Svit003488.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- Sry-delta
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:50873213-50874295[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.8 6.8e+03 -1.8 3.1 26 40 28 41 3 46 0.69 2 8 4.3e-05 0.043 14.9 0.9 15 40 140 162 135 165 0.82 3 8 0.67 6.7e+02 1.5 2.2 9 23 163 174 158 176 0.74 4 8 2.3e-06 0.0023 18.9 0.8 14 40 193 216 186 218 0.86 5 8 0.53 5.4e+02 1.8 0.9 13 28 220 235 216 242 0.80 6 8 0.00059 0.59 11.2 2.4 4 40 240 273 237 283 0.84 7 8 0.06 60 4.8 5.8 8 41 273 303 270 307 0.77 8 8 0.0095 9.5 7.4 0.2 16 38 324 348 318 348 0.85
Sequence Information
- Coding Sequence
- atGACAAAAAAGTGTATTTTGTGCCGTCATCTAATTGACTCAAACTTAGGTTATTACAATATTGGCTATACCAGCATCGAATACtccaacaaaacaataaaaaacattcTTACCCATCTTTCGAAATGCATTAAAACAGATTACTGTTTTGAAGATAGCTCTAGGGTTTGCAACCCTTGCTATGAAAAACTAGTTGAATACGATCGAATAATGATTGAACTCCTAAATTGCCAGAAAGAACTATCCAAAATGCTGCAAGATTCTATTAAATCTATGGATGTCGACGACGACACTGATGAAGATAATAATCCCAGAGACGAAGAGTGCACCAGTGATATGGGAATAAATAATGATGAGGACAATATGAATGATTTCAAACAAGAATTTACGGAAGATACCGTCTTTGATCGTCCACCCCGTTCTTTTGAATGTAACATTTGTGAGAAAACGTTAAAATCTAAAACATCTCTTAAGAGTCATCTAAATGCTCATAGTTCGgaagtaaaatgtaaaatttgtgGAACATTGTGCAGAGATGAAGAATACCTTGAACTACACATGAACATCCACGAAGGAAAAACAGAGAACGATTGCCGATATTGCGATAAACAATATTCCCGCCGTTCGAACGTAATTCGTCACATGCAACTCCATTGGGATAAGAAGAAATTCCAATGTGAAAAATGCGGCCTTCGATTCTCACAAACACACATTTTATATAACCACAAAATGATCCACGAAGGTGAAGAACAACCTATAATTTGCCAAATCTGTGAACAAACCTTCAAATCGAGAAAAACCTTCAGGCACCATATGATGACCCATAGAAAAGATCGACCAATGCACACCTGTGAAATTTGTGGTAAGAAATTCACCGAGAGATACACCTTGAAGATGCATTTAAAAACGCATAGCAGTTGCAAAAACGAAGAATCGGaaacaccaaaaaaacaaaatgctcccACAAAGAGTTTTCCTTGCATCATATGCGAAAAAGTTTTGCACACAATGGAGAGTCTTGAAACCCATAGAGCTAAGGAACACGATGTTATTTGTTCTGAAAGTAATttcctaaaatattaa
- Protein Sequence
- MTKKCILCRHLIDSNLGYYNIGYTSIEYSNKTIKNILTHLSKCIKTDYCFEDSSRVCNPCYEKLVEYDRIMIELLNCQKELSKMLQDSIKSMDVDDDTDEDNNPRDEECTSDMGINNDEDNMNDFKQEFTEDTVFDRPPRSFECNICEKTLKSKTSLKSHLNAHSSEVKCKICGTLCRDEEYLELHMNIHEGKTENDCRYCDKQYSRRSNVIRHMQLHWDKKKFQCEKCGLRFSQTHILYNHKMIHEGEEQPIICQICEQTFKSRKTFRHHMMTHRKDRPMHTCEICGKKFTERYTLKMHLKTHSSCKNEESETPKKQNAPTKSFPCIICEKVLHTMESLETHRAKEHDVICSESNFLKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01396832;
- 90% Identity
- iTF_01396832;
- 80% Identity
- iTF_01396832;