Svit006642.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288108.1:76026432-76026896[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-07 0.00037 21.2 0.0 12 42 4 35 2 37 0.84 2 2 6 4.7e+03 -1.5 0.0 22 27 137 142 120 146 0.79
Sequence Information
- Coding Sequence
- ATGAAGGAAGTCTTGGATAAGACTTTGTCTTTAAGAAAGTCAGCACAAAAATACGGCATCAAACCGACAACACTACAAAGTCGAATAAAAAAACACCATGAGGAGGTTGCTGCtggagagaaaggtaacttcaACTCGTCACGTATTTTTGCTTCCAAGTTCTCGTCGAATCAAGTGTTCACTACGGAAGAAGAAACTTTGTTGAATAAGTACATCGCAAAGTGTTCCAAGATGCATTATGGTTTGACAACGATACAGGTGAGAAAACTGGCGTACGAATTTGCAAAAATGAATCAACTGCATTATCCACCTTCCTGGAATTATAATAAAATCGCAGGAAAAGATTGGCTGGATAGTTATCGGAAGCGAAACGCAAATCTAAGTCTACGGAAACCTGAGAATACCAGCGCAGCACGATCTTATGGATTCAACCAGACAGCtgtaattgtttttacgaaaacCTAG
- Protein Sequence
- MKEVLDKTLSLRKSAQKYGIKPTTLQSRIKKHHEEVAAGEKGNFNSSRIFASKFSSNQVFTTEEETLLNKYIAKCSKMHYGLTTIQVRKLAYEFAKMNQLHYPPSWNYNKIAGKDWLDSYRKRNANLSLRKPENTSAARSYGFNQTAVIVFTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00974599;
- 90% Identity
- -
- 80% Identity
- -