFNRLAGLKSHISAAHPEIGYHNSSNQCYVCNKMFTRRDHVTRHIRNVHKIQTSEFGFGLESLMYKDGDPTSHILEEGECNAENVMKEEQQPQPYIECLVNSFENEVELLAEPDIFKNYTNEEDEEISNDYDIEGGGGDDDDDDDDDDEDVDHDDGLDTNDDGAINSTEFVAANNFIKCETEILESQTPPQPEDFDLTSCLSLDKSQFLNEENNSTESKQQIIEKNTIKEEQDSSMEDNNLDTITVSADKNIQNPHYWQRNIAKQARQAGQSYVNKQGNIVQARVLKKGCNETCRLKCNSKLTEQQRFELFNEFWNIETHEKKWEYLTKSVLLKPIKCPTTKWESRRKESRTYSFWVDGNNILVCKPMFLKTFGINDTWVRTALHKKVSNNGLTPDFRKKKKHVLDPLLVSIVKEHISVFPKVAYLYSHKDKKYCEYEYLDESLNIKKMYNFYKTWMGENFSTQTPTASQRQYKHIFNTEFNLRFYKPKKVNTSEVNKVTIKQEKQEFNITEIIYSAPKETKRGIKDTSFDCFHRIEDGKFGCNLCEKTFKSSYHVKRHFLSHTQEKAFQCEVCEMRFNRNDHLKNHMTKHNPVKPFQCDSCGASYGRADHLKRHKEMHHSNDPNAPPIKGEVCELCNKSYSSKAYLQKHMLKHTEKCWKCKLCSVVFETSEALKEHSKSHSKDKPFLCSECGLCFPRKNYLIIHMRRHNGERPYKCQYCDKGFPRSTDLKAHEKCHTGEKTHFCNVCGKGFPRPYKLSVHMRIHTGEKPYQCMHCPKAFAQCNDLKAHIRRHTGERFRCELCGAGFIQKYNLTQHKADAHGIIKESRLGRVAKIPMPEPVGETMNMTEVLNNTDSEKLQVGLSTSMMFRGVALH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -