Svit030333.1
Basic Information
- Insect
- Syrphus vitripennis
- Gene Symbol
- -
- Assembly
- GCA_958431115.1
- Location
- OY288110.1:62039626-62043410[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-08 2.8e-05 24.8 0.0 2 41 16 55 15 58 0.93 2 2 4.1 3.2e+03 -1.0 0.1 31 42 328 339 326 341 0.78
Sequence Information
- Coding Sequence
- atgCCAGCAAATTACAAAAGGAAATCAACCAGGCTTTCTTGGTCAAAAGAAAACATGGATAAGGCCATTGAagatgtcaaaaacaaaaagtgtggCTGGCTTTTTGCCGCTAAAAAGTATGAAGTGCCACAAGCCACCCTTCGGCGCCACTTCAAAGCCATTCCAAAAAACATGGGGCGCTTCAAACCAACGTTTAACGAAGAAATCGAAAAGCAGTTGGTTCAACACTTATTGGATTTCGAGAGTCGTTTCTTCGGTTTTACGACAACTGAAGTCAGAAAATTAGCATTTGAATTTgctgaaaaacttaaaataaaacacacattCGATAAGAGATCCCAAATGGCTGGTTGGGACTGGCTGGATGGTTTTAGATCCCGGAACCCAAAACTGACTTTAAGATCACCTGAGCCAACTTCTGCTGCGAGGGCAAAGGCTTTTAATAAGCCACAGGTGatgaagttttttgaaatactaaGTTCGTTAATCACTGAAATACCGCCCCAAcgaatatacaggGCATTGGAATATGCCAAAGCAAATGGTGTTGTCATGTTGTGCTTGCCGCCTCATTGCACACATAGAATTCAGCCTCTGGACGTATCATTTTTTGGTCCACTTGACAGTTACTATAATCGGGAATTGACAACATGGATTAAAAACCACCCCGACAGAACTGTTGGCCTCTACCAAATTAGCGCTTTGTTTGATGATTATCAATCATTCGATGAGCCAGGACCTTCAACATCAACAGGCCTTGTGGACTcagttcaaattcaaaaatcttcaacACCAACTAAAGAATTAGAATCGGTTACCATCGCAGCTACTTCACCATTATCCGGACCGACAGAATCATGTGACGTTCCAGCTCCATCGTCATCAACATTTCATCTCAACATTTCAAGTCCTACAACATTGTCATCTTATCCGTTCGTTAAACAGATGCTAAAGTCTATTTCGCCATTGCCAAAATCTATTTCGACATTAAgtgtcagaaaaaaaaggaaggctACAGCTACAGGATCTCAAGTTCTCACTTCAAGCCCATATATGAGTGAAGTTAAAGCTCAGGTCCaggcaaaaaatgaaaaagaaaatcggaAGAGTCTTAGAGCTCGAAAAGTAACAAAACGGCCCATATTACAAGACGATGATGTTCCGCAGGACTTTTCAGAAGATGATGACGATGTGTCTTGCATTTACTGCAATGAGCTGTTCAGCATTTCACGTCCAGGAGAGCATTGGCTATGTTGCCAGGCATGCACTAAATGGTGTCATGCATTGTGTGCCGGTGTTGatcacaaaattaaacaattcaTTTGCGAGCTCTGCAATGAAGGCTAA
- Protein Sequence
- MPANYKRKSTRLSWSKENMDKAIEDVKNKKCGWLFAAKKYEVPQATLRRHFKAIPKNMGRFKPTFNEEIEKQLVQHLLDFESRFFGFTTTEVRKLAFEFAEKLKIKHTFDKRSQMAGWDWLDGFRSRNPKLTLRSPEPTSAARAKAFNKPQVMKFFEILSSLITEIPPQRIYRALEYAKANGVVMLCLPPHCTHRIQPLDVSFFGPLDSYYNRELTTWIKNHPDRTVGLYQISALFDDYQSFDEPGPSTSTGLVDSVQIQKSSTPTKELESVTIAATSPLSGPTESCDVPAPSSSTFHLNISSPTTLSSYPFVKQMLKSISPLPKSISTLSVRKKRKATATGSQVLTSSPYMSEVKAQVQAKNEKENRKSLRARKVTKRPILQDDDVPQDFSEDDDDVSCIYCNELFSISRPGEHWLCCQACTKWCHALCAGVDHKIKQFICELCNEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -